Dbfetch
ID LS480673; SV 1; linear; genomic DNA; STD; HUM; 11464 BP. XX AC LS480673; XX PR Project:PRJEB27148; XX DT 21-JUN-2018 (Rel. 137, Created) DT 21-JUN-2018 (Rel. 137, Last updated, Version 1) XX DE Homo sapiens, HLA-DPB1 gene for MHC class II antigen, cell line DE DKMS-LSL-DPB1-1640, allele HLA-DPB1*131:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Albrecht V., Albrecht V.; RT ; RL Submitted (05-JUN-2018) to the INSDC. RL DKMS LIFE SCIENCE LAB, Quality & Service, Advanced Projects, Tatzberg 47 , RL Saxony, 01307 Dresden, Germany XX DR MD5; 5638fed82694ba75547bbcbd67255f88. XX FH Key Location/Qualifiers FH FT source 1..11464 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL-DPB1-1640" FT /db_xref="taxon:9606" FT exon 1..466 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*131:new" FT /number=1 FT CDS join(367..466,5001..5264,9213..9494,10042..10152, FT 10482..10501) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*131:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:L8B8W7" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:L8B8W7" FT /protein_id="SPT23809.1" FT /translation="MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYVHQLRQECY FT AFNGTQRFLERYIYNREEFVRFDSDVGEFRAVTELGRPDEDYWNSQKDILEEERAVPDR FT MCRHNYELDEAVTLQRRVQPKVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQ FT EETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYICQVEHTSLDSPVTVEWKAQSDSA FT QSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRGSA" FT intron 467..5000 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*131:new" FT /number=1 FT exon 5001..5264 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*131:new" FT /number=2 FT intron 5265..9212 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*131:new" FT /number=2 FT exon 9213..9494 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*131:new" FT /number=3 FT intron 9495..10041 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*131:new" FT /number=3 FT exon 10042..10152 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*131:new" FT /number=4 FT intron 10153..10481 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*131:new" FT /number=4 FT exon 10482..11464 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*131:new" FT /number=5 XX SQ Sequence 11464 BP; 3106 A; 2543 C; 2967 G; 2848 T; 0 other; taatccctgt agatgggcca gcagaatatt tgagatcacc ttcagagcaa agaaaacgca 60 taatctcccc aaacatcatg acttatctga ctggttaaaa tgagtatcac tgtctttcct 120 ccgtcatctt aagtgcatca caggctttat attttcagac ctttcatact aactttctgc 180 ctagtgagca atgactcata caaagctcag tgtccattgg ttcttttctc agactctgtc 240 caatcccagg gtcacagaag actacttggg ttcatggtct ctaatatttc aaacaggagc 300 tccctttagc gagtccttct tttcctgact gcagctcttt tcattttgcc atccttttcc 360 agctccatga tggttctgca ggtttctgcg gccccccgga cagtggctct gacggcgtta 420 ctgatggtgc tgctcacatc tgtggtccag ggcagggcca ctccaggtaa gagccgagct 480 gccattcttg gagggtctgg ctcagggaac aattcctagg ggacgttatc tttaagggat 540 caaattctga gacaggctgc gggggctcct gccctaaggc agtgtcctct cttcccagct 600 agagaaagag gttcatcccc tataggatag cttgctaccc tactggccta ttctctctcc 660 aaggacatgg gtacagtaaa cagagagagg tgcccagtgg tcagtatgct tgtctttggg 720 aaaatgggac caagaggtcc aggataacct tggacagaca aggtttgcag agagagaagt 780 tggcaagtgc aggctcctgg gcgtgttcac atctgcatcc agcctggagg ggactcaggc 840 agagagccct aagctggagt gtccaggctc tgaggatcac tgaggattca gtgctcacga 900 agaatgcctc ttattcccca gggtggagca ggagcccaca ccccttggac aattaaggag 960 agaagggagg gagggggata ggttttagcc cctgaaggca ttctcattaa aggtacttct 1020 cccagcctcc ccagaacttg gttagggtac tagagtgggt tgcgacttgt aggaagaatg 1080 agatgaggtt gtgtgggtgc atgacaggga ttgagtgtag gttatcagac agccaaggaa 1140 gcagtaacca agtgaaaaat ctcttcttcc tgctgcctcc ctgtggctgg tgtaatatta 1200 tggcatctat gatccattgt ttttctctca ggatactctc aggatatttc tttttatata 1260 tatatatact ttaagttcta gggtacatgt gcacaacgtg caggtttgtt acatatgtat 1320 acatgtgcca tgttggtgtg ctgcacccat taactcgtca tttacattag gtatatttcc 1380 taatgctatc cctcccccct ccccccaccc cacaacaggc cccggtgtat gatgttcccc 1440 ttcctgtgtc catgtgttct cattgttcag ttcccaccta tgagtgagaa catgtggtct 1500 ttggtttttt gtccttgcaa tagtttgctg tgaatgatgg tttccagctt cctccatgtc 1560 cctacaaagg acatgaactc atcctttttt atggctgcac agtattccat ggtgtatatg 1620 tgtgcatttt cttaatccag tctatcactg atggacagtt gggttggttc caagtctttg 1680 ctattgtgaa tagtgccgct ataaacatat gtgtgcatgt gtctttatag cagcatgatt 1740 tataatcctt tgggtatata cccagtaatg ggatggctgg gtcaaatggt atttctagtt 1800 ctagatcctt gaggaattgc cacactgtct tgagatacca tctcacacca gttaaaatgg 1860 cgatcattaa aaagtcagga aacaacaggt gctggagagg atgtggagaa ataggaacac 1920 ttttactctg ttggtgggac tgtaaactag ttcaaccatt gtactctcag gacatttcta 1980 gtccaaattt acaccaacac tctgagagga aggactgcaa agtaggtacc ttagttttcc 2040 actgacttcc acttttcctg cttacaccct tcctcctaga cctctccaca cccctcctag 2100 gacacaccta aaaggtactg acatcatgtc acctcctcat ctttcagggt agcaaggttg 2160 gaatctcctg aatacagccc ctcaagccct aaaacctctt atctattacc ttgggttcat 2220 tgtccaggaa ggggaggaga acttgaactt gtagtcacag aagggtgctg agaactaacc 2280 agcaggacgg ctcagccctg ggaactgcag aggggtgagg ctggggagag aggaggctgg 2340 agcagcactg gtgacactga acagtgtcag gaggaagtga cggatgcagc gcccccatcc 2400 cataggcaga gctgtcatgt gggatgaggg acagtgttgg gagccaccaa ggaaacccag 2460 aggtggggga gcagagagca gaagggggca tgtgatgctg ggcagtgaaa gggaggacag 2520 gcaaaggctg ggttgaggtt tgtaggggga atgagatgag gcagtggagc catgtgacag 2580 ggactgaggg tagattactg gagctccctg cgtagaatga atgttcaatc aaaacctgct 2640 ggagggagag ctggagccat aggggagtgg gtaaagtggg cagggttgat tccacaattc 2700 cctgcatgct cccccaactc cacacacatc cccaacctca aacagggcac aagaccaaag 2760 ggctgaggag ccaggctata gcttaaagag gctgggggag aaaagcttgg ctgagacaac 2820 ccatagggag ctagaggttt ttaatatatc ctattctgaa taagagacga attcattcag 2880 atcagtggtt tcaaaccgtg ctctgggcaa ctcaattgct aagggttcca caaacaggat 2940 aaagtttctt atatacaaaa aaaatgaagg tttcaaatta caccataaaa cccctcattg 3000 cttatgtcta cttggcaggt aaaattccat ttcaaaagtt aaatgtactt aaaaaattac 3060 ctaagactgg gtaaattaaa aaaattaaat gttgcaaaga aaaaattcaa aattcttatt 3120 cttgaatgaa aaacgttctc ttactggtga ttgaggagga gaaacaaaga ctaacaaatg 3180 aaaatgggag aatccacact cagagtgggg caattgaaca ggcaggggcg gatggatggc 3240 agaggaggag gaatctggac tcaaggagct ggggggctct gggcctggaa tttcagggtc 3300 tggggcccaa ggcaccagga gaagaggcag gtcaggatat ctgagtcaag acctgggatc 3360 ttgccttagc aatgacactg gagactaaag gtggactcca tggtgccctt gagcccagcc 3420 ctaccccatc tccactatcc tctgccacca gctgtgcaac ttctgctagg ggtgaggtta 3480 ataaactgga gaagttaatt tgtggagcat gaaacagatg agcagaacaa tcacagcacc 3540 ttaatttccc cagtgtgccc aagaacagag caggcctgaa gacactcaaa cagaaacaaa 3600 catgtgccgt gtcactgata attctgtgta gacacacacc tgccagacac tgctcatggc 3660 actccctagg aagaacagca tgtgggaaag gctgccaaaa ttgttcatgt aaaaattaca 3720 tcaatgctgt cttcctcggt gctgcctatg cagctggcag ccatctcttc ctccacatca 3780 tggcctccct cagactcctc atgaaggata agatcctcaa aaagaggacc aacaagttca 3840 tgaggcacca atcagactga aatgtcaaaa ttaagcataa ctggcggaaa cccagaggtc 3900 ttaacagtag ggttcgtaga aggtccaagg gccagatctt gatgcccaac attgcttatg 3960 ggagcaacaa caacaacaaa aaacacatgc tgcccagtgg cttccagaag tttctggccc 4020 acagcctcaa ggagctgaaa gtgctgctga tgtgcaacaa atcttactgt gctgagatcg 4080 ctcacaaaat ttcctccaga actgcaaagt catcatggaa agagtcaccc agccggccat 4140 cagagtcacc aaccccagta ccagggtgca cagctaagaa aatgagtaga aagttcatgt 4200 ccacgttttg tgtgtaaata aaaccataaa aactgccaaa aaaaattaca tgaatgcctc 4260 taaacccaaa ggactctacc cccacaggtc cctggttgtt gtggtgattt tcattgtgta 4320 aaatactttc cacatctttt gacaccaagt ctttctgcag ccatgtttga aaattaactt 4380 tcaggctaca gagtctttct tataccaaag ttgaagaaag ttttaagaaa tatatttcta 4440 catctcctac atgcaaaaca acaggagcaa gttgaggaat tctcaagaaa ctggtcgaga 4500 agagagagcg cttagctatg gaaaagagaa agaaggaagg gagggcttcc tggaggaggt 4560 ggcatttgaa ccaggactga catcaggatg gaaatgtcag tcagggagtt aagtaggggg 4620 agcagctccg ccctccacgt ccccagctcc tcccgcccct gttttttctc ccagtgaccc 4680 cacgtgaaac gtctccgcct cctccagcca ccagcagaag ggactgcctt cccctcagtg 4740 ctcgcccctc cctagtgatc actcagtgcc cctgagctca ttcttttcag taaattctct 4800 ctctgcgtgg tgagaaaaca ggcctggaga ggctctgcga cccgcttagg accacagaac 4860 tcggtactag gaaaactcct attttaaaat ccagccctga gtgggaagat ttgggaagaa 4920 tccttaatat tgagagagag agggagaaag aggattagat gagagtggcg cctccgctca 4980 tgtccgcccc ctccccgcag agaattacgt gcaccagtta cggcaggaat gctacgcgtt 5040 taatgggaca cagcgcttcc tggagagata catctacaac cgggaggagt tcgtgcgctt 5100 cgacagcgac gtgggggagt tccgggcggt gacggagctg gggcggcctg atgaggacta 5160 ctggaacagc cagaaggaca tcctggagga ggagcgggca gtgccggaca ggatgtgcag 5220 acacaactac gagctggacg aggccgtgac cctgcagcgc cgaggtgagt gagggctttg 5280 ggccggcggt cccagggcag ccccgcgggc ccgtgcccag ggcgcaggag cagccgggtt 5340 ggcctaaggg accttagtgc cgggcggaaa ggggactttg ggttggggat tcatgggggg 5400 agcccatctg gagcttgtca ggggagcgag cgcggggacc tggactgggc tgagcatgga 5460 gtgaggagga cgggagcaga gagacccccg ggacttcatc aggcctggca gctgactgca 5520 tgtggggtga gaaaaggagg ccacaggaca gcgcgcaagg gtgtggcgtg gagatggagg 5580 tggagatggc acagcaggcc acacagagaa gaaacctaca gggaggtagc tgggtttgag 5640 gtgcttgagg ggcagatggg tggtctgatg ggcaagtaga caaaagggtc tgcagccggg 5700 gaggagactg agatacatga gaccatccag ggagagggga cccaggggga agggcaaagg 5760 actggatcct gggaactgga cagttgtgat ttggccaaga cagaaaagcc tgtgaaagag 5820 accaaaaaaa cccaagtgcg gtgtgaggag aggcccgcag agaagagtct tggaagctga 5880 ggggaggtga cctcagcagc acagtggaca gcggtgccag tgacttggga aggtcagaaa 5940 acagaagatg gaaagtgggt ttggaaacca gggagacctg gggagagcag gttggccgca 6000 gcggcaggag ctggaatggg agggggtgca tgaggctgag tgtggcgcat cctcctcggg 6060 gctgagatgg attttacttg tcttgggttc cccatggctg gcacagggca gtgtctgagc 6120 tcatttgtct tttccttcag gaagtcgggg tgtaaaggga cggagagagg tgaggtgtgt 6180 gcagtaagag gatttctcaa ggatgggaca ggagggcctt ggagctttgg cttcctcctg 6240 tgaatttgtg gggtggggag cctggtgcac caacctgagg gacctgaggg agtagtatca 6300 ggatgtggga ttgagccctg gacctttttt ctagaaagag gaaaaaatga agggaggagg 6360 aggaggaagc tggggagatc acacctttga ttttcttgtt cctggaaagt gaaaggaagt 6420 tcacctgcta tgagtgagaa ggtggacaca ctgggtgggg atgaggtgag tgacatgagc 6480 ttaggaaagt tgctgaggta attggttgag agaggtgttc aaataaaagt aatgcaattg 6540 gcaaaaactg ttactaagac tttgtagagg cacaaatcag tgacatggca gcatcttctt 6600 tcacagtaat caactgccag attgcaggga gccctgatac cagcctaagg agtgtgagtt 6660 tctcctctag gcccacaggt ccccaacctc actcctccga agactctcct ggagatcatc 6720 tgtgatgtgc agatacccag actcactgcc ccgagactca gattccctgg gtagggaggt 6780 cgggggatct ctgcttgtaa tcagctccct agaggttccc atgtagccgg ataagtattg 6840 tcagaacact gaagattttt gaaaaatgaa aaagagaagg ttggagatgt gtcttcagaa 6900 gactactaag ggtgctgggt agaggaggga ccagaggcag ggagatgagg taggaaactg 6960 ctattatttg tcagggaaat tgcaatcaag aaatgagtta gaacagggaa aacacagagg 7020 caggggagag gtggaagggg gaggaaagga gtagtgacaa ttccagggtg tatgctcacc 7080 caaatctaga agtaattgag caaatgtttt ctgggcatta gagaaggcaa ctagaacaaa 7140 caggaatcct tgccttggtg aaatgtattt gaactgggtc agaaatgagg ccattgggta 7200 tcaagcctta actccagcgc cccctggagg tcgctgatgt ggctccaggc tgacctgctc 7260 ctgtcaaaga atattgagca agatgcctct catggaatgt tctgggacct taaaacagat 7320 acccaagtat tccccctgat ttcatggttc ccagaagctc tatggggaag aaattgtacg 7380 taattcacaa ctgagattta gacataagtt gaatagtgta atggacgttg agttaaccga 7440 ggtaatgaag tagtgagaca caggtgcccc tgaaataaac tcacattgag ggaagaggct 7500 gacaatgtgg atcagtctgt aaacaaggca aaaatacaat agggagtaag ggttgtgtgt 7560 cagttcaaga ctgtactttt acctggccca gcgccatgtt ggggtatttg tgttctccag 7620 gaagtagaaa ggaaagaact gagtgattag ggacctagaa gactaatttg agacattcct 7680 cttgatgaac tgttctctag ggtagtcctc tgaaagagct gttctctagt ggatctccct 7740 gaatgaactg ttctctagga gcacttgacc cttttctgtg tttgtttttt gttttgtgtt 7800 tgtgtttgtt tttgagacag gttctcgctc tgtctcccag gctggagtgc tgtggcgcca 7860 tcatgactca ctgcagcctc aacctcctgg gctcaagtga tcctcctgcc tcagcctccc 7920 atgtagctag aactacagat acatgtacca ccatgtctgg ctaatttatt tttcttttta 7980 gagatgggtt ctcactatgt tgcccaggct ggtctcgaaa ccctgggctc aagtgatcct 8040 cacgcctcag cctcccaaag tgctaagatt ataggcatga ccaccatgcc tggccttttc 8100 tgccttccga gaaggaaaaa ggtactggtg gcagagatcc aaaagaaaag ttgccagtgg 8160 cagtgtggaa attgacctga gaacaacaga acaagctggg gcacaaatgc aaagatgcag 8220 agggaggcaa catctggtta tctgtgagac cttcatggga cctgaagaca catccttttg 8280 gaaaaggatg ggatttctac tactcaagca tgtaggggct caggatatta tgtaaatatg 8340 aagattttga gtttttgtaa gtgaggtaaa aaaaatacct aggttattta cagaataaga 8400 catgtcaagc tctcttcatt ttctttgtat tttcatgaaa taaaggtatt agattaacag 8460 gccaccataa tgccattgtc tgtatatctt aatttcaaga tattatttga gtaatttttg 8520 catcctttgt atcaagatag aactttgaaa agacaggtaa tttcacagtt gattaaatat 8580 tctttgccca aattactttt ggttaaaatt tctcctatat gtgctacaga gtgcaaactc 8640 tgtctccctg ccattccgct atatacttac taattattat tttattcaag atcatgcatg 8700 ctctacttga aggtctatct tttcagtgct acccttaccc actagcctaa tcacattata 8760 tctattttca acatctagga atcaattacg tagtgaacat gcctaagaaa taataatctg 8820 ggcagatgca gtggctcagg cctgtaatcc cagcactttg agaggctgag cgggtggatc 8880 acttgaggtc aggagttggt caagtgctcc tagagaacca gcctgaccaa catggagaaa 8940 ccttgtctct actgataata caaaaattag ccaggtgagg tggcaggcac ctataatccc 9000 agctattcgg gaggctgagg aaggagaatt gcttgaaccc ctgaggtgga ggttgcagtg 9060 agccaatatt gcaccactgc attccagact tggcaacaga gcgacactcc acctcaacaa 9120 aaagaaagaa agagcgagat tacgtctcaa aaaaggaagg aaggaaggac aatctcaaat 9180 gctatttcat tatttttctt ccccactcgt agtccagcct aaggtgaacg tttccccctc 9240 caagaagggg cccctgcagc accacaacct gcttgtctgc cacgtgacag atttctaccc 9300 aggcagcatt caagtccgat ggttcctgaa tggacaggag gaaacagctg gggtcgtgtc 9360 caccaacctg atccgtaatg gagactggac cttccagatc ctggtgatgc tggaaatgac 9420 cccccagcag ggagacgtct acatctgcca agtggagcac accagcctgg acagtcctgt 9480 caccgtggag tggagtgagt ctctgatgac catctagacc ccacctctga agagcagggg 9540 actctctggc tctggggtcc actcatctta tcttctgcat ctataccctg gggccatgtc 9600 caaaccccat ctttcttcta taccagctcc tgagcatagt ttgaagccag ggcaatggag 9660 acttcctgac cttggcttag gggttcctga agattcatag ttctccccct tgtcagagaa 9720 tctagggaca ctggctgatc tcgaaaccct cacacacagg aactgacctc acacatagga 9780 acagttctct tctttcagca ttttagcctc ttctcaggca ttttgagagg caacttccag 9840 aatcagcatt tgccaccttg ttgaggtcac acccctgttc cagacatgag ggtggctctt 9900 tctgaatttc ctcttagcaa gctttttctc ctgcactgtc ttcatcccga tattctgcat 9960 cacgctccag aatctcagac aggacatgag tagggatgca gctggtggag gtgacactaa 10020 acctgggtct gtccttccca gaggcacagt ctgattctgc ccagagtaag acattgacgg 10080 gagctggggg cttcgtgctg gggctcatca tctgtggagt gggcatcttc atgcacagga 10140 ggagcaagaa aggtgagaaa gcctgcaagg tgagcgggac ttaccttccc ctggcatatt 10200 cacacttact ccatgatgag ggtttagaca gaaaagaaat gtcagaaagc tctagagacc 10260 actgaaatca gatagtcggg gaacaaacat gacctatagc gagagtggga tcccaggctg 10320 ggatcttaat gcagccagat gcatgaggtc ccaggtgctc agactcctgc ggggcatcca 10380 ttgagtggtg gtcaatggaa tttggtggga tggaaatgtt tctctaatta tctgaggtgg 10440 tttcaatggc tgaatacata acctttcctc tttcatttca gttcaacgag gatctgcata 10500 aacaggtaat attcctgctt tgatttcctt ggggggtggg ttacaggagg atatgactcc 10560 tttctgtgca ttgtaatact gaggctcctc caggaaggga atctcaggca tgaacccctc 10620 tttcaacctc agctctcggg tgagtgggga aaaagcattg cacggctcca ttgctgaagg 10680 aagcagagat cagttctgtt ctttatcagc ctaagatgca gcctctcacc acaatttttc 10740 tctcctggac ttaaaggaag gaggccagca acctgggata acttgtcctt tacccccaca 10800 gggttcctga cctcaccgaa aagactaatg tgccttagaa caagcatttg ctgtgttttg 10860 ttaacacctg gttccaggac agaccctcag cttcccaaga ggatactgct gccaagaagt 10920 tgctctgaag tcagtttcta tcgttctgct ctttgattca aagcactgtt tctctcactg 10980 ggcctccaac catgttccct tcttcttagc accacaaata atcaaaaccc aacataagtg 11040 tttgctttcc tttaaaaata tgcatcaaat cgtctctcat tacttttctc tgagggtttt 11100 agtaaacagt aggagttaat aaagaagttc attttggttt acacgtagga aagaagagaa 11160 gcatgaaagt ggagatatgt taactattgt ataatgtggc ctgttataca tgacactctt 11220 ctgaattgac tgtatttcag tgagctgccc ccaaatcaag tttagtgccc tcatccattt 11280 atgtctcaga ccgctattct taactattca atggtgagca gactgcaaat ctgcctgata 11340 ggacccatat tcccacagca ctaattcaac atatatctta ctgagagcat gttttatcat 11400 taccattaag aagttaaatg aacatcagaa tttaaaatca taaatataat ctaatacact 11460 ttaa 11464 //