Dbfetch
ID LS990945; SV 1; linear; genomic DNA; STD; HUM; 11464 BP. XX AC LS990945; XX PR Project:PRJEB27912; XX DT 30-JUL-2018 (Rel. 137, Created) DT 30-JUL-2018 (Rel. 137, Last updated, Version 1) XX DE Homo sapiens, DPB1 gene for MHC class II antigen, cell line DE DKMS-LSL-DPB1-2861, allele HLA-DPB1*14:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Albrecht V., Albrecht V.; RT ; RL Submitted (26-JUL-2018) to the INSDC. RL DKMS LIFE SCIENCE LAB, Quality & Service, Advanced Projects, Tatzberg 47 , RL Saxony, 01307 Dresden, Germany XX DR MD5; 2a3ea5ed1613feffe4f68f1518552190. XX FH Key Location/Qualifiers FH FT source 1..11464 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL-DPB1-2861" FT /db_xref="taxon:9606" FT exon 1..466 FT /gene="DPB1" FT /allele="HLA-DPB1*14:new" FT /number=1 FT CDS join(367..466,4999..5262,9213..9494,10042..10152, FT 10482..10501) FT /codon_start=1 FT /transl_table=1 FT /gene="DPB1" FT /allele="HLA-DPB1*14:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:Q5EP48" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:Q5EP48" FT /protein_id="SUQ66045.1" FT /translation="MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYVHQLRQECY FT AFNGTQRFLERYIYNREEFVRFDSDVGEFRAVTELGRPDEDYWNSQKDLLEEKRAVPDR FT VCRHNYELDEAVTLQRRVQPKVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQ FT EETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYICQVEHTSLDSPVTVEWKAQSDSA FT RSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRGSA" FT intron 467..4998 FT /gene="DPB1" FT /allele="HLA-DPB1*14:new" FT /number=1 FT exon 4999..5262 FT /gene="DPB1" FT /allele="HLA-DPB1*14:new" FT /number=2 FT intron 5263..9212 FT /gene="DPB1" FT /allele="HLA-DPB1*14:new" FT /number=2 FT exon 9213..9494 FT /gene="DPB1" FT /allele="HLA-DPB1*14:new" FT /number=3 FT intron 9495..10041 FT /gene="DPB1" FT /allele="HLA-DPB1*14:new" FT /number=3 FT exon 10042..10152 FT /gene="DPB1" FT /allele="HLA-DPB1*14:new" FT /number=4 FT intron 10153..10481 FT /gene="DPB1" FT /allele="HLA-DPB1*14:new" FT /number=4 FT exon 10482..11464 FT /gene="DPB1" FT /allele="HLA-DPB1*14:new" FT /number=5 XX SQ Sequence 11464 BP; 3103 A; 2544 C; 2968 G; 2849 T; 0 other; taatccctgt agatgggcca gcagaatatt tgagatcacc ttcagagcaa agaaaacgca 60 taatctcccc aaatatcatg acttatctga ctggttaaaa tgagtatcac tgtctttcct 120 ccgtcatctt aagtgcatca caggctttat attttcagac ctttcatact aactttctgc 180 ctagtgagca atgactcata caaagctcag tgtccattgg ttcttttctc agactctgtc 240 caatcccagg gtcacagaag actacttggg ttcatggtct ctaatatttc aaacaggagc 300 tccctttagc gagtccttct tttcctgact gcagctcttt tcattttgcc atccttttcc 360 agctccatga tggttctgca ggtttctgcg gccccccgga cagtggctct gacggcgtta 420 ctgatggtgc tgctcacatc tgtggtccag ggcagggcca ctccaggtaa gagccgagct 480 gccattcttg gagggtctgg ctcagggaac aattcctagg ggacgttatc tttaagggat 540 caaattctga gacaggctgc gggggctcct gccctaaggc agtgtcctct cttcccagct 600 agagaaagag gttcatcccc tataggatag cttgctaccc tactggccta ttctctctcc 660 aaggacatgg gtacagtaaa cagagagagg tgcccagtgg tcagtatgct tgtctttggg 720 gaaaatggga ccaagaggtc caggataacc ttggacagac aaggtttgca gagagagaag 780 ttggcaagtg caggctcctg ggcgtgttca catctgcatc cagcctggag gggactcagg 840 cagagagccc taagctggag tgtccaggct ctgaggatca ctgaggattc agtgctcacg 900 aagaatgcct cttattcccc agggtggagc aggagcccac accccttgga caattaagga 960 gagaagggag ggagggggat aggttttagc ccctgaaggc attctcatta aaggtacttc 1020 tcccagcctc cccagaactt ggttagggta ctagagtggg ttgcgacttg taggaagaat 1080 gagatgaggt tgtgtgggtg catgacaggg attgagtgta ggttatcaga cagccaagga 1140 agcagtaacc aagtgaaaaa tctcttcttc ctgctgcctc cctgtggctg gtgtaatatt 1200 atggcatcta tgatccattg tttttctctc aggatactct caggatattt ctttttatat 1260 atatatatac tttaagttct agggtacatg tgcacaacgt gcaggtttgt tacatatgta 1320 tacatgtgcc atgttggtgt gctgcaccca ttaactcgtc atttacatta ggtatatttc 1380 ctaatgctat ccctcccccc tccccccacc ccacaacagg ccccggtgta tgatgttccc 1440 cttcctgtgt ccatgtgttc tcattgttca gttcccacct atgagtgaga acatgtggtc 1500 tttggttttt tgtccttgca atagtttgct gtgaatgatg gtttccagct tcctccatgt 1560 ccctacaaag gacatgaact catccttttt tatggctgca cagtattcca tggtgtatat 1620 gtgtgcattt tcttaatcca gtctatcact gatggacagt tgggttggtt ccaagtcttt 1680 gctattgtga atagtgccgc aataaacata tgtgtgcatg tgtctttata gcagcatgat 1740 ttataatcct ttgggtatat acccagtaat gggatggctg ggtcaaatgg tatttctagt 1800 tctagatcct tgaggaattg ccacaatgtc ttgagatacc atctcacacc agttaaaatg 1860 gcgatcatta aaaagtcagg aaacaacagg tgctggagag gatgtggaga aataggaaca 1920 cttttactct gttggtggga ctgtaaacta gttcaaccat tgtactctca ggacatttct 1980 agtccaaatt tacaccaaca ctctgagagg aaggactgca aagtaggtac cttagttttc 2040 cactgacttc cacttttcct gcttacaccc ttcctcctag acctctccac acccctccta 2100 ggacacacct agaaggtact gacatcatgt cacctcctca tctttcaggg tagcaaggtt 2160 ggaatctcct gaatacagcc cctcaagccc taaaacctct tatctattac ctcgggttca 2220 tgtccaggaa ggggaggaga acttgaactt atagtcacag aagggtgctg agaactaacc 2280 agcaggacgg ctcagccctg ggaactgcag aggggtgagg ctggggagag aggaggctgg 2340 agcagcactg gtgacactga acagtgtcag gaggaggtga cggatgcggc atccccatcc 2400 cataggcaga gctgtcatgt gggatgaggg acagtgttgg gagtcaccga ggaaacccag 2460 aggtggggga gcagagagca gaagggggca tgtgatgctg ggcagtgaaa gggaggacag 2520 gcaaaggctg ggttgaggtt tgtaggggga atgagatgag gcagtggagc catgtgacag 2580 ggactgaggg tagattactg gagctccctg cgtagaatga atgttcaatc aaaacctgct 2640 ggagggagag ctggagccat aggggagtgg gtaaagtggg cagggctgat tccacaattc 2700 cctgcatgct cccccaactc cacacacatc cccaacctca aacagggcac aagaccaaag 2760 ggctgaggag ccaggctata gcttaaagag gctgggggag aaaagcttgg ctgagacaac 2820 ccatagggag ctagaggttt ttaatatatc ctattctgaa taagagacga attcattcag 2880 atcagtggtt tcaaaccgtg ctctgggcaa ctcaattgct aagggttcca caaacaggat 2940 aaagtttctt atatacaaaa aatgaaggtt tcaaattaca ccataaaacc cctcattgct 3000 tatgtctact tggcaggtaa aattccattt caaaagttaa atgtacttaa aaaattacct 3060 aagactgggt aaattaaaaa aattaaatgt tgcaaagaaa aaattcaaaa ttcttattct 3120 tgaatgaaaa acgttctctt actggtgatt gaggaggaga aacaaagact aacaaatgaa 3180 aatgggagaa tccacactca gagtggggca attgaacagg caggggcgga tggatggcag 3240 aggaggagga atctggactc aaggagctgg ggggccctgg gcctggaatt tcagggtctg 3300 gggcccaacg caccaggaga agaggcaggt caggatatct gagtcaagac ctgggatctt 3360 gccttagcaa tgacactgga gactaaaggt ggactccatg gtgcccttga gcccagccct 3420 accccatctc cactatcctc tgccaccagc tgtgcaactt ctgcaagggg tgaggttaat 3480 aaactggaga agttaatttg tggagcatga aacagatgag cagaacaatc acagcacctt 3540 aatttcccca gtgtgcccaa gaacagagca ggcctgaaga cactcaaaca gaaacaaaca 3600 tgtgccgtgt cactgataat tctgtgtaga cacacacctg ccagacactg ctcatggcac 3660 tccctaggaa gaacagcatg tgggaaaggc tgccaaaatt gttcatgtaa aaattacatc 3720 aatgctgtct tcctcggtgc tgcctatgca gctggcagcc atctcttcct ccacatcatg 3780 gcctccctca gactcctcat gaaggataag atcctcaaaa agaggaccaa caagttcatg 3840 aggcaccaat cagactgaaa tgtcaaaatt aagcataact ggcggaaacc cagaggtctt 3900 aacagtaggg ttcgtagaag gtccaagggc cagatcttga tgcccaacat tgcttatggg 3960 agcaacaaca acaacaaaaa acacatgctg cccagtggct tccagaagtt tctggcccac 4020 agcctcaagg agctgaaagt gctgctgatg tgcaacaaat cttactgtgc tgagatcgct 4080 cacaaaattt cctccagaac tgcaaagtca tcatggaaag agtcacccag ccggccatca 4140 gagtcaccaa ccccagtacc acggtgcaca gctaagaaaa tgagtagaaa gttcatgtcc 4200 acgttttgtg tgtaaataaa accataaaaa ctgccaaaaa aaattacatc aatgcctcta 4260 aacccaaagg actctacccc cacaggtccc tggttgttgt ggtgattttc attgtgtaaa 4320 atactttcca catcttttga caccaagtct ttctgcagcc atgtttgaaa attaactttc 4380 aggctacaga gtctttctta taccaaagtt gaagaaagtt ttaagaaata tatttctaca 4440 tctcctacat gcaaaacaac aggagcaagt tgaggaattc tcaagaaact ggtcgagaag 4500 agagagcgct tagctatgga aaagagaaag aaggaaggga gggcttcctg gaggaggtgg 4560 catttgaacc aggactgaca tcaggatgga aatgtcagtc agggagttaa gtagggggag 4620 cagctccgcc ctccacgtcc ccagctcctc ccgcccctgt tttttctccc agtgacccca 4680 cgtgaaacgt ctccgcctcc tccagccacc agcagaaggg actgccttcc cctcagtgct 4740 cgcccctccc tagtgatcac tcagtgcccc tgagctcatt cttttcagta aattctctct 4800 ctgcgtggtg agaaaacagg cctggagagg ctctgcgacc cgcttaggac cacagaactc 4860 ggtactagga aaactcctat tttaaaatcc agccctgggt gggaagattt gggaagaatc 4920 gttaatattg agagagagag ggagaaagag gattagatga gagtggcgcc tccgctcatg 4980 tccgccccct ccccgcagag aattacgtgc atcagttacg gcaggaatgc tacgcgttta 5040 atgggacaca gcgcttcctg gagagataca tctacaaccg ggaggagttc gtgcgcttcg 5100 acagcgacgt gggggagttc cgggcggtga cggagctggg gcggcctgat gaggactact 5160 ggaacagcca gaaggacctc ctggaggaga agcgggcagt gccggacagg gtatgcagac 5220 acaactacga gctggacgag gccgtgaccc tgcagcgccg aggtgagtga gggctttggg 5280 ccggcggtcc cagggcagcc ccgcgggccc gtgcccaggg cgcaggagca gccgggttgg 5340 cctaagggac cttagtgccg ggcggaaagg ggactttggg ttggggattc atggggggag 5400 cccatctgga gcttgtcagg ggagcgagcg cggggacctg gactgggctg agcatggagt 5460 gaggaggacg agagcagaga gacccccggg acttcatcag gcctggcagc tgactgcatg 5520 tggggtgaaa aaaggaagcc acaggacagc gcacaagggt atggtgtgga gatggaggtg 5580 gagatggcac agcaggccac acagagaaga aacctacagg gaggtagctg ggtttgaggt 5640 gcttgagggg cagatgggtg gtctgatggg caggtagaca gaagggtctg cagccgggga 5700 ggagactgag atacatgaga ccatccaggg agaggggacc cagggggaag agcaaaggac 5760 tggatcctgg gaactggaca gttgtgattt ggccaagaca gaaaagcctg tgaaagagac 5820 caaaaaaacc caagtgcagt gtgaggagag gcccgcagag aagagtcttg gaagctgagg 5880 ggaggtgacc tcagcagcac agtggacagc ggtgccagtg acttgggaag gtcagaaaac 5940 agaagatgga aagtgggttt ggaaaccagg gagacctggg gagagcaggt tggccgcagc 6000 ggcaggagct ggaatgggag ggggtgcatg aggctgagtg tggcgcatcc tcctcggggc 6060 tgagatggat tttacttgtc ttgggttccc cacggctgtc acagggcagt gtctcagttc 6120 attcgtcttt ttccttcagg aagtctgggt gtaaagggat ggagagaggt gaggtgtgtg 6180 cagtaagagg atttctcaag gatgggacag gaaggccttg gagctttggc ttcctcctgt 6240 gaacttgtgg ggtggggagc ctggtgcacc aacctgaggg acttgaggga gtagtatcag 6300 gatgtgggat tgagccctgg accttttttc tagaaagagg aaaaaaatga agggaggagg 6360 aggaggaagc tggggagatc acacctttga ttttcttgtt cctggaaagt gaaaggaagt 6420 tcacctgcta tgagtgagaa ggtggacaca ctgggtgggg atgaggtgag tgacatgagc 6480 ttaggaaagt tgctgaggta attggttgag agaggtgttc aaataaaagt aatgcaattg 6540 gcaaaaactg ttactaagac tttgtagagg cacaaatcag tgacacggca gcatcttctt 6600 tcacagtaat caactgccag attgcaggga gccttgatac cagcctaagg agtgtgagtt 6660 tctcctctag gcccacaggt ccccaacctc acttctccga agactctcct ggagatcatc 6720 tgtgatgcgc agatacccag actcactgcc ccgagactca gattccctgg gtagggaggt 6780 cgggggatct ctgcttgtaa tcagctccct agaggttccc atgtagccgg ataagtattg 6840 tcagaacact gaagattttt gaaaaatgaa aaagcgaagg ttggagatgt gtcttcagaa 6900 gactactaag ggtgctgggt agaggaggga ccagaggcag ggaaatgagg taggaaactg 6960 ctattatttg tcagggaaat tgcaatcaag aaatgagtta gaacagggaa aagacagagg 7020 caggggagag gtggaagggg gaggaaagga gtagtgacaa ttccagggtg tatgctcacc 7080 caaatctaga agtaattgag caaatgtttt ctgggcatta gagaaggcaa ctagaacaaa 7140 caggaatcct tgccttggtg aaatgtattt gaactgggtc agaaatgagg ccattgggta 7200 tcaagcctta actccagcgc cccctggagg tcgctgatgt ggctccaggc tgacctgctc 7260 ctgtcaaaga atattgagca agatgcctct catggaatgt tctgggacct taaaacagat 7320 acccaagtat tccccctgat ttcatggttc ccagaagctc tatggggaag aaattgtacg 7380 taattcacaa ctgagattta gacataagtt gaatagtgta atggacgttg agttaaccga 7440 ggtaatgaag tagtgagaca caggtgcccc tgaaataaac tcacattgag ggaagaggct 7500 gacaatgtgg atcagtctgt aaacaaggca aaaatacaat agggagtaag ggttgtgtgt 7560 cagttcaaga ctgtactttt acctggccca gcgccatgtt ggggtatttg tgttctccag 7620 gaagtagaaa ggaaagaact gagtgattag ggacctagaa gactaatttg agacattcct 7680 cttgatgaac tgttctctag ggtagtcctc tgaaagagct gttctctagt ggatctccct 7740 gaatgaactg ttctctagga gcacttgacc cttttctgtg tttgtttttt gttttgtgtt 7800 tgtgtttgtt tttgagacag gttctcgctc tgtctcccag gctggagtgc tgtggcgcca 7860 tcatgactca ctgcagcctc aacctcctgg gctcaagtga tcctcctgcc tcagcctccc 7920 atgtagctag aactacagat acatgtacca ccatgtctgg ctaatttatt tttcttttta 7980 gagatgggtt ctcactatgt tgcccaggct ggtctcgaaa ccctgggctc aagtgatcct 8040 cacgcctcag cctcccaaag tgctaagatt ataggcatga ccaccatgcc tggccttttc 8100 tgccttccga gaaggaaaaa ggtactggtg gcagagatcc aaaagaaaag ttgccagtgg 8160 cagtgtggaa attgacctga gaacaacaga acaagctggg gcacaaatgc aaagatgcag 8220 agggaggcaa catctggtta tctgtgagac cttcatggga cctgaagaca catccttttg 8280 gaaaaggatg ggatttctac tactcaagca tgtaggggct caggatatta tgtaaatatg 8340 aagattttga gtttttgtaa gtgaggtaaa aaaaatacct aggttattta cagaataaga 8400 catgtcaagc tctcttcatt ttctttgtat tttcatgaaa taaaggtatt agattaacag 8460 gccaccataa tgccattgtc tgtatatctt aatttcaaga tattatttga gtaatttttg 8520 catcctttgt atcaagatag aactttgaaa agacaggtaa tttcacagtt gattaaatat 8580 tctttgccca aattactttt ggttaaaatt tctcctatat gtgctacaga gtgcaaactc 8640 tgtctccctg ccattccgct atatacttac taattattat tttattcaag atcatgcatg 8700 ctctacttga aggtctatct tttcagtgct acccttaccc actagcctaa tcacattata 8760 tctattttca acatctagga atcaattacg tagtgaacat gcctaagaaa taataatctg 8820 ggcagatgca gtggctcagg cctgtaatcc cagcactttg agaggctgag cgggtggatc 8880 acttgaggtc aggagttggt caagtgctcc tagagaacca gcctgaccaa catggagaaa 8940 ccttgtctct actgataata caaaaattag ccaggtgagg tggcaggcac ctataatccc 9000 agctattcgg gaggctgagg aaggagaatt gcttgaaccc ctgaggtgga ggttgcagtg 9060 agccaatatt gcgccactgc attccagact tggcaacaga gcgacactcc acctcaacaa 9120 aaagaaagaa agagcgagat tacgtctcaa aaaaggaagg aaggaaggac aatctcaaat 9180 gctatttcat tattttcctt ccccactcgt agtccagcct aaggtgaacg tttccccctc 9240 caagaagggg cccctgcagc accacaacct gcttgtctgc cacgtgacag atttctaccc 9300 aggcagcatt caagtccgat ggttcctgaa tggacaggag gaaacagctg gggtcgtgtc 9360 caccaacctg atccgtaatg gagactggac cttccagatc ctggtgatgc tggaaatgac 9420 cccccagcag ggagacgtct acatctgcca agtggagcac accagcctgg acagtcctgt 9480 caccgtggag tggagtgagt ctctgatgac cgtctagacc ccacctctga agagcagggg 9540 actctctggc tctggggtcc actcatctta tcttctgcat ctataccctg gggccatgtc 9600 caaaccccat ctttcttcta taccagctcc tgagcatagt ttgaagccag ggcaatggag 9660 acttcctgac cttggcttag gggttcctga agattcatag ttctccccct tgtcagagaa 9720 tctagggaca ctggctgatc tcgaaaccct cacacacagg aactgacctc acacatagga 9780 acagttctct tctttcagca ttttagcctc ttctcaggca ttttgagagg caacttctag 9840 aatcagcatt tgccaccttg ttgaggtcac acccctgttc cggacatgag ggtggctctt 9900 tctgaatttc ctcttagcaa gctttttccc ctgcactgtc ttcatcccga tattctgcat 9960 cacgctccag aatctcagac aggacatgag tagggatgca gctggtggag gtgacactaa 10020 acctgggtct gtccttccca gaggcacagt ctgattctgc ccggagtaag acattgacgg 10080 gagctggggg cttcgtgctg gggctcatca tctgtggagt gggcatcttc atgcacagga 10140 ggagcaagaa aggtgagaaa gcctgcaagg tgagcgggac ttaccttccc ctggcatatt 10200 cacacttact ccatgatgag ggttcagaca gaaaagaaat gtcagaaagc tctagagacc 10260 actgaaatca gatagtcggg gaacaaacat gacctatggc gagaggggga tcccaggctg 10320 ggatcttaat gcagccagat gcatgaggtc ccaggtgctc agactcctgc ggggcatcca 10380 ttgagtggtg gtcaatggaa tttggtggga tggaaatgtt tctctaacta tctgaggtgg 10440 tttcaatggc tgaatacata acctttcctc tttcatttca gttcaacgag gatctgcata 10500 aacaggtaat attcctgctt tgatttcctt ggggggtggg ttacaggagg atatgactct 10560 tttctgtgca ttgtaatact gaggctcctc caggaaggga atctcaggca tgaacccctc 10620 tttcaacctc ggctctcggg tgagtgggga aaaagcattg cacggctcca ttgctgaagg 10680 aagcagagat cagttctgtt ctttatcagc ctaagatgca gcctctcacc ataatttttc 10740 tctcctggac ttaaaggaag gaggccagca acctgggata acttgtcctt tacccccaca 10800 gggttcctga cctcaccgaa aagactaatg tgccttagaa caagcatttg ctgtgttttg 10860 ttagcacctg gttccaggac agaccctcag cttcccaaga ggatactgct gccaagaagt 10920 tgctctgaag tcagtttcta tcgttctgct ctttgattca aagcactgtt tctctcactg 10980 ggcctccaac catgttccct tcttcttagc accacaaata atcaaaaccc aacataagtg 11040 tttgttttcc tttaaaaata tgcatcaaat cgtctctcat tacttttctc tgagggtttt 11100 agtaaacagt aggagttaat aaagaagttc attttggttt acacgtagga aagaagagaa 11160 gcatgaaagt ggagatatgt taactattgt ataatgtggc ctgttataca tgacactctt 11220 ctgaattgac tgtatttcag tgagctgccc ccaaatcaag tttagtgccc tcatccattt 11280 atgtctcaga ccgctattct taactattca atggtgagca gactgcaaat ctgcctgata 11340 ggacccgtat tcccacagca ctaattcaac atatatctta ctgagagcat gttttatcat 11400 taccattaag aagttaaatg aacatcagaa tttaaaatca taaatataat ctaatacact 11460 ttaa 11464 //