Dbfetch
ID LS398679; SV 1; linear; genomic DNA; STD; HUM; 3903 BP. XX AC LS398679; XX PR Project:PRJEB26632; XX DT 12-MAY-2018 (Rel. 136, Created) DT 12-MAY-2018 (Rel. 136, Last updated, Version 1) XX DE Homo sapiens, HLA-C gene for MHC class I antigen, cell line DE DKMS-LSL-C-2596, allele HLA-C*05:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Albrecht V., Albrecht V.; RT ; RL Submitted (09-MAY-2018) to the INSDC. RL DKMS LIFE SCIENCE LAB, Quality & Service, Advanced Projects, Tatzberg 47 , RL Saxony, 01307 Dresden, Germany XX DR MD5; 8f1c6172a70e0fdb849c87892f34b1ed. DR Ensembl-Gn; ENSG00000206435; homo_sapiens. DR Ensembl-Gn; ENSG00000206452; homo_sapiens. DR Ensembl-Tr; ENST00000400341; homo_sapiens. DR Ensembl-Tr; ENST00000400394; homo_sapiens. XX FH Key Location/Qualifiers FH FT source 1..3903 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL-C-2596" FT /db_xref="taxon:9606" FT exon 1..568 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=1 FT CDS join(496..568,699..968,1215..1490,2078..2353,2475..2594, FT 3034..3066,3174..3221,3386..3390) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /product="MHC class I antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:Q5RIP0" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:Q5RIP0" FT /protein_id="SPR56238.1" FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR FT FIAVGYVDDTQFVQFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVNLRK FT LRGYYNQSEAGSHTLQRMYGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADKA FT AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKKTLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWGPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT intron 569..698 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=1 FT exon 699..968 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=2 FT intron 969..1214 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=2 FT exon 1215..1490 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=3 FT intron 1491..2077 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=3 FT exon 2078..2353 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=4 FT intron 2354..2474 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=4 FT exon 2475..2594 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=5 FT intron 2595..3033 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=5 FT exon 3034..3066 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=6 FT intron 3067..3173 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=6 FT exon 3174..3221 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=7 FT intron 3222..3385 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=7 FT exon 3386..3903 FT /gene="HLA-C" FT /allele="HLA-C*05:new" FT /number=8 XX SQ Sequence 3903 BP; 764 A; 1088 C; 1204 G; 847 T; 0 other; ttattttgct ggatgtagtt taatattacc tgaggtaagg taaggcaaag agtgggaggc 60 agggagtcca gttcagggac ggggattcca ggagaagtga aggggaaggg gctgggcgca 120 gcctgggggt ctctccctgg tttccacaga cagatccttg gccaggactc aggcacacag 180 tgtgacaaag atgcttggtg taggagaaga gggatcagga cgaagtccca ggtcccgggc 240 ggggctctca gggtctcagg ctccaagggc cgtgtctgca ctggggaggc gccgcgttga 300 ggattctcca ctcccctgag tttcacttct tcttccaacc tgcgtcgggt ccttcttcct 360 gaatactcat gacgcgtccc caattcccac tcccattggg tgtcgggttc tagagaagcc 420 aatcagcgtc tccgcagtcc cggttctaaa gtccccagtc acccacccgg actcggattc 480 tccccagacg ccgagatgcg ggtcatggcg ccccgaaccc tcatcctgct gctctcggga 540 gccctggccc tgaccgagac ctgggcctgt gagtgcgagg ttgggaggga aacggcctct 600 gcggagagga gccaggggcc cgcccggcga gggcgcagga cccggggagc cgcgcaggga 660 ggagggtcgg gcgggtctca gcccctcctc gcccccaggc tcccactcca tgaggtattt 720 ctacaccgcc gtgtcccggc ccggccgcgg agagccccgc ttcatcgcag tgggctacgt 780 ggacgacacg cagttcgtgc agttcgacag cgacgccgcg agtccaagag gggagccgcg 840 ggcgccgtgg gtggagcagg aggggccgga gtattgggac cgggagacac agaagtacaa 900 gcgccaggca cagactgacc gagtgaacct gcggaaactg cgcggctact acaaccagag 960 cgaggccggt gagtgacccc ggcccggggc gcaggtcacg acccctcccc atcccccacg 1020 gacggcccgg gtcgccccga gtctcccggt ctgagatcca ccccgaggct gcggaacccg 1080 cccagaccct cgaccggaga gagccccagt cacctttacc cggtttcatt ttcagtttag 1140 gccaaaatcc ccgcgggttg gtcggggctg gggcggggct cgggggacgg ggctgaccac 1200 gggggcgggg ccagggtctc acaccctcca gaggatgtat ggctgcgacc tggggcccga 1260 cgggcgcctc ctccgcgggt ataaccagtt cgcctacgac ggcaaggatt acatcgccct 1320 gaatgaggac ctgcgctcct ggaccgccgc ggacaaggcg gctcagatca cccagcgcaa 1380 gtgggaggcg gcccgtgagg cggagcagcg gagagcctac ctggagggca cgtgcgtgga 1440 gtggctccgc agatacctgg agaacgggaa gaagacgctg cagcgcgcgg gtaccagggg 1500 cagtggggag ccttccccat ctcctgtaga tctcccggga tggcctccca cgaggagggg 1560 aggaaaatgg gatcagcgct ggaatatcgc cctcccttga atggagaatg ggatgagttt 1620 tcctgagttt cttctgaggg ccccctctgc tctctaggac aattaaggga tgaagtcctt 1680 gaggaaatgg aggggaagac agtccctgga atactgatca ggggtcccct ttgaccactt 1740 tgaccactgc agcagctgtg gtcaggctgc tgacctttct ctcaggcctt gttctctgcc 1800 tcacgctcaa tgtgtttaaa ggtttgattc cagcttttct gagtccttcg gcctccactc 1860 aggtcaggac cagaagtcgc tgttcctccc tcagagacta gaactttcca atgaatagga 1920 gattatccca ggtgcctgtg tccaggctgg cgtctgggtt ctgtgccccc ttccccaccc 1980 caggtgtcct gtccattctc aggatggtca catgggcact gttggagtgt cgcaagagag 2040 atacaaagtg tctgaatttt ctgactcttc ccgtcagaac acccaaagac acacgtgacc 2100 caccatcccg tctctgacca tgaggccacc ctgaggtgct gggccctggg cttctaccct 2160 gcggagatca cactgacctg gcagcgggat ggcgaggacc aaactcagga caccgagctt 2220 gtggagacca ggccagcagg agatggaacc ttccagaagt gggcagctgt ggtggtgcct 2280 tctggagaag agcagagata cacgtgccat gtgcagcacg aggggctgcc agagcccctc 2340 accctgagat ggggtaagga gggggatgag gggtcatgtg tcttctcagg gaaagcagaa 2400 gtcctggagc ccttcagccg ggtcagggct gaggcttggg ggtcagggcc cctcaccttc 2460 ccctcctttc ccagggccat cttcccagcc caccatcccc atcgtgggca tcgttgctgg 2520 cctggctgtc ctggctgtcc tagctgtcct aggagctgtg atggctgttg tgatgtgtag 2580 gaggaagagc tcaggtaggg aaggggtgag gagtggggtc tgggttttct tgtcccactg 2640 ggagtttcaa gccccaggta gaagtgtgcc ccacctcgtt actggaagca ccatccacac 2700 atgggccatc ccagcctggg accctgtgtg ctagcactta ctctgttgtg aagcacatga 2760 caatgaagga cagatgtatc accttgatga ttatggtgtt ggggtccttg attccagcat 2820 tcatgagtca ggggaaggtc cctgctaagg acagacctta ggagggcagt tgctccagaa 2880 cccacagctg ctttccccgt gtttcctgat cctgccctgg gtctgcagtc atagttctgg 2940 aaacttctct tgggtccaag actaggaggt tcccctaaga tcgcatggcc ctgcctcctc 3000 cctgtcccct cacagggcat tttcttccca caggtggaaa aggagggagc tgctctcagg 3060 ctgcgtgtaa gtgatggcgg tgggcgtgtg gaggagctca cccaccccat aattcctctt 3120 gtcccacatc tcctgcgggc tctgaccagg tctttttttt tgttctaccc cagccagcaa 3180 cagtgcccag ggctctgatg agtctctcat cgcttgtaaa ggtgagattc tggggagctg 3240 aagtggtcgg gggtggggca gagggaaaag gcctaggtaa tggggatcct ttgattggga 3300 cgtttcgaat gtgtggtgag ctgttcagag tgtcatcact taccatgact gacctgaatt 3360 tgttcatgac tattgtgttc tgtagcctga gacagctgcc tgtgtgggac tgagatgcag 3420 gatttcttca cacctttcct ttgtgacttc aagagcctct ggcatctctt tctgcaaagg 3480 catctgaatg tgtctgcgtt cctgttagca taatgtgagg aggtggagag acagcccacc 3540 cccgtgtcca ccgtgacccc tgtccccaca ctgacctgtg ttccctcccc gatcatcttt 3600 cctgttccag agaagtgggc tggatgtctc catctctgtc tcaactttac gtgtactgag 3660 ctgcaacttc ttacttccct actgaaaata agaatctgaa tataaatttg ttttctcaaa 3720 tatttgctat gagaggttga tggattaatt aaataagtca attcctggaa gttgagagag 3780 caaataaaga cctgagaacc ttccagaatc cgcatgttcg ctgtgctgag tctgttgcag 3840 gtgggggtgg ggaaggctgt gaggagacga gtgtggacgg ggcctgtgcc tagttgctgt 3900 tca 3903 //