Dbfetch
ID LT596621; SV 1; linear; genomic DNA; STD; HUM; 5154 BP. XX AC LT596621; XX DT 10-JAN-2018 (Rel. 135, Created) DT 10-JAN-2018 (Rel. 135, Last updated, Version 6) XX DE Homo sapiens HLA-DPB1 gene for MHC class II antigen, allele DE HLA-DPB1*350:01new, clone AN00173 XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5154 RA Marsh S.; RT ; RL Submitted (26-MAY-2016) to the INSDC. RL HLA Informatics Group, ANRI, Royal Free Hospital, London, NW3 2QG, UNITED RL KINGDOM. XX RN [2] RA Marsh S.G.E.; RT "Full-length genomic HLA sequences"; RL Unpublished. XX DR MD5; c11cb75336e2e2031d4fd7e80bffca83. XX FH Key Location/Qualifiers FH FT source 1..5154 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="AN00173" FT /db_xref="taxon:9606" FT CDS join(<20..264,4215..4496,5044..>5154) FT /codon_start=2 FT /transl_table=1 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*350:01new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:A0A2K4N805" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A2K4N805" FT /protein_id="SBV08725.1" FT /translation="RQECYAFNGTQRFLERYIYNREEFARFDSDVGEFRAVTELGRPAA FT EYWNSQKDILEEKRAVPDRMCRHNYELGGPMTLQRRVQPKVNVSPSKKGPLQHHNLLVC FT HVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYICQVE FT HTSLDSPVTVEWKAQSDSARSKTLTGAGGFMLGLIICGVGIFMHRRSKK" FT exon 20..264 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*350:01new" FT /number=1 FT intron 265..4214 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*350:01new" FT /number=1 FT exon 4215..4496 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*350:01new" FT /number=2 FT intron 4497..5043 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*350:01new" FT /number=2 FT exon 5044..5154 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*350:01new" FT /number=3 XX SQ Sequence 5154 BP; 1359 A; 1102 C; 1462 G; 1231 T; 0 other; agaattacct tttccaggga cggcaggaat gctacgcgtt taatgggaca cagcgcttcc 60 tggagagata catctacaac cgggaggagt tcgcgcgctt cgacagcgac gtgggggagt 120 tccgggcggt gacggagctg gggcggcctg ctgcggagta ctggaacagc cagaaggaca 180 tcctggagga gaagcgggca gtgccggaca ggatgtgcag acacaactac gagctgggcg 240 ggcccatgac cctgcagcgc cgaggtgagt gagggctttg ggccggcggt cccagggcag 300 ccccgcgggc ccgtgcccag ggcgcaggag cagccgggtt ggcctaaggg accttagtgc 360 cgggcggaaa ggggactttg ggttggggat tcatgggggg agcccatctg gagcttgtca 420 ggggagcgag cgcggggacc tggactgggc tgagcatgga gtgaggagga cgagagcaga 480 gagacccccg ggacttcatc aggcctggca gctgactgca tgtggggtga aaaaaggaag 540 ccacaggaca gcgcacaagg gtatggtgtg gagatggagg tggagatggc acagcaggcc 600 acacagagaa gaaacctaca gggaggtagc tgggtttgag gtgcttgagg ggcagatggg 660 tggtctgatg ggcaggtaga cagaagggtc tgcagccggg gaggagactg agatacatga 720 gaccatccag ggagagggga cccaggggga agagcaaagg accggatcct gggaactgga 780 cagttgtgat ttggccaaga cagaaaagcc tgtgaaagag accaaaaaaa cccaagtgca 840 gtgtgaggag aggcccgcag agaagagtct tggaagctga ggggaggtga cctcagcagc 900 acagtggaca gcggtgccag tgacttggga aggtcagaaa acagaagatg gaaagtgggt 960 ttggaaacca gggagacctg gggagagcag gttggccgca gcggcaggag ctggaatggg 1020 agggggtgca tgaggctgag tgtggcgcat cctcctcggg gctgagatgg attttacttg 1080 tcttgggttc cccacggctg tcacagggca gtgtctcagt tcattcgtct ttttccttca 1140 ggaagtctgg gtgtaaaggg atggagagag gtgaggtgtg tgcagtaaga ggatttctca 1200 aggatgggac aggaaggcct tggagctttg gcttcctcct gtgaacttgt ggggtgggga 1260 gcctggtgca ccaacctgag ggacttgagg gagtagtatc aggatgtggg attgagccct 1320 ggaccttttt tctagaaaga ggaaaaaaat gaagggagga ggaggaggaa gctggggaga 1380 tcacaccttt gattttcttg ttcctggaaa gtgaaaggaa gttcacctgc tatgagtgag 1440 aaggtggaca cactgggtgg ggatgaggtg agtgacatga gcttaggaaa gttgctgagg 1500 taattggttg agagaggtgt tcaaataaaa ataacgcaat tggcaaaaac tgttactaag 1560 actttgtaga ggcaccaatc agtgacatgg cagcattttc tttcacagta atcaactgcc 1620 agattgcaga cagccctgat gccagcctaa ggagtgtggg tttctcctcc aggcccgcag 1680 gtccccaacc tcactcctct gaagactctt ctggagatcc tctgtgatgc acagatctcc 1740 agactcagtg cccccagact cagattccct gggtggggag gtctggggat ctctgcttgt 1800 aatcagctcc ctagaggttc ccatgtagcc agataagtat tgtcagaaca ctgaagattt 1860 ttgaaaaatg aaaaagagaa ggttggagat gtgtcttcag aagactacta agggtgctgg 1920 ctagaggagg gaccagaggc agggagatga ggtaggaaac tgctattatt tgtcagggaa 1980 attgcaatca aggcatgagt tagaacaggg aaaacacaga ggcaagggag aggtggaagg 2040 gggaggaaag aagtagtgac aattccaggg tggatgtcca cccaaatcta gaagtaattg 2100 agcaaatgtt ttctgggcat tagagaaggc aactagaaca aacaggaatc cttgccttgg 2160 tgaaatgtat ttgaactggg tcagaaatga ggccattggg tatcaggcct taactccagc 2220 gcaccctgga ggtcactgat gtggctccag gctgacctgc tcctgtcaaa gaatattgag 2280 caagatgcct ctcgtggaat gttctgggac cttaaaacag atacccaagt attccccctg 2340 atttcatggt tcccagaagc tctatgggga agaaattgta ggtaattcac aactgagatt 2400 tagacataag ttgaatagtg taatggacat tgagttaacc gaggtaatga agtagtgaga 2460 cacaggtgcc cctgaaataa actcacattg agggaagagg ctgacaatgt ggatcagtct 2520 gaaaacaagg caaaaataca atagggagta agggttgtgt gtcagttcaa gactgtactt 2580 ttacctggcc cagcgccatg ttagggtatt tgtgttctcc aggaagtaga aaggaaagaa 2640 ctgagtgatt agggacctag aagactaatt tgagacattc ctcttgatga gctgttctct 2700 agggtagtcc tctgaaagag ctgttctcta gtggatctcc ctgaatgaac tgttctctag 2760 gagcacttga cccttttctg tgtttgtttt ttgttttgtg tttgtgtttg tttttgagac 2820 aggttctcgc tctgtctccc aggctggagt gctgtggcgc catcatgatt cactgcagcc 2880 tcaacctcct gggctcaagt gatcctcctg cctcagcctc ccatgtagct agaactacag 2940 atacatgtac caccatgtct ggctaattta tttttctttt tagagatggg ttctcactat 3000 gttgcccagg ctggtctcga aaccctgggc tcaagtgatc ctcacgcctc agcctcccaa 3060 agtgctaaga ttataggcat gaccaccatg cctggccttt tctgccttcc gagaaggaaa 3120 aaggtactgg tggcagagat ccaaaagaaa agttgccagt ggcagtgtgg aaattgacct 3180 gagaacaaca gaacaagctg gggcacaaat gcaaagatgc agagggaggc aacatctggt 3240 tatctgtgag accttcatgg gacctgaaga cacatccttt tggaaaagga tgggatttct 3300 actactcaag catgtagggg ctcaggatat tatgtaaata tgaagatttt gagtttttgt 3360 aagtgaggta aaaaaaatac ctaggttatt tacagaataa gacatgtcaa gctctcttca 3420 ttttctttgt attttcatga aataaaggta ttagattaac aggccaccat aatgccattg 3480 tctgtatatc ttaatttcaa gatattattt gagtaatttt tgcatccttt gtatcaagat 3540 agaactttga aaagacaggt aatttcacag ttgattaaat attctttgcc caaattactt 3600 ttggttaaaa tttctcctat atgtgctaca gagtgcaaac tctgtctccc tgccattccg 3660 ctatatactt actaattatt attttattca agatcatgca tgctctactt gaaggtctat 3720 cttttcagtg ctacccttac ccactagcct aatcacatta tatctatttt caacatctag 3780 gaatcaatta cgtagtgaac atgcctaaga aataataatc tgggcagatg cagtggctca 3840 ggcctgtaat cccagcactt tgagaggctg agcgggtgga tcacttgagg tcaggagttg 3900 gtcaagtgct cctagagaac cagcctgacc aacatggaga aaccttgtct ctactgataa 3960 tacaaaaatt agccaggtga ggtggcaggc acctataatc ccagctattc gggaggctga 4020 ggaaggagaa ttgcttgaac ccctgaggtg gaggttgcag tgagccaata ttgcgccact 4080 gcattccaga cttggcaaca gagcgacact ccacctcaac aaaaagaaag aaagagcgag 4140 attacgtctc aaaaaaggaa ggaaggaagg acaatctcaa atgctatttc attattttcc 4200 ttccccactc gtagtccagc ctaaggtgaa cgtttccccc tccaagaagg ggcccctgca 4260 gcaccacaac ctgcttgtct gccacgtgac agatttctac ccaggcagca ttcaagtccg 4320 atggttcctg aatggacagg aggaaacagc tggggtcgtg tccaccaacc tgatccgtaa 4380 tggagactgg accttccaga tcctggtgat gctggaaatg accccccagc agggagacgt 4440 ctacatctgc caagtggagc acaccagcct ggacagtcct gtcaccgtgg agtggagtga 4500 gtctctgatg accgtctaga ccccacctct gaagagcagg ggactctctg gctctggggt 4560 ccactcatct tatcttctgt atctataccc tggggccatg tccaaacccc atctttcttc 4620 tataccagct cctgagcata gtttgaagcc agggcaatgg agacttcctg accttggctt 4680 aggggttcct gaagattcat agttctcccc cttgtcagag aatctaggga cactggctga 4740 tctcgaaacc ctcacacaca ggaactgacc tcacacatag gaacagttct cttctttcag 4800 cattttagcc tcttctcagg cattttgaga ggcaacttct agaatcagca tttgccacct 4860 tgttgaggtc acacccctgt tccggacatg agggtggctc tttctgaatt tcctcttagc 4920 aagctttttc ccctgcactg tcttcatccc gatattctgc atcacgctcc agaatctcag 4980 acaggacatg agtagggatg cagctggtgg aggtgacact aaacctgggt ctgtccttcc 5040 cagaggcaca gtctgattct gcccggagta agacattgac gggagctggg ggcttcatgc 5100 tggggctcat catctgtgga gtgggcatct tcatgcacag gaggagcaag aaag 5154 //