Dbfetch
ID LT719040; SV 1; linear; genomic DNA; STD; HUM; 11462 BP. XX AC LT719040; XX DT 28-JAN-2017 (Rel. 131, Created) DT 28-JAN-2017 (Rel. 131, Last updated, Version 1) XX DE Homo sapiens HLA-DPB1 pseudogene for MHC class II antigen, cell line DE DKMS-LSL-DPB1-1638, null allele HLA-DPB1*16:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-11462 RA Albrecht V.; RT ; RL Submitted (25-JAN-2017) to the INSDC. RL Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 43, Saxony, RL 01307 Dresden, GERMANY. XX RN [2] RA Lang K., Schoefl G., Schmidt A., Lange V.; RT "Complementing the HLA-DPB1 Database: Full-Length Gene Characterization of RT all Common and Well-Documented Alleles"; RL Unpublished. XX DR MD5; 18de5a4e056f293f29fdd7958b57ba8d. XX FH Key Location/Qualifiers FH FT source 1..11462 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL-DPB1-1638" FT /db_xref="taxon:9606" FT exon 1..466 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=1 FT CDS join(367..466,5002..5265,9217..9498,10046..10156, FT 10486..10504) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /note="MHC class II antigen null allele" FT /pseudogene="allelic" FT intron 467..5001 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=1 FT exon 5002..5265 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=2 FT intron 5266..9216 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=2 FT exon 9217..9498 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=3 FT intron 9499..10045 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=3 FT exon 10046..10156 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=4 FT intron 10157..10485 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=4 FT exon 10486..11461 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=5 XX SQ Sequence 11462 BP; 3106 A; 2547 C; 2966 G; 2843 T; 0 other; taatccctgt agatgggcca gcagaatatt tgagatcacc ttcagagcaa agaaaacgca 60 taatctcccc aaacatcatg acttatctga ctggttaaaa tgagtatcac tgtctttcct 120 ccgtcatctt aagtgcatca caggctttat attttcagac ctttcatact aactttctgc 180 ctagtgagca atgactcata caaagctcag tgtccattgg ttcttttctc agactctgtc 240 caatcccagg gtcacagaag actacttggg ttcatggtct ctaatatttc aaacaggagc 300 tccctttagc gagtccttct tttcctgact gcagctcttt tcattttgcc atccttttcc 360 agctccatga tggttctgca ggtttctgcg gccccccgga cagtggctct gacggcgtta 420 ctgatggtgc tgctcacatc tgtggtccag ggcagggcca ctccaggtaa gagccgagct 480 gccattcttg gagggtctgg ctcagggaac aattcctagg ggacgttatc tttaagggat 540 caaattctga gacaggctgc gggggctcct gccctaaggc agtgtcctct cttcccagct 600 agagaaagag gttcatcccc tataggatag cttgctaccc tactggccta ttctctctcc 660 aaggacatgg gtacagtaaa cagagagagg tgcccagtgg tcagtatgct tgtctttggg 720 gaaaatggga ccaagaggtc caggataacc ttggacagac aaggtttgca gagagagaag 780 ttggcaagtg caggctcctg ggcgtgttca catctgcatc cagcctggag gggactcagg 840 cagagagccc taagctggag tgtccaggct ctgaggatca ctgaggattc agtgctcacg 900 aagaatgcct cttattcccc agggtggagc aggagcccac accccttgga caattaagga 960 gagaagggag ggagggggat aggttttagc ccctgaaggc attctcatta aaggtacttc 1020 tcccagcctc cccagaactt ggttagggta ctagagtggg ttgcgacttg taggaagaat 1080 gagatgaggt tgtgtgggtg catgacaggg attgagtgta ggttatcaga cagccaagga 1140 agcagtaacc aagtgaaaaa tctcttcttc ctgctgcctc cctgtggctg gtgtaatatt 1200 atggcatcta tgatccattg tttttctctc aggatactct caggatattt ctttttatat 1260 atatatatac tttaagttct agggtacatg tgcacaacgt gcaggtttgt tacatatgta 1320 tacatgtgcc atgttggtgt gctgcaccca ttaactcgtc atttacatta ggtatatttc 1380 ctaatgctat ccctcccccc tccccccacc ccacaacagg ccccggtgta tgatgttccc 1440 cttcctgtgt ccatgtgttc tcattgttca gttcccacct atgagtgaga acatgtggtc 1500 tttggttttt tgtccttgca atagtttgct gtgaatgatg gtttccagct tcctccatgt 1560 ccctacaaag gacatgaact catccttttt tatggctgca cagtattcca tggtgtatat 1620 gtgtgcattt tcttaatcca gtctatcact gatggacagt tgggttggtt ccaagtcttt 1680 gctattgtga atagtgccgc tataaacata tgtgtgcatg tgtctttata gcagcatgat 1740 ttataatcct ttgggtatat acccagtaat gggatggctg ggtcaaatgg tatttctagt 1800 tctagatcct tgaggaattg ccacaatgtc ttgagatacc atctcacacc agttaaaatg 1860 gcgatcatta aaaagtcagg aaacaacagg tgctggagag gatgtggaga aataggaaca 1920 cttttactct gttggtggga ctgtaaacta gttcaaccat tgtactctca ggacatttct 1980 agtccaaatt tacaccaaca ctctgagagg aaggactgca aagtaggtac cttagttttc 2040 cactgacttc cacctttcct gcttacaccc ttcctcctag acctctccac acccctccta 2100 ggacacacct aaaaggtact gacatcatgt cacctcctca tctttcaggg tagcaaggtt 2160 ggaatctcct gaatacagcc cctcaagccc taaaacctct tatctattac ctcgggttca 2220 ttgtccagga aggggaggag aacttgaact tgtagtcaca gaagggtgct gagaactaac 2280 cagcaggacg gctcagccct gggaactgca gaggggtgag gctggggaga gaggaggctg 2340 gagcagcact ggtgacactg aacagtgtca ggaggaagtg acggatgcag cgcccccatc 2400 ccataggcag agctgtcatg tgggatgagg gacagtgttg ggagccacca aggaaaccca 2460 gaggtggggg agcagagagc agaagggggc atgtgatgct gggcagtgaa agggaggaca 2520 ggcaaaggct gggttgaggt ttgtaggggg aatgagatga ggcagtggag ccatgtgaca 2580 gggactgagg gtagattact ggagctccct gcgtagaatg aatgttcaat caaaacctgc 2640 tggagggaga gctggagcca taggggagtg ggtaaagtgg gcagggttga ttccacaatt 2700 ccctgcatgc tcccccaact ccacacacat ccccaacctc aaacagggca caagaccaaa 2760 gggctgagga gccaggctat agcttaaaga ggctggggga gaaaagcttg gctgagacaa 2820 cccataggga gctagaggtt tttaatatat cctattctga ataagagacg aattcattca 2880 gatcagtggt ttcaaaccgt gctctgggca actcaattgc taagggttcc acaaacagga 2940 taaagtttct tatatacaaa aaaaatgaag gtttcaaatt acaccataaa acccctcatt 3000 gcttatgtct acttggcagg taaaattcca tttcaaaagt taaatgtact taaaaaatta 3060 cctaagactg ggtaaattaa aaaaattaaa tgttgcaaag aaaaaattca aaattcttat 3120 tcttgaatga aaaacgttct cttactggtg attgaggagg agaaacaaag actaacaaat 3180 gaaaatggga gaatccacac tcagagtggg gcaattgaac aggcaggggc ggatggatgg 3240 cagaggagga ggaatctgga ctcaaggagc tggggggccc tgggcctgga atttcagggt 3300 ctggggccca aggcaccagg agaagaggca ggtcaggata tctgagtcaa gacctgggat 3360 cttgccttag caatgacact ggagactaaa ggtggactcc atggtgccct tgagcccagc 3420 cctaccccat ctccactatc ctctgccacc agctgtgcaa cttctgcaag gggtgaggtt 3480 aataaactgg agaagttaat ttgtggagca tgaaacagat gagcagaaca atcacagcac 3540 cttaatttcc ccagtgtgcc caagaacaga gcaggcctga agacactcaa acagaaacaa 3600 acatgtgccg tgtcactgat aattctgtgt agacacacac ctgccagaca ctgctcatgg 3660 cactccctag gaagaacagc atgtgggaaa ggctgccaaa attgttcatg taaaaattac 3720 atcaatgctg tcttcctcgg tgctgcctat gcagctggca gccatctctt cctccacatc 3780 atggcctccc tcagactcct catgaaggat aagatcctca aaaagaggac caacaagttc 3840 atgaggcacc aatcagactg aaatgtcaaa attaagcata actggcggaa acccagaggt 3900 cttaacagta gggttcgtag aaggtccaag ggccagatct tgatgcccaa cattgcttat 3960 gggagcaaca acaacaacaa aaaacacatg ctgcccagtg gcttccagaa gtttctggcc 4020 cacagcctca aggagctgaa agtgctgctg atgtgcaaca aatcttactg tgctgagatc 4080 gctcacaaaa tttcctccag aactgcaaag tcatcatgga aagagtcacc cagccggcca 4140 tcagagtcac caaccccagt accagggtgc acagctaaga aaatgagtag aaagttcatg 4200 tccacgtttt gtgtgtaaat aaaaccataa aaactgccaa aaaaaattac atcaatgcct 4260 ctaaacccaa aggactctac ccccacaggt ccctggttgt tgtggtgatt ttcattgtgt 4320 aaaatacttt ccacatcttt tgacaccaag tctttctgca gccatgtttg aaaattaact 4380 ttcaggctac agagtctttc ttataccaaa gttgaagaaa gttttaagaa atatatttct 4440 acatctccta catgcaaaac aacaggagca agttgaggaa ttctcaagaa actggtcgag 4500 aagagagagc gcttagctat ggaaaagaga aagaaggaag ggagggcttc ctggaggagg 4560 tggcatttga accaggactg acatcaggat ggaaatgtca gtcagggagt gaagtagggg 4620 gagcagctcc gccctccacg tccccagctc ctcccgcccc tgttttttct cccagtgacc 4680 ccacgtgaaa cgtctccgcc tcctccagcc accagcagaa gggactgcct tcccctcagt 4740 gctcgcccct ccctagtgat cactcagtgc ccctgagctc attcttttca gtaaattctc 4800 tctctgcgtg gtgagaaaac aggcctggag aggctctgcg acccgcttag gaccacagaa 4860 ctcggtacta ggaaaactcc tattttaaaa tccagccctg agtgggaaga tttgggaaga 4920 atcgttaata ttgagagaga gagggagaaa gaggattaga tgagagtggc gcctccgctc 4980 atgtccgccc cctccccgca gagaattacg tgtaccagtt acggcaggaa tgctacgcgt 5040 ttaatgggac acagcgcttc ctggagagat acatctacaa ccgggaggag tacgcgcgct 5100 tcgacagcga cgtgggggag ttccgggcgg tgacggagct ggggcggcct gctgcggagt 5160 actggaacag ccagaaggac atcctggagg aggagcgggc agtgccggac aggatatgca 5220 gacacaacta cgagctggac gaggccgtga ccctgcagcg ccgaggtgag tgagggcttt 5280 gggccggcgg tcccagggca gccccgcggg cccgtgccca gggcgcagga gcagccgggt 5340 tggcctaagg gaccttagtg ccgggcggaa aggggacttt gggttgggga ttcatggggg 5400 gagcccatct ggagcttgtc aggggagcga gcgcggggac ctggactggg ctgagcatgg 5460 agtgaggagg acgggagcag agagaccccg gggacttcat caggcctggc agctgactgc 5520 atgtggggtg aaaaaaagga agccacagga cagcgcacaa gggtatggtg tggagatgga 5580 ggtggagatg gcacagcagg ccacacagag aagaaaccta cagggagtta gctgggtttg 5640 aggtgcttga ggggcagatg ggtggtctga tgggcaggta gacagaaggg tctgcagccg 5700 gggaggagac tgagatacat gagaccatcc agggagaggg gacccagggg gaagagcaaa 5760 ggactggatc ctgggaactg gacagttgtg atttggccaa gacagaaaag cctgtgaaag 5820 agaccaataa aacccaagtg cagtgtgagg agaggcccgc agagaagagt cttggaagct 5880 gaggggaggt gacctcagca gcacagtgga cagcggtgcc agtgacttgg gaaggtcaga 5940 aaacagaaga tggaaagtgg gtttggaaac cagggagacc tggggagagc aggttggccg 6000 cagcggcagg agctggaatg ggagggggtg catgaggctg agtgtggcgc atcctcctcg 6060 gggctgagat ggattttact tgtcttgggt tccccacggc tgtcacaggg cagtgtctga 6120 gttcattcgt ctttttcctt caggaagtct gggtgtaaag ggatggagag aggtgaggtg 6180 tgtgcagtaa gaggatttct caaggatggg acaggaaggc cttggagctt tggcttcctc 6240 ctgtgaactt gtggggtggg gagcctggtg caccaacctt tgggacttga gggagtagta 6300 tcaggatgtg ggattgagcc ctggaccttt tttctagaaa gaggaaaaaa atgaagggag 6360 gaggaggagg aagctgggga gatcacacct ttgattttct tgttcctgga aagtgaaagg 6420 aagttcacct gctatgagtg agaaggtgga cacactgggt ggggatgagg tgagtgacat 6480 gagcttagga aagttgctga ggtaattggt tgagagaggt gttcaaataa aagtaatgca 6540 attggcaaaa actgttacta agactttgta gaggcacaaa tcagtgacat ggcagcatct 6600 tctttcacag taatcaactg ccagattgca gggagccctg ataccagcct aaggagtgtg 6660 agtttctcct ctaggcccac aggtccccaa cctcactcct ccgaagactc tcctggagat 6720 catctgtgat gcgcagatac ccagactcac tgccccgaga ctcagattcc ctgggtgggg 6780 aggtctgggg atctctgctt gtaatcagct ccctagaggt tcccatgtag ccggataagt 6840 attgtcagaa cactgaagat ttttgaaaaa tgaaaaagag aaggttggag atgtgtcttc 6900 agaagactac taagggtgct gggtagagga gggaccagag gcagggagat gaggtaggaa 6960 actgctatta tttgtcaggg aaattgcaat caagaaatga gttagaacag ggaaaacaca 7020 gaggcagggg agaggtggaa gggggaggaa aggagtagtg acaattccag ggtgtatgct 7080 cacccaaatc tagaagtaat tgagcaaatg ttttctgggc attagagaag gcaactagaa 7140 caaacaggaa tccttgcctt ggtgaaatgt atttgaactg ggtcagaaat gaggccattg 7200 ggtatcaagc cttaactcca gcgccccctg gaggtcgctg atgtggctcc aggctgacct 7260 gctcctgtca aagaatattg agcaagatgc ctctcatgga atgttctggg accttaaaac 7320 agatacccaa gtattccccc tgatttcatg gttcccagaa gctctatggg gaagaaattg 7380 tacgtaattc acaactgaga tttagacata agttgaatag tgtaatggac gttgagttaa 7440 ccgaggtaat gaagtagtga gacacaggtg cccctgaaat aaactcacat tgagggaaga 7500 ggctgacaat gtggatcagt ctgtaaacaa ggcaaaaata caatagggag taagggttgt 7560 gtgtcagttc aagactgtac ttttacctgg cccagcgcca tgttggggta tttgtgttct 7620 ccaggaagta gaaaggaaag aactgagtga ttagggacct agaagactaa tttgagacat 7680 tcctcttgat gaactgttct ctagggtagt cctctgaaag agctgttctc tagtggatct 7740 ccctgaatga actgttctct aggagcactt gacccttttc tgtgtttgtt ttttgttttg 7800 tgtttgtgtt tgtttttgag acaggttctc gctctgtctc ccaggctgga gtgctgtggc 7860 gccatcatga ctcactgcag cctcaacctc ctgggctcaa gtgatcctcc tgcctcagcc 7920 tcccatgtag ctagaactac agatacatgt accaccatgt ctggctaatt tatttttctt 7980 tttagagatg ggttctcact atgttgccca ggctggtctc gaaaccctgg gctcaagtga 8040 tcctcacgcc tcagcctccc aaagtgctaa gattataggc atgaccacca tgcctggcct 8100 tttctgcctt ccgagaagga aaaaggtact ggtggcagag atccaaaaga aaagttgcca 8160 gtggcagtgt ggaaattgac ctgagaacaa cagaacaagc tggggcacaa atgcaaagat 8220 gcagagggag gcaacatctg gttatctgtg agaccttcat gggacctgaa gacacatcct 8280 tttggaaaag gatgggattt ctactactca agcatgtagg ggctcaggat attatgtaaa 8340 tatgaagatt ttgagttttt gtaagtgagg taaaaaaaat acccaggtta tttacagaat 8400 aagacatgtc aagctctctt cattttcttt gtattttcat gaaataaagg tattagatta 8460 acaggccacc ataatgccat tgtctgtata tcttaatttc aagatattat ttgagtaatt 8520 tttgcatcct ttgtatcaag atagaacttt gaaaagacag gtaatttcac agttgattaa 8580 atattctttg cccaaattac ttttggttaa aatttctcct atatgtgcta cagagtgcaa 8640 actctgtctc cctgccattc cgctatatac ttactaatta ttattttatt caagatcatg 8700 catgctctac ttgaaggtct atcttttcag tgctaccctt acccactagc ctaatcacat 8760 tatatctatt ttcaacatct aggaatcaat tacgtagtga acatgcctaa gaaataataa 8820 tctgggcaga tgcagtggct caggcctgta atcccagcac tttgagaggc tgagcgggtg 8880 gatcacttga ggtcaggagt tggtcaagtg ctcctagaga accagcctga ccaacatgga 8940 gaaaccttgt ctctactgat aatacaaaaa ttagccaggt gaggtggcag gcacctataa 9000 tcccagctat tcgggaggct gaggaaggag aattgcttga acccctgagg tggaggttgc 9060 agtgagccaa tattgcgcca ctgcattcca gacttggcaa cagagcgaca ctccacctca 9120 acaaaaagaa agaaagagcg agattacgtc tcaaaaaagg aaggaaggaa ggacaatctc 9180 aaatgctatt tcattatttt ccttccccac tcgtagtcca gcctaaggtg aacgtttccc 9240 cctccaagaa ggggcccctg cagcaccaca acctgcttgt ctgccacgtg acagatttct 9300 acccaggcag cattcaagtc cgatggttcc tgaatggaca ggaggaaaca gctggggtcg 9360 tgtccaccaa cctgatccgt aatggagact ggaccttcca gatcctggtg atgctggaaa 9420 tgacccccca gcagggagac gtctacatct gccaagtgga gcacaccagc ctggacagtc 9480 ctgtcaccgt ggagtggagt gagtctctga tgaccgtcta gaccccacct ctgaagagca 9540 ggggactctc tggctctggg gtccactcat cttatcttct gcatctatac cctggggcca 9600 tgtccaaacc ccatctttct tctataccag ctcctgagca tagtttgaag ccagggcaat 9660 ggagacttcc tgaccttggc ttaggggttc ctgaagattc atagttctcc cccttgtcag 9720 agaatctagg gacactggct gatctcgaaa ccctcacaca caggaactga cctcacacat 9780 aggaacagtt ctcttctttc agcattttag cctcttctca ggcattttga gaggcaactt 9840 ctagaatcag catttgccac cttgttgagg tcacacccct gttccggaca tgagggtggc 9900 tctttctgaa tttcctctta gcaagctttt tcccctgcac tgtcttcatc ccgatattct 9960 gcatcacgct ccagaatctc agacaggaca tgagtaggga tgcagctggt ggaggtgaca 10020 ctaaacctgg gtctgtcctt cccagaggca cagtctgatt ctgcccggag taagacattg 10080 acgggagctg ggggcttcgt gctggggctc atcatctgtg gagtgggcat cttcatgcac 10140 aggaggagca agaaaggtga gaaagcctgc aaggtgagcg ggacctacct tcccctggca 10200 tattcacact tactccatga tgagggttca gacagaaaag aaatgtcaga aagctctaga 10260 gaccactgaa atcagatagt cggggaacaa acatgaccta tggcgagagg gggatcccag 10320 gctgggatct taatgcagcc agatgcatga ggtcccaggt gctcagactc ctgcggggca 10380 tccattgagt ggtggtcaat ggaatttggt gggatggaaa tgtttctcta actatctgag 10440 gtggtttcaa tggctgaata cataaccttt cctctttcat ttcagttcaa cgaggatctg 10500 cataacaggt aatattcctg ctttgatttc cttggggggt gggttacagg aggatatgac 10560 tcctttctgt gcattgtaat actgaggctc ctccaggaag ggaatctcag gcatgaaccc 10620 ctctttcaac ctcagctctc gggtgagtag ggaaaaagca ttgcacggct ccattgctga 10680 aggaagcaga gatcagttct gttctttatc agcctaagat gcagcctctc accataattt 10740 ttctctcctg gacttaaagg aaggaggcca gcaacctggg ataacttgtc ctttaccccc 10800 acagggttcc tgacctcacc gaaaagacta atgtgcctta gaacaagcat ttgctgtgtt 10860 ttgttagcac ctggttccag gacagaccct cagcttccca agaggatact gctgccaaga 10920 acttgctctg aagtcagttt ctatcgttct gctctttgat tcaaagcact gtttctctca 10980 ctgggcctcc aaccatgttc ccttcttctt agcaccacaa ataatcaaaa cccaacataa 11040 gtgtttgttt tcctttaaaa atatgcatca aatcgtctct cattactttg agggttttag 11100 taaacagtag gagttaataa agaagttcat tttggtttac acataggaaa gaagagaagc 11160 atgaaagtgg agatatgtta actattgtat aatgtggcct gttatacatg acactcttct 11220 gaattgactg tatttcagtg agctgccccc aaatcaagtt tagtgccctc atccatttat 11280 gtctcagacc gctattctta actattcaat ggtgagcaga ctgcaaatct gcctgatagg 11340 acccgtattc ccacagcact aattcaacat atatcttact gagagcatgt tttatcatta 11400 ccattaagaa gttaaatgaa catcagaatt taaaatcata aatataatct aatacacttt 11460 aa 11462 //