Dbfetch
ID LT599406; SV 1; linear; genomic DNA; STD; HUM; 3348 BP.
XX
AC LT599406;
XX
DT 14-JUL-2016 (Rel. 129, Created)
DT 19-JUL-2017 (Rel. 133, Last updated, Version 3)
XX
DE Homo sapiens, HLA-C gene for MHC class I antigen, cell line
DE DKMS-LSL-C-1341, allele HLA-C*03:new
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-3348
RA Albrecht V.;
RT ;
RL Submitted (07-JUN-2016) to the INSDC.
RL Research and Development, DKMS Life Science Lab, Fiedler Str. 43, Saxony,
RL 01307 Dresden, GERMANY.
XX
RN [2]
RX DOI; https://doi.org/10.1111/tan.13057.
RX PUBMED; 28547825.
RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A.,
RA Winkler S., Lange V., Bohme I., Schmidt A.H.;
RT "Dual redundant sequencing strategy: Full-length gene characterisation of
RT 1056 novel and confirmatory HLA alleles";
RL HLA. -:1-9(2017).
XX
DR MD5; 6d08652a9e5f75dd2ee6ec9b868d8880.
DR IMGT/HLA; HLA-C*03:263:02; HLA15923.
XX
FH Key Location/Qualifiers
FH
FT source 1..3348
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /cell_line="DKMS-LSL-C-1341"
FT /db_xref="taxon:9606"
FT exon 1..356
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=1
FT CDS join(284..356,487..756,1002..1277,1865..2140,2262..2381,
FT 2821..2853,2961..3008,3173..3177)
FT /codon_start=1
FT /transl_table=1
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /product="MHC class I antigen"
FT /function="antigen presenting molecule"
FT /db_xref="GOA:A0A1C3PHX6"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:A0A1C3PHX6"
FT /protein_id="SBW38627.1"
FT /translation="MRVMAPRTLILLLSGALALTETWAGSHSMRYFYTAVSRPGRGEPH
FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRN
FT LRGYYNQSEAGSHIIQRMYGCDVGPDGRLLRGYDQYAYDGKDYIALNEDLSSWTAADTA
FT AQITQRKWEAAREAEQLRAYLEGLCVEWLRRYLKNGKETLQRAEHPKTHVTHHPVSDHE
FT ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG
FT KGGSCSQAASSNSAQGSDESLIACKA"
FT intron 357..486
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=1
FT exon 487..756
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=2
FT intron 757..1001
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=2
FT exon 1002..1277
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=3
FT intron 1278..1864
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=3
FT exon 1865..2140
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=4
FT intron 2141..2261
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=4
FT exon 2262..2381
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=5
FT intron 2382..2820
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=5
FT exon 2821..2853
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=6
FT intron 2854..2960
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=6
FT exon 2961..3008
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=7
FT intron 3009..3172
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=7
FT exon 3173..3348
FT /gene="HLA-C"
FT /allele="HLA-C*03:new"
FT /number=8
XX
SQ Sequence 3348 BP; 624 A; 972 C; 1050 G; 702 T; 0 other;
aatcaggacg aagtcccagg tcccgggcgg ggctctcagg gtctcaggct ccaagggccg 60
tgtctgcact ggggaggcgc cgcgttgagg attctccact cccctgagtt tcacttcttc 120
tcccaacctg cgtcgggtcc ttcttcctga atactcatga cgcgtcccca attcccactc 180
ccattgggtg tcggattcta gagaagccaa tcagcgtctc cgcagtcccg gttctgaagt 240
ccccagtcac ccacccggac tcagattctc cccagacgcc gagatgcggg tcatggcgcc 300
ccgaaccctc atcctgctgc tctcgggagc cctggccctg accgagacct gggccggtga 360
gtgcggggtt gggagggaat cggcctctgc ggagaggagc gaggggcccg cccggcgagg 420
gcgcaggacc cggggagccg cgcagggagg agggtcgggc gggtctcagc ccctcctcgc 480
ccccaggctc ccactccatg aggtatttct acaccgctgt gtcccggccc ggccgcgggg 540
agccccactt catcgcagtg ggctacgtgg acgacacgca gttcgtgcgg ttcgacagcg 600
acgccgcgag tccgagaggg gagccgcggg cgccgtgggt ggagcaggag gggccggagt 660
attgggaccg ggagacacag aagtacaagc gccaggcaca gactgaccga gtgagcctgc 720
ggaacctgcg cggctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc 780
aggtcacgac ccctcctcat cccccacgga cggcccgggt cgccccaagt ctcccggtct 840
gagatccacc ccgaggctgc ggaacccgcc cagaccctcg accggagaga gccccagtca 900
cctttacccg gtttcatttt cagtttaggc caaaatcccc gcgggttggt cggggcgggg 960
cggggctcgg gggacggggc tgaccgcggg ggcggggcca gggtctcaca tcatccagag 1020
gatgtatggc tgcgacgtgg ggcccgacgg gcgcctcctc cgcgggtatg accagtacgc 1080
ctacgacggc aaggattaca tcgccctgaa cgaggacctg agctcctgga ccgccgcgga 1140
cacggcggct cagatcaccc agcgcaagtg ggaggcggcc cgtgaggcgg agcagctgag 1200
agcctacctg gagggcctgt gcgtggagtg gctccgcaga tacctgaaga atgggaagga 1260
gacgctgcag cgcgcgggta ccaggggcag tggggagcct tccccatctc ctgtagatct 1320
cccgggatgg cctcccacga ggaggggagg aaaatgggat cagcgctaga atatcgccct 1380
cccttgaatg gagaatggga tgagttttcc tgagtttcct ctgagggccc cctctgctct 1440
ctaggacaat taagggatga agtccttgag gaaatggagg ggaagacagt ccctagaata 1500
ctgatcaggg gtcccctttg accactttga ccactgcagc agctgtggtc aggctgctga 1560
cctttctctc aggccttgtt ctctgcctca cgctcaatgt gtttgaaggt ttgattccag 1620
cttttctgag tccttcggcc tccactcagg tcaggaccag aagtcgctgt tcctccctca 1680
gagactagaa ctttccaatg aataggagat tatcccaggt gcctgtgtcc aggctggcgt 1740
ctgggttctg tgcccccttc cccaccccag gtgtcctgtc cgttctcagg atggtcacat 1800
gggcgctgtt ggagtgtcgc aagagagata caaagtgtct gaattttctg actcttcccg 1860
tcagaacacc caaagacaca cgtgacccac catcccgtct ctgaccatga ggccaccctg 1920
aggtgctggg ccctgggctt ctaccctgcg gagatcacac tgacctggca gtgggatggg 1980
gaggaccaaa ctcaggacac tgagcttgtg gagaccaggc cagcaggaga tggaaccttc 2040
cagaagtggg cagctgtggt ggtgccttct ggagaagagc agagatacac gtgccatgtg 2100
cagcacgagg ggctgccgga gcccctcacc ctgagatggg gtaaggaggg ggatgagggg 2160
tgatgtgtct tctcagggaa agcagaagtc ctggagccct tcagccaggt cagggctgag 2220
gcttgggggt cagggcccct caccttcccc tcctttccca gagccgtctt cccagcccac 2280
catccccatc gtgggcatcg ttgctggcct ggctgtcctg gctgtcctag ctgtcctagg 2340
agctgtggtg gctgttgtga tgtgtaggag gaagagctca ggtagggaag gggtgaggag 2400
tggggtctgg gttttcttgt tccactggga gtttcaagcc ccaggtagaa gtgtgcccca 2460
cctcgttact ggaagcacca tccacacatg ggccatccca gcctgggacc ctgtgtgcca 2520
gcacttactc tgttgtgaag cacatgacaa tgaaggacag atgtatcacc ttgatgatta 2580
tggtgttggg gtccttgatt ccagcattca tgagtcaggg gaaggtccct gctaaggaca 2640
gaccttagga gggcagttgc tccagaaccc acagctgctt tccccgtgtt tcctgatcct 2700
gccctgggtc tgcagtcata gttctggaaa cttctcttgg gtccaagact aggaggttcc 2760
cctaagatcg catggccctg actcctccct gtcccctcac agggcatttt cttcccacag 2820
gtggaaaagg agggagctgc tctcaggctg cgtgtaagtg atggcggtgg gcgtgtggag 2880
gagctcaccc accccataat tcctcttgtc ccacatctcc tgcgggctct gaccaggtct 2940
ttttttttgt tctaccccag ccagcaacag tgcccagggc tctgatgagt ctctcatcgc 3000
ttgtaaaggt gagattctgg ggagctgaag tggtcggggg tggggcagag ggaaaaggcc 3060
taggtaatgg ggatcctttg attgggacgt ttcgaatgtg tggtgagctg ttcagagtgt 3120
gatcacttac catgactgac ctgaatttgt tcatgactat tgtgttctgt agcctgagac 3180
agctgcctgt gtgggactga gatgcaggat ttcttcacac ctctcctttg tgacttcaag 3240
agcctctggc atctctttct gcaaaggcat ctgaatgtgt ctgcgttcct gttagcataa 3300
tgtgaggagg tggagagaca gcccaccccc gtgtccaccg tgacccct 3348
//