Dbfetch
ID LT599431; SV 1; linear; genomic DNA; STD; HUM; 11517 BP. XX AC LT599431; XX DT 14-JUL-2016 (Rel. 129, Created) DT 14-JUL-2016 (Rel. 129, Last updated, Version 1) XX DE Homo sapiens, HLA-DPB1 gene for MHC class II antigen, cell line DE DKMS-LSL-DPB1-1368, allele HLA-DPB1*04:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-11517 RA Albrecht V.; RT ; RL Submitted (04-JUL-2016) to the INSDC. RL Research and Development, DKMS Life Science Lab, Fiedler Str. 43, Saxony, RL 01307 Dresden, GERMANY. XX RN [2] RA Lang K., Schoefl G., Schmidt A., Lange V.; RT "Complementing the HLA-DPB1 Database: Full-Length Gene Characterization of RT all Common and Well-Documented Alleles"; RL Unpublished. XX DR MD5; 3f5eeaf8894f1f69c62a6530a0612fad. DR IMGT/HLA; HLA-DPB1*17:01:01:01; HLA00534. XX FH Key Location/Qualifiers FH FT source 1..11517 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL-DPB1-1368" FT /db_xref="taxon:9606" FT exon 1..466 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*04:new" FT /number=1 FT CDS join(367..466,5002..5265,9266..9547,10095..10205, FT 10535..10554) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*04:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:A0A1C3PI11" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A1C3PI11" FT /protein_id="SBW38652.1" FT /translation="MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYVHQLRQECY FT AFNGTQRFLERYIYNREEFVRFDSDVGEFRAVTELGRPDEDYWNSQKDILEEERAVPDR FT MCRHNYELDEAVTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQ FT EETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSA FT RSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRGSA" FT intron 467..5001 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*04:new" FT /number=1 FT exon 5002..5265 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*04:new" FT /number=2 FT intron 5266..9265 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*04:new" FT /number=2 FT exon 9266..9547 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*04:new" FT /number=3 FT intron 9548..10094 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*04:new" FT /number=3 FT exon 10095..10205 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*04:new" FT /number=4 FT intron 10206..10534 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*04:new" FT /number=4 FT exon 10535..11517 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*04:new" FT /number=5 XX SQ Sequence 11517 BP; 3128 A; 2540 C; 2996 G; 2853 T; 0 other; taatccctgt agatgggcca gcagaatatt tgagatcacc ttcagagcaa agaaaacgca 60 taatctcccc aaacatcatg acttatctga ctggttaaaa tgagtatcac tgtctttcct 120 ccgtcatctt aagtgcatca caggctttat attttcagac ctttcatact aactttctgc 180 ctagtgagca atgactcata caaagctcag tgtccattgg ttcttttctc agactctgtc 240 caatcccagg gtcacagaag actacttggg ttcatggtct ctaatatttc aaacaggagc 300 tccctttagc gagtccttct tttcctgact gcagctcttt tcattttgcc atccttttcc 360 agctccatga tggttctgca ggtttctgcg gccccccgga cagtggctct gacggcgtta 420 ctgatggtgc tgctcacatc tgtggtccag ggcagggcca ctccaggtaa gagccgagct 480 gccattcttg gagggtctgg ctcagggaac aattcctagg ggacgttatc tttaagggat 540 caaattctga gacaggctgc gggggctcct gccctaaggc agtgtcctct cttcccagct 600 agagaaagag gttcatcccc tataggatag cttgctaccc tactggccta ttctctctcc 660 aaggacatgg gtacagtaaa cagagagagg tgcccagtgg tcagtatgct tgtctttggg 720 gaaaatggga ccaagaggtc caggataacc ttggacagac aaggtttgca gagagagaag 780 ttggcaagtg caggctcctg ggcgtgttca catctgcatc cagcctggag gggactcagg 840 cagagagccc taagctggag tgtccaggct ctgaggatca ctgaggattc agtgctcacg 900 aagaatgcct cttattcccc agggtggagc aggagcccac accccttgga caattaagga 960 gagaagggag ggagggggat aggttttagc ccctgaaggc attctcatta aaggtacttc 1020 tcccagcctc cccagaactt ggttagggta ctagagtggg ttgcgacttg taggaagaat 1080 gagatgaggt tgtgtgggtg catgacaggg attgagtgta ggttatcaga cagccaagga 1140 agcagtaacc aagtgaaaaa tctcttcttc ctgctgcctc cctgtggctg gtgtaatatt 1200 atggcatcta tgatccattg tttttctctc aggatactct caggatattt ctttttatat 1260 atatatatac tttaagttct agggtacatg tgcacaacgt gcaggtttgt tacatatgta 1320 tacatgtgcc atgttggtgt gctgcaccca ttaactcgtc atttacatta ggtatatttc 1380 ctaatgctat ccctcccccc tccccccacc ccacaacagg ccccggtgta tgatgttccc 1440 cttcctgtgt ccatgtgttc tcattgttca gttcccacct atgagtgaga acatgtggtc 1500 tttggttttt tgtccttgca atagtttgct gtgaatgatg gtttccagct tcctccatgt 1560 ccctacaaag gacatgaact catccttttt tatggctgca cagtattcca tggtgtatat 1620 gtgtgcattt tcttaatcca gtctatcact gatggacagt tgggttggtt ccaagtcttt 1680 gctattgtga atagtgccgc aataaacata tgtgtgcatg tgtctttata gcagcatgat 1740 ttataatcct ttgggtatat acccagtaat gggatggctg ggtcaaatgg tatttctagt 1800 tctagatcct tgaggaattg ccacaatgtc ttgagatacc atctcacacc agttaaaatg 1860 gcgatcatta aaaagtcagg aaacaacagg tgctggagag gatgtggaga aataggaaca 1920 cttttactct gttggtggga ctgtaaacta gttcaaccat tgtactctca ggacatttct 1980 agtccaaatt tacaccaaca ctctgagagg aaggactgca aagtaggtac cttagttttc 2040 cactgacttc cacttttcct gcttacaccc ttcctcctag acctctccac acccctccta 2100 ggacacacct agaaggtact gacatcatgt cacctcctca tctttcaggg tagcaaggtt 2160 ggaatctcct gaatacagcc cctcaagccc taaaacctct tatctattac ctcgggttca 2220 tgtccaggaa ggggaggaga acttgaactt atagtcacag aagggtgctg agaactaacc 2280 agcaggacgg ctcagccctg ggaactgcag aggggtgagg ctggggagag aggaggctgg 2340 agcagcactg gtgacactga acagtgtcag gaggaagtga cggatgcagc gcccccatcc 2400 cataggcaga gctgtcatgt gggatgaggg acagtgttgg gagtcaccga ggaaacccag 2460 aggtggggga gcagagagca gaagggggca tgtgatgctg ggcagtgaaa gggaggacag 2520 gcaaaggctg ggttgaggtt tgtaggggga atgagatgag gcagtggagc catgtgacag 2580 ggactgaggg tagattactg gagctccctg cgtagaatga atgttcaatc aaaacctgct 2640 ggagggagag ctggagccat aggggagtgg gtaaagtggg cagggctgat tccacaattc 2700 cctgcatgct cccccaactc cacacacatc cccaacctca aacagggcac aagaccaaag 2760 ggctgaggag ccaggctata gcttaaagag gctgggggag aaaagcttgg ctgagacaac 2820 ccatagggag ctagaggttt ttaatatatc ctattctgaa taagagacga attcattcag 2880 atcagtggtt tcaaaccgtg ctctgggcaa ctcaattgct aagggttcca caaacaggat 2940 aaagtttctt atatacaaaa aaaaatgaag gtttcaaatt acaccataaa gcccctcatt 3000 gcttatgtct acttggcagg taaaattcca tttcaaaagt taaatgtact taaaaaatta 3060 cctaagactg ggtaaattaa aaaaattaaa tgttgcaaag aaaaaattca aaattcttat 3120 tcttgaatga aaaacgttct cttactggtg attgaggagg agaaacaaag actaacaaat 3180 gaaaatggga gaatccacac tcagagtggg gcaattgaac aggcaggggc ggatggatgg 3240 cagaggagga ggaatctgga ctcaaggagc tggggggctc tgggcctgga attttagggt 3300 ctggggccca aggcaccagg agaagaggca ggtcaggata tctgagtcaa gacctgggat 3360 cttgccttag caatgacact ggagactaaa ggtggactcc atggtgccct tgagcccagc 3420 cctaccccat ctccactatc ctctgccacc agctgtgcaa cttctgctag gggtgaggtt 3480 aataaactgg agaagttaat ttgtggagca tgaaacagat gagcagaaca atcacagcac 3540 cttaatttcc ccagtgtgcc caagaacaga gcaggcctga agatactcaa acagaaacaa 3600 acatgtgccg tgtcactgat aattctgtgt agacacacac ctgccagaca ctgctcatgg 3660 cactccctag gaagaacagc atgtgggaaa ggctgccaaa attgttcatg taaaaattac 3720 atcaatgctg tcttcctcgg tgctgcctat gcagctggca gccatctctt cctccacatc 3780 atggcctccc tcagactcct catgaaggat aagatcctca aaaagaggac caacaagttc 3840 atgaggcacc aatcagactg aaatgtcaaa attaagcata actggcggaa acccagaggt 3900 cttaacagta gggttcgtag aaggtccaag ggccagatct tgatgcccaa cattgcttat 3960 gggagcaaca acaacaacaa aaaacacatg ctgcccagtg gcttccagaa gtttctggcc 4020 cacagcctca aggagctgaa agtgctgctg atgtgcaaca aatcttactg tgctgagatc 4080 gctcacaaaa tttcctccag aactgcaaag tcatcatgga aagagtcacc cagccggcca 4140 tcagagtcac caaccccagt accagggtgc acagctaaga aaatgagtag aaagttcacg 4200 tccacgtttt gtgtgtaaat aaaaccataa aaactgccaa aaaaaattac atcaatgcct 4260 ctaaacccaa aggactctac ccccacaggt ccctggttgt tgtggtgatt ttcattgtgt 4320 aaaatacttt ccacatcttt tgacaccaag tctttctgca gccatgtttg aaaattaact 4380 ttcaggctac agagtctttc ttataccaaa gttgaagaaa gttttaagaa atatatttct 4440 acatctccta aatgcaaaac aacaggagca agttgaggaa ttctcaagaa actggtcgag 4500 aagagagagc gcttagctat ggaaaagaga aagaaggaag ggagggcttc ctggaggagg 4560 tggcatttga accaggactg acatcaggat ggaaatgtca gtcagggagt taagtagggg 4620 gagcagctcc gccctccacg tccccagctc ctcccgcccc tgttttttct cccagtgacc 4680 ccacgtgaaa cgtctccgcc tcctccagcc accagcagaa gggactgcct tcccctcagt 4740 gctcgcccct ccctagtgat cactcagtgc ccctgagctc attcttttca gtaaattctc 4800 tctctgcgtg gtgagaaaac aggcctggag aggctctgcg acccgcttag gaccacagaa 4860 ctcggtacta ggaaaactcc tattttaaaa tccagccctg agtgggaaga tttgggaaga 4920 atccttaata ttgagagaga gagggagaaa gaggattaga tgagagtggc gcctccgctc 4980 atgtccgccc cctccccgca gagaattacg tgcaccagtt acggcaggaa tgctacgcgt 5040 ttaatgggac acagcgcttc ctggagagat acatctacaa ccgggaggag ttcgtgcgct 5100 tcgacagcga cgtgggggag ttccgggcgg tgacggagct ggggcggcct gatgaggact 5160 actggaacag ccagaaggac atcctggagg aggagcgggc agtgccggac aggatgtgca 5220 gacacaacta cgagctggac gaggccgtga ccctgcagcg ccgaggtgag tgagggcttt 5280 gggccggcgg tcccagggca gccccgcggg cccgtgccca gggcgcagga gcagccgggt 5340 tggcctaagg gaccttagtg ccgggcggaa aggggacttt gggttgggga ttcatggggg 5400 gagcccatct ggagcttgtc aggggagcga gcgcggggac ctggactggg ctgagcatgg 5460 agtgaggagg acgggagcag agagaccccc gggacttcat caggcctggc agctgactgc 5520 atgtggggtg agaaaaggag gccacaggac agcgcgcaag ggtgtggcgt ggagatggag 5580 gtggagatgg cacagcaggc cacacagaga agaaacctac agggaggtag ctgggtttga 5640 ggtgcttgag gggcagatgg gtggtctgat gggcaagtag acaaaagggt ctgcagccgg 5700 ggaggagact gagatacatg agaccatcca gggagagggg acccaggggg aagggcaaag 5760 gactggatcc tgggaactgg acagttgtga tttggccaag acagaaaagc ctgtgaaaga 5820 gaccaaaaaa acccaagtgc ggtgtgagga gaggcccgca gagaagagtc ttggaagctg 5880 aggggaggtg acctcagcag cacagtggac agcggtgcca gtgacttggg aaggtcagaa 5940 aacagaagat ggaaagtggg tttggaaacc agggagacct ggggagagca ggttggccgc 6000 agcggcagga gctggaatgg gagggggtgc atgaggctga gtgtggcgca tcctcctcgg 6060 ggctgagatg gattttactt gtcttgggtt ccccatggct ggcacagggc agtgtctgag 6120 ctcatttgtc ttttccttca ggaagtcggg gtgtaaaggg acggagagag gtgaggtgtg 6180 tgcagtaaga ggatttctca aggatgggac aggagggcct tggagctttg gcttcctcct 6240 gtgaatttgt ggggtgggga gcctggtgca ccaacctgag ggacctgagg gagtagtatc 6300 aggatgtggg attgagccct ggaccttttt tctagaaaga ggaaaaaatg aagggaggag 6360 gaggaggaag ctggggagat cacacctttg attttcttgt tcctggaaag tgaaaggaag 6420 ttcacctgct aggagtgaga aggtggacac actgggtggg gatgaggtga gtgacatgag 6480 cttaggaaag ttgctgaggt aattggttga gagaggtgtt caaataaaaa taacgcaatt 6540 ggcaaaaact gttactaaga ctttgtagag gcaccaatca gtgacatggc agcattttct 6600 ttcacagtaa tcaactgcca gattgcagac agccctgatg ccagcctaag gagtgtgggt 6660 ttctcctcca ggcccgcagg tccccaacct cactcctctg aagactcttc tggagatcct 6720 ctgtgatgca cagatctcca gactcagtgc ccccagactc agattccctg ggtggggagg 6780 tctggggatc tctgcttgta atcagctccc tagaggttcc catgtagcca gataagtatt 6840 gtcagaacac tgaagatttt tgaaaaatga aaaagagaag gttggagatg tgtcttcaga 6900 agactactaa gggtgctggc tagaggaggg accagaggca gggagatgag gtaggaaact 6960 gctattattt gtcagggaaa ttgcaatcaa ggcatgagtt agaacgggga aaacacagag 7020 gcaagggaga ggtggaaggg ggaggaaaga agtagtgaca attccagggt ggatgtccac 7080 ccaaatctag aagtaattga gcaaatgttt tctgggcatt agagaaggca actagaacaa 7140 acaggaatcc ttgccttggt gaaatgtatt tgaactgggt cagaaatgag gccattgggt 7200 atcaggcctt aactccagcg caccctggag gtcactgatg tggctccagg ctgacctgct 7260 cctgtcaaag aatattgagc aagatgcctc tcgtggaatg ttctgggacc ttaaaacaga 7320 tacccaagta ttccccctga tttcatggtt cccagaagct ctatggggaa gaaattgtag 7380 gtaattcaca actgagattt agacataagt tgaatagtgt aatggacatt gagttaaccg 7440 aggtaatgaa gtagtgagac acaggtgccc ctgaaataaa ctcacattga gggaagaggc 7500 tgacaatgtg gatcagtctg aaaacaaggc aaaaatacaa tagggagtaa gggttgtgtg 7560 tcagttcaag actgtacttt tacctggccc agcgccatgt tagggtattt gtgttctcca 7620 ggaagtagaa aggaaagaac tgagtgatta gggacctaga agactaattt gagacattcc 7680 tcttgatgag ctgttctcta gggtagtcct ctgaaagagc tgttctctag tggatctccc 7740 tgaatgaact gttctctagg agcacttgac ccttttctgt gtttgttttt tgttttgtgt 7800 ttgtgtttgt ttttgagaca ggttctcact ttgtctccca ggctggagtg ctgtggcacc 7860 atcatggctc actgcagcct caacctcctg ggctcaagtg atcctcctgc ctcagcctcc 7920 catgtagcta gaactacaga tacacgtacc accatgtctg gctaatttat ttttcttttt 7980 agagatgggt tctcactatg ttgcccaggc cggtctcaaa accctgggct caagtgatcc 8040 tcatgcctca acctcccaaa gtgctaagat tataggcatg accaccatgc ctggcctttt 8100 ctgctttctg aggaggaaaa aggtactggt ggcagagatc caaaagaaaa gttgccagtg 8160 gcagtgtgga aattcacctg agaacaacag gacaagctgg ggcacaaatg caaagatgca 8220 gagggaggca acacctggtc atctgtgaga ccttcatggg acctgaagac gcagcacaga 8280 ggaggaactt gaaaaaggac gggatttcta ctactcaagc atgtaggagc tcaggatatt 8340 ctgtaaatat gaagattttg agtttttgta ggtgaggtaa aaaaatacat aggtttttta 8400 cagaataaga catgtaaagc tctcttcatt ttctttgtat tttcatgaag ttattagatt 8460 cacaggccac cataatgcca ttgtctgtat atcttaattt caagatatta tttgagtaaa 8520 ttttgcttcc tttgtatcaa gatagaactt tgaaaaggta ggtaatttca cagttgatca 8580 aatattcttt gcccaaatta cttttggtta aaatttctcc taaatgtgct acagagtgca 8640 aactctgtct ccctgccatt ccgctatata cttactaact attattttat tcaagatcat 8700 gcatgctcta cttgaaggtc tatttctatc ttttcaatgc tacccttacc cactagccta 8760 atcacattat tcctattttc aacatctagg aatcaattac atagtgaaca tgcctaagaa 8820 ataataatct gggcagatgc agtggctcag gcccgtaatc ccagcccttt gagaggccga 8880 gcgggtggat cacttgaggt caggcgttgg tcaagtgctc ctagagaacc aggctgacca 8940 acatggagaa accttgtctc tactaataat acaaaaatta gccaggtgaa gtggcaggca 9000 cctataatcc cagctattcg ggaggctgag gaaggagaat tggttgaagc ccggaggtgg 9060 aggttgcagt gagccaatat tgcgccactg cattccagac ttggcaacag agtgacactc 9120 catctcaaca aaaagaaaga atgaaagaaa gaaagagcga gattatgtct caaaaaaaag 9180 gaaggaagga aggaaggaag gaaggaagga aggaaagaag gacaatctca aattctattt 9240 cattattttt cttccacgct cctagtccag cctagggtga atgtttcccc ctccaagaag 9300 gggcccttgc agcaccacaa cctgcttgtc tgccacgtga cggatttcta cccaggcagc 9360 attcaagtcc gatggttcct gaatggacag gaggaaacag ctggggtcgt gtccaccaac 9420 ctgatccgta atggagactg gaccttccag atcctggtga tgctggaaat gaccccccag 9480 cagggagatg tctacacctg ccaagtggag cacaccagcc tggatagtcc tgtcaccgtg 9540 gagtggagtg agtctctgat gaccctctag accccacctc tgaagagcag gggactctct 9600 ggctctgggg tccactcatc ttatcttctg catctatacc ctggggccat gtccaaaccc 9660 catctttctt ctataccagc tcctgagcat agtttgaagc cagggaaatg gagacttcct 9720 gaccttggct taggggttcc tgaagattca tagttctccc ccttgtcaga gaatctaggg 9780 acactgactg gtctcgaaac cctcacactt aggaactgac ctcacacata ggaacagttc 9840 tcttccttca gcattttagc ctcttctcag gcattttgag aggcaacttc cagaatcagc 9900 atttgccacc ttgttgaggt cacacccctg ttccagatat gagggtggct ctttctgaat 9960 ttcctcttag caagcttttt ccgctgcact gtcctcatcc cgatatgctg catcaggctc 10020 cagaatctca gacaggacat gagtagggat gcagctggtg gaggtgacac taaacctggg 10080 tctgtccttc ccagaggcac agtctgattc tgcccggagt aagacattga cgggagctgg 10140 gggcttcgtg ctggggctca tcatctgtgg agtgggcatc ttcatgcaca ggaggagcaa 10200 gaaaggtgag aaagcctgca gggtgagcgg gacttacctt cccctggcat attcacactt 10260 attccacgat gaggggtttg acagaaaaga aatgtcagaa agctctagag gccactgata 10320 tcagataatc ggggaacaaa catgacctat agcgagagag ggatcccagg ctgggatctt 10380 aatgcagcca gatgcatgag gtcccaagta ctcaggctcc tgcggagcgt ccattgagtg 10440 atgggcaatg gaatttggtg ggatggaaat gtttctctaa ttatctgagg tggtttcaat 10500 ggctgattat ataacctttc gtctttcatt tcagttcaac gaggatctgc ataaacaggt 10560 aatattcctg ctttgatttc cttgtggggt gggttgcagg aggatatgag tcctttctgt 10620 gcattgtaac actgaggctc ctccaggaag ggaatctcag gcatgaaccc ctctttcaat 10680 gtcagccttc aggcaagtgg ggaaagagca ttgcttggct ccattgctga aggaagcaga 10740 gatcaactct gttatttatc agcctgagac gcatcctctc accataattt ttctctcctg 10800 gacttacagg aaggaggctg gcaacctggg ataacttgtc ttttaccccc acagggttcc 10860 tgagctcact gaaaagacta ttgtgcctta ggaaaagcat ttgctgtgtt tcgttagcat 10920 ctggctccag gacagacctt caacttccaa attggatact gctgccaaga agttgctctg 10980 aagtcagttt ctatcattct gctctttgat tcaaagcact gtttctctca ctgggcctcc 11040 aaccatgttc ccttcttctt agcaccacaa ataatcaaaa cccaacatga ctgtttgttt 11100 tcctttaaaa atatgcacca aatcatctct catcactttt ctctgagggt tttagtagac 11160 agtaggagtt aataaagaag ttcattttgg tttaaacata ggaaagaaga gaaccatgaa 11220 aatggggata tgttaactat tgtataatgg ggcctgttac acatgacact cttctgaatt 11280 gactgtattt cagtgagctg cccccaaatc aagtttagtg ccctcatcca tttatgtctc 11340 agaccactat tcttaactat tcaatggtga gcagactgca aatctgcctg ataggaccca 11400 tattcccaca gcactaattc aacatatacc ttactgagag catgttttat cattaccatt 11460 aagaagttaa atgaacatca gaatttaaaa tcataaatat aatctaatac actttaa 11517 //