Dbfetch
ID LT718960; SV 1; linear; genomic DNA; STD; HUM; 11465 BP. XX AC LT718960; XX DT 28-JAN-2017 (Rel. 131, Created) DT 28-JAN-2017 (Rel. 131, Last updated, Version 1) XX DE Homo sapiens HLA-DPB1 gene for MHC class II antigen, cell line DE DKMS-LSL-DPB1-1622, allele HLA-DPB1*03:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-11465 RA Albrecht V.; RT ; RL Submitted (25-JAN-2017) to the INSDC. RL Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 43, Saxony, RL 01307 Dresden, GERMANY. XX RN [2] RA Lang K., Schoefl G., Schmidt A., Lange V.; RT "Complementing the HLA-DPB1 Database: Full-Length Gene Characterization of RT all Common and Well-Documented Alleles"; RL Unpublished. XX DR MD5; 8f618e15922f27f94ad0b6c9ac4960e2. DR IMGT/HLA; HLA-DPB1*10:01:01:02; HLA17140. XX FH Key Location/Qualifiers FH FT source 1..11465 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL-DPB1-1622" FT /db_xref="taxon:9606" FT exon 1..466 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*03:new" FT /number=1 FT CDS join(367..466,5001..5264,9214..9495,10043..10153, FT 10483..10502) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*03:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:K0JCD0" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:K0JCD0" FT /protein_id="SJK83275.1" FT /translation="MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYVHQLRQECY FT AFNGTQRFLERYIYNREEFVRFDSDVGEFRAVTELGRPDEEYWNSQKDILEEERAVPDR FT VCRHNYELDEAVTLQRRVQPKVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQ FT EETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYICQVEHTSLDSPVTVEWKAQSDSA FT RSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRGSA" FT intron 467..5000 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*03:new" FT /number=1 FT exon 5001..5264 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*03:new" FT /number=2 FT intron 5265..9213 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*03:new" FT /number=2 FT exon 9214..9495 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*03:new" FT /number=3 FT intron 9496..10042 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*03:new" FT /number=3 FT exon 10043..10153 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*03:new" FT /number=4 FT intron 10154..10482 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*03:new" FT /number=4 FT exon 10483..11465 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*03:new" FT /number=5 XX SQ Sequence 11465 BP; 3104 A; 2543 C; 2970 G; 2848 T; 0 other; taatccctgt agatgggcca gcagaatatt tgagatcacc ttcagagcaa agaaaacgca 60 taatctcccc aaatatcatg acttatctga ctggttaaaa tgagtatcac tgtctttcct 120 ccgtcatctt aagtgcatca caggctttat attttcagac ctttcatact aactttctgc 180 ctagtgagca atgactcata caaagctcag tgtccattgg ttcttttctc agactctgtc 240 caatcccagg gtcacagaag actacttggg ttcatggtct ctaatatttc aaacaggagc 300 tccctttagc gagtccttct tttcctgact gcagctcttt tcattttgcc atccttttcc 360 agctccatga tggttctgca ggtttctgcg gccccccgga cagtggctct gacggcgtta 420 ctgatggtgc tgctcacatc tgtggtccag ggcagggcca ctccaggtaa gagccgagct 480 gccattcttg gagggtctgg ctcagggaac aattcctagg ggacgttatc tttaagggat 540 caaattctga gacaggctgc gggggctcct gccctaaggc agtgtcctct cttcccagct 600 agagaaagag gttcatcccc tataggatag cttgctaccc tactggccta ttctctctcc 660 aaggacatgg gtacagtaaa cagagagagg tgcccagtgg tcagtatgct tgtctttggg 720 gaaaatggga ccaagaggtc caggataacc ttggacagac aaggtttgca gagagagaag 780 ttggcaagtg caggctcctg ggcgtgttca catctgcatc cagcctggag gggactcagg 840 cagagagccc taagctggag tgtccaggct ctgaggatca ctgaggattc agtgctcacg 900 aagaatgcct cttattcccc agggtggagc aggagcccac accccttgga caattaagga 960 gagaagggag ggagggggat aggttttagc ccctgaaggc attctcatta aaggtacttc 1020 tcccagcctc cccagaactt ggttagggta ctagagtggg ttgcgacttg taggaagaat 1080 gagatgaggt tgtgtgggtg catgacaggg attgagtgta ggttatcaga cagccaagga 1140 agcagtaacc aagtgaaaaa tctcttcttc ctgctgcctc cctgtggctg gtgtaatatt 1200 atggcatcta tgatccattg tttttctctc aggatactct caggatattt ctttttatat 1260 atatatatac tttaagttct agggtacatg tgcacaacgt gcaggtttgt tacatatgta 1320 tacatgtgcc atgttggtgt gctgcaccca ttaactcgtc atttacatta ggtatatttc 1380 ctaatgctat ccctcccccc tccccccacc ccacaacagg ccccggtgta tgatgttccc 1440 cttcctgtgt ccatgtgttc tcattgttca gttcccacct atgagtgaga acatgtggtc 1500 tttggttttt tgtccttgca atagtttgct gtgaatgatg gtttccagct tcctccatgt 1560 ccctacaaag gacatgaact catccttttt tatggctgca cagtattcca tggtgtatat 1620 gtgtgcattt tcttaatcca gtctatcact gatggacagt tgggttggtt ccaagtcttt 1680 gctattgtga atagtgccgc aataaacata tgtgtgcatg tgtctttata gcagcatgat 1740 ttataatcct ttgggtatat acccagtaat gggatggctg ggtcaaatgg tatttctagt 1800 tctagatcct tgaggaattg ccacaatgtc ttgagatacc atctcacacc agttaaaatg 1860 gcgatcatta aaaagtcagg aaacaacagg tgctggagag gatgtggaga aataggaaca 1920 cttttactct gttggtggga ctgtaaacta gttcaaccat tgtactctca ggacatttct 1980 agtccaaatt tacaccaaca ctctgagagg aaggactgca aagtaggtac cttagttttc 2040 cactgacttc cacttttcct gcttacaccc ttcctcctag acctctccac acccctccta 2100 ggacacacct agaaggtact gacatcatgt cacctcctca tctttcaggg tagcaaggtt 2160 ggaatctcct gaatacagcc cctcaagccc taaaacctct tatctattac ctcgggttca 2220 tgtccaggaa ggggaggaga acttgaactt atagtcacag aagggtgctg agaactaacc 2280 agcaggacgg ctcagccctg ggaactgcag aggggtgagg ctggggagag aggaggctgg 2340 agcagcactg gtgacactga acagtgtcag gaggaggtga cggatgcggc atccccatcc 2400 cataggcaga gctgtcatgt gggatgaggg acagtgttgg gagtcaccga ggaaacccag 2460 aggtggggga gcagagagca gaagggggca tgtgatgctg ggcagtgaaa gggaggacag 2520 gcaaaggctg ggttgaggtt tgtaggggga atgagatgag gcagtggagc catgtgacag 2580 ggactgaggg tagattactg gagctccctg cgtagaatga atgttcaatc aaaacctgct 2640 ggagggagag ctggagccat aggggagtgg gtaaagtggg cagggctgat tccacaattc 2700 cctgcatgct cccccaactc cacacacatc cccaacctca aacagggcac aagaccaaag 2760 ggctgaggag ccaggctata gcttaaagag gctgggggag aaaagcttgg ctgagacaac 2820 ccatagggag ctagaggttt ttaatatatc ctattctgaa taagagacga attcattcag 2880 atcagtggtt tcaaaccgtg ctctgggcaa ctcaattgct aagggttcca caaacaggat 2940 aaagtttctt atatacaaaa aaaatgaagg tttcaaatta caccataaaa cccctcattg 3000 cttatgtcta cttggcaggt aaaattccat ttcaaaagtt aaatgtactt aaaaaattac 3060 ctaagactgg gtaaattaaa aaaattaaat gttgcaaaga aaaaattcaa aattcttatt 3120 cttgaatgaa aaacgttctc ttactggtga ttgaggagga gaaacaaaga ctaacaaatg 3180 aaaatgggag aatccacact cagagtgggg caattgaaca ggcaggggcg gatggatggc 3240 agaggaggag gaatctggac tcaaggagct ggggggccct gggcctggaa tttcagggtc 3300 tggggcccaa cgcaccagga gaagaggcag gtcaggatat ctgagtcaag acctgggatc 3360 ttgccttagc aatgacactg gagactaaag gtggactcca tggtgccctt gagcccagcc 3420 ctaccccatc tccactatcc tctgccacca gctgtgcaac ttctgcaagg ggtgaggtta 3480 ataaactgga gaagttaatt tgtggagcat gaaacagatg agcagaacaa tcacagcacc 3540 ttaatttccc cagtgtgccc aagaacagag caggcctgaa gacactcaaa cagaaacaaa 3600 catgtgccgt gtcactgata attctgtgta gacacacacc tgccagacac tgctcatggc 3660 actccctagg aagaacagca tgtgggaaag gctgccaaaa ttgttcatgt aaaaattaca 3720 tcaatgctgt cttcctcggt gctgcctatg cagctggcag ccatctcttc ctccacatca 3780 tggcctccct cagactcctc atgaaggata agatcctcaa aaagaggacc aacaagttca 3840 tgaggcacca atcagactga aatgtcaaaa ttaagcataa ctggcggaaa cccagaggtc 3900 ttaacagtag ggttcgtaga aggtccaagg gccagatctt gatgcccaac attgcttatg 3960 ggagcaacaa caacaacaaa aaacacatgc tgcccagtgg cttccagaag tttctggccc 4020 acagcctcaa ggagctgaaa gtgctgctga tgtgcaacaa atcttactgt gctgagatcg 4080 ctcacaaaat ttcctccaga actgcaaagt catcatggaa agagtcaccc agccggccat 4140 cagagtcacc aaccccagta ccacggtgca cagctaagaa aatgagtaga aagttcatgt 4200 ccacgttttg tgtgtaaata aaaccataaa aactgccaaa aaaaattaca tcaatgcctc 4260 taaacccaaa ggactctacc cccacaggtc cctggttgtt gtggtgattt tcattgtgta 4320 aaatactttc cacatctttt gacaccaagt ctttctgcag ccatgtttga aaattaactt 4380 tcaggctaca gagtctttct tataccaaag ttgaagaaag ttttaagaaa tatatttcta 4440 catctcctac atgcaaaaca acaggagcaa gttgaggaat tctcaagaaa ctggtcgaga 4500 agagagagcg cttagctatg gaaaagagaa agaaggaagg gagggcttcc tggaggaggt 4560 ggcatttgaa ccaggactga catcaggatg gaaatgtcag tcagggagtt aagtaggggg 4620 agcagctccg ccctccacgt ccccagctcc tcccgcccct gttttttctc ccagtgaccc 4680 cacgtgaaac gtctccgcct cctccagcca ccagcagaag ggactgcctt cccctcagtg 4740 ctcgcccctc cctagtgatc actcagtgcc cctgagctca ttcttttcag taaattctct 4800 ctctgcgtgg tgagaaaaca ggcctggaga ggctctgcga cccgcttagg accacagaac 4860 tcggtactag gaaaactcct attttaaaat ccagccctgg gtgggaagat ttgggaagaa 4920 tcgttaatat tgagagagag agggagaaag aggattagat gagagtggcg cctccgctca 4980 tgtccgcccc ctccccgcag agaattacgt gcaccagtta cggcaggaat gctacgcgtt 5040 taatgggaca cagcgcttcc tggagagata catctacaac cgggaggagt tcgtgcgctt 5100 cgacagcgac gtgggggagt tccgggcggt gacggagctg gggcggcctg atgaggagta 5160 ctggaacagc cagaaggaca tcctggagga ggagcgggca gtgccggaca gggtatgcag 5220 acacaactac gagctggacg aggccgtgac cctgcagcgc cgaggtgagt gagggctttg 5280 ggccggcggt cccagggcag ccccgcgggc ccgtgcccag ggcgcaggag cagccgggtt 5340 ggcctaaggg accttagtgc cgggcggaaa ggggactttg ggttggggat tcatgggggg 5400 agcccatctg gagcttgtca ggggagcgag cgcggggacc tggactgggc tgagcatgga 5460 gtgaggagga cgagagcaga gagacccccg ggacttcatc aggcctggca gctgactgca 5520 tgtggggtga aaaaaggaag ccacaggaca gcgcacaagg gtatggtgtg gagatggagg 5580 tggagatggc acagcaggcc acacagagaa gaaacctaca gggaggtagc tgggtttgag 5640 gtgcttgagg ggcagatggg tggtctgatg ggcaggtaga cagaagggtc tgcagccggg 5700 gaggagactg agatacatga gaccatccag ggagagggga cccaggggga agagcaaagg 5760 actggatcct gggaactgga cagttgtgat ttggccaaga cagaaaagcc tgtgaaagag 5820 accaaaaaaa cccaagtgca gtgtgaggag aggcccgcag agaagagtct tggaagctga 5880 ggggaggtga cctcagcagc acagtggaca gcggtgccag tgacttggga aggtcagaaa 5940 acagaagatg gaaagtgggt ttggaaacca gggagacctg gggagagcag gttggccgca 6000 gcggcaggag ctggaatggg agggggtgca tgaggctgag tgtggcgcat cctcctcggg 6060 gctgagatgg attttacttg tcttgggttc cccacggctg tcacagggca gtgtctcagt 6120 tcattcgtct ttttccttca ggaagtctgg gtgtaaaggg atggagagag gtgaggtgtg 6180 tgcagtaaga ggatttctca aggatgggac aggaaggcct tggagctttg gcttcctcct 6240 gtgaacttgt ggggtgggga gcctggtgca ccaacctgag ggacttgagg gagtagtatc 6300 aggatgtggg attgagccct ggaccttttt tctagaaaga ggaaaaaaat gaagggagga 6360 ggaggaggaa gctggggaga tcacaccttt gattttcttg ttcctggaaa gtgaaaggaa 6420 gttcacctgc tatgagtgag aaggtggaca cactgggtgg ggatgaggtg agtgacatga 6480 gcttaggaaa gttgctgagg taattggttg agagaggtgt tcaaataaaa gtaatgcaat 6540 tggcaaaaac tgttactaag actttgtaga ggcacaaatc agtgacacgg cagcatcttc 6600 tttcacagta atcaactgcc agattgcagg gagccttgat accagcctaa ggagtgtgag 6660 tttctcctct aggcccacag gtccccaacc tcacttctcc gaagactctc ctggagatca 6720 tctgtgatgc gcagataccc agactcactg ccccgagact cagattccct gggtagggag 6780 gtcgggggat ctctgcttgt aatcagctcc ctagaggttc ccatgtagcc ggataagtat 6840 tgtcagaaca ctgaagattt ttgaaaaatg aaaaagcgaa ggttggagat gtgtcttcag 6900 aagactacta agggtgctgg gtagaggagg gaccagaggc agggaaatga ggtaggaaac 6960 tgctattatt tgtcagggaa attgcaatca agaaatgagt tagaacaggg aaaagacaga 7020 ggcaggggag aggtggaagg gggaggaaag gagtagtgac aattccaggg tgtatgctca 7080 cccaaatcta gaagtaattg agcaaatgtt ttctgggcat tagagaaggc aactagaaca 7140 aacaggaatc cttgccttgg tgaaatgtat ttgaactggg tcagaaatga ggccattggg 7200 tatcaagcct taactccagc gccccctgga ggtcgctgat gtggctccag gctgacctgc 7260 tcctgtcaaa gaatattgag caagatgcct ctcatggaat gttctgggac cttaaaacag 7320 atacccaagt attccccctg atttcatggt tcccagaagc tctatgggga agaaattgta 7380 cgtaattcac aactgagatt tagacataag ttgaatagtg taatggacgt tgagttaacc 7440 gaggtaatga agtagtgaga cacaggtgcc cctgaaataa actcacattg agggaagagg 7500 ctgacaatgt ggatcagtct gtaaacaagg caaaaataca atagggagta agggttgtgt 7560 gtcagttcaa gactgtactt ttacctggcc cagcgccatg ttggggtatt tgtgttctcc 7620 aggaagtaga aaggaaagaa ctgagtgatt agggacctag aagactaatt tgagacattc 7680 ctcttgatga actgttctct agggtagtcc tctgaaagag ctgttctcta gtggatctcc 7740 ctgaatgaac tgttctctag gagcacttga cccttttctg tgtttgtttt ttgttttgtg 7800 tttgtgtttg tttttgagac aggttctcgc tctgtctccc aggctggagt gctgtggcgc 7860 catcatgact cactgcagcc tcaacctcct gggctcaagt gatcctcctg cctcagcctc 7920 ccatgtagct agaactacag atacatgtac caccatgtct ggctaattta tttttctttt 7980 tagagatggg ttctcactat gttgcccagg ctggtctcga aaccctgggc tcaagtgatc 8040 ctcacgcctc agcctcccaa agtgctaaga ttataggcat gaccaccatg cctggccttt 8100 tctgccttcc gagaaggaaa aaggtactgg tggcagagat ccaaaagaaa agttgccagt 8160 ggcagtgtgg aaattgacct gagaacaaca gaacaagctg gggcacaaat gcaaagatgc 8220 agagggaggc aacatctggt tatctgtgag accttcatgg gacctgaaga cacatccttt 8280 tggaaaagga tgggatttct actactcaag catgtagggg ctcaggatat tatgtaaata 8340 tgaagatttt gagtttttgt aagtgaggta aaaaaatacc taggttattt acagaataag 8400 acatgtcaag ctctcttcat tttctttgta ttttcatgaa ataaaggtat tagattaaca 8460 ggccaccata atgccattgt ctgtatatct taatttcaag atattatttg agtaattttt 8520 gcatcctttg tatcaagata gaactttgaa aagacaggta atttcacagt tgattaaata 8580 ttctttgccc aaattacttt tggttaaaat ttctcctata tgtgctacag agtgcaaact 8640 ctgtctccct gccattccgc tatatactta ctaattatta ttttattcaa gatcatgcat 8700 gctctacttg aaggtctatc ttttcagtgc tacccttacc cactagccta atcacattat 8760 atctattttc aacatctagg aatcaattac gtagtgaaca tgcctaagaa ataataatct 8820 gggcagatgc agtggctcag gcctgtaatc ccagcacttt gagaggctga gcgggtggat 8880 cacttgaggt caggagttgg tcaagtgctc ctagagaacc agcctgacca acatggagaa 8940 accttgtctc tactgataat acaaaaatta gccaggtgag gtggcaggca cctataatcc 9000 cagctattcg ggaggctgag gaaggagaat tgcttgaacc cctgaggtgg aggttgcagt 9060 gagccaatat tgcgccactg cattccagac ttggcaacag agcgacactc cacctcaaca 9120 aaaagaaaga aagagcgaga ttacgtctca aaaaaggaag gaaggaagga caatctcaaa 9180 tgctatttca ttattttcct tccccactcg tagtccagcc taaggtgaac gtttccccct 9240 ccaagaaggg gcccctgcag caccacaacc tgcttgtctg ccacgtgaca gatttctacc 9300 caggcagcat tcaagtccga tggttcctga atggacagga ggaaacagct ggggtcgtgt 9360 ccaccaacct gatccgtaat ggagactgga ccttccagat cctggtgatg ctggaaatga 9420 ccccccagca gggagacgtc tacatctgcc aagtggagca caccagcctg gacagtcctg 9480 tcaccgtgga gtggagtgag tctctgatga ccgtctagac cccacctctg aagagcaggg 9540 gactctctgg ctctggggtc cactcatctt atcttctgca tctataccct ggggccatgt 9600 ccaaacccca tctttcttct ataccagctc ctgagcatag tttgaagcca gggcaatgga 9660 gacttcctga ccttggctta ggggttcctg aagattcata gttctccccc ttgtcagaga 9720 atctagggac actggctgat ctcgaaaccc tcacacacag gaactgacct cacacatagg 9780 aacagttctc ttctttcagc attttagcct cttctcaggc attttgagag gcaacttcta 9840 gaatcagcat ttgccacctt gttgaggtca cacccctgtt ccggacatga gggtggctct 9900 ttctgaattt cctcttagca agctttttcc cctgcactgt cttcatcccg atattctgca 9960 tcacgctcca gaatctcaga caggacatga gtagggatgc agctggtgga ggtgacacta 10020 aacctgggtc tgtccttccc agaggcacag tctgattctg cccggagtaa gacattgacg 10080 ggagctgggg gcttcgtgct ggggctcatc atctgtggag tgggcatctt catgcacagg 10140 aggagcaaga aaggtgagaa agcctgcaag gtgagcggga cttaccttcc cctggcatat 10200 tcacacttac tccatgatga gggttcagac agaaaagaaa tgtcagaaag ctctagagac 10260 cactgaaatc agatagtcgg ggaacaaaca tgacctatgg cgagaggggg atcccaggct 10320 gggatcttaa tgcagccaga tgcatgaggt cccaggtgct cagactcctg cggggcatcc 10380 attgagtggt ggtcaatgga atttggtggg atggaaatgt ttctctaact atctgaggtg 10440 gtttcaatgg ctgaatacat aacctttcct ctttcatttc agttcaacga ggatctgcat 10500 aaacaggtaa tattcctgct ttgatttcct tggggggtgg gttacaggag gatatgactc 10560 ttttctgtgc attgtaatac tgaggctcct ccaggaaggg aatctcaggc atgaacccct 10620 ctttcaacct cggctctcgg gtgagtgggg aaaaagcatt gcacggctcc attgctgaag 10680 gaagcagaga tcagttctgt tctttatcag cctaagatgc agcctctcac cataattttt 10740 ctctcctgga cttaaaggaa ggaggccagc aacctgggat aacttgtcct ttacccccac 10800 agggttcctg acctcaccga aaagactaat gtgccttaga acaagcattt gctgtgtttt 10860 gttagcacct ggttccagga cagaccctca gcttcccaag aggatactgc tgccaagaag 10920 ttgctctgaa gtcagtttct atcgttctgc tctttgattc aaagcactgt ttctctcact 10980 gggcctccaa ccatgttccc ttcttcttag caccacaaat aatcaaaacc caacataagt 11040 gtttgttttc ctttaaaaat atgcatcaaa tcgtctctca ttacttttct ctgagggttt 11100 tagtaaacag taggagttaa taaagaagtt cattttggtt tacacgtagg aaagaagaga 11160 agcatgaaag tggagatatg ttaactattg tataatgtgg cctgttatac atgacactct 11220 tctgaattga ctgtatttca gtgagctgcc cccaaatcaa gtttagtgcc ctcatccatt 11280 tatgtctcag accgctattc ttaactattc aatggtgagc agactgcaaa tctgcctgat 11340 aggacccgta ttcccacagc actaattcaa catatatctt actgagagca tgttttatca 11400 ttaccattaa gaagttaaat gaacatcaga atttaaaatc ataaatataa tctaatacac 11460 tttaa 11465 //