Dbfetch
ID LR813353; SV 1; linear; genomic DNA; STD; HUM; 7050 BP. XX AC LR813353; XX PR Project:PRJEB37962; XX DT 28-APR-2022 (Rel. 144, Created) DT 29-APR-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens HLA-DQB1 gene for MHC class II antigen, allele DE HLA-DQB1*03:03:02:02Confirmation XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Marsh GE S., Barker JOHN D.; RT ; RL Submitted (11-JUN-2020) to the INSDC. RL ANRI, HLA Informatics Group, Royal Free Hospital, London, NW3 2QG, NW3 2NU, RL United Kingdom XX DR MD5; 4bf47cc6136b53486718b93f8b964200. XX FH Key Location/Qualifiers FH FT source 1..7050 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="AN300421" FT /db_xref="taxon:9606" FT CDS join(411..519,1964..2233,4764..5045,5561..5671,6154..6177, FT 6788..6801) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02Confirmation" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="CAC9884440.1" FT /translation="MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKG FT MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPLGPPDAEYWNSQKEVLERTR FT AELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW FT FRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRA FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGPQGPPPAGLLH" FT exon 411..519 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02Confirmation" FT /number=1 FT intron 520..1963 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02Confirmation" FT /number=1 FT exon 1964..2233 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02Confirmation" FT /number=2 FT intron 2234..4763 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02Confirmation" FT /number=2 FT exon 4764..5045 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02Confirmation" FT /number=3 FT intron 5046..5560 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02Confirmation" FT /number=3 FT exon 5561..5671 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02Confirmation" FT /number=4 FT intron 5672..6153 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02Confirmation" FT /number=4 FT exon 6154..6177 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02Confirmation" FT /number=5 FT intron 6178..6787 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02Confirmation" FT /number=5 FT exon 6788..6801 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:03:02:02Confirmation" FT /number=6 XX SQ Sequence 7050 BP; 1784 A; 1628 C; 1707 G; 1931 T; 0 other; tttgccctac tgaaagaatc ccaagtataa aaacaaccag tttttaatca atattacaaa 60 gatgtttact gttgaatcgc atttttcttt ggcttcttaa aatcccttag gcattcaatc 120 ttcagctctt ctataattga gaggaagttt tcacctcaaa tgttcatcca gtgcaatttg 180 aagacgtcac agtgccaggg actggattga gaaccttcac aaaaaaaaaa tgtctgccta 240 gagacagatt aggtccttca gctccagtgc tgattggttc ctttccaaag gaccatccaa 300 tcctgccacg cagggaaaca tccacaggtt tttattcttt ctgccaggta catcagatcc 360 atcaggtcca agctgtgttg actaccacta cttttccctt cgtctcaatt atgtcttgga 420 agaaggcttt gcggatccct ggaggccttc gggtagcaac tgtgaccttg atgctggcga 480 tgctgagcac cccggtggct gagggcagag actctcccgg taagtgcagg gccactgctc 540 tccagagccg ccactctggg aacaggctct ccttgggctg gggtaggggg atggtgatct 600 ccatgatctc ggacacaatc tttcatcaac atttcctctc tttggggaaa gagaacgatg 660 ttgcattccc atttatcttt tagtgatgag gtgagcacag tcggatcccc atcctacagg 720 cttaagcctg gaagagaagg agagaggaga ggaaagagga gacaaagtgt acatttacta 780 ccagtgacag gacaaagtga gcatggggtt atttttgaag atacgaattt ctccagagac 840 acagcaggat ttgtcattta ggcgtgcccc aagactttgc ctggactaaa tattatggga 900 tcctgcattg ggaaatgtaa ggcagcaatg gtgtctgtag tctccgtatt tgaggaaaag 960 ttgtctgtat tcctgactga ctggaacgtt tgtggaggca aaatcttggt actgaaggaa 1020 gctgactgga tgaccacaga cagggagtct tcaggtttca ctgatttatg ggcaaatggt 1080 gacttgagtg ggattcagag acccgagttg gtggactgaa tttagcagaa aggaggatgt 1140 aaagaaggga aataacatat attgtgaaac cactcatttc agacacagca caatacttta 1200 cataaattct ctctcactcc ttctaacatc ctgtgtgtag atatcatgat tttcttttac 1260 acaattatac ttgtgatatg gatattctgt tacatacctg ccctagctgg tgactgccac 1320 agcttaattg gaatctagtt tatcaaattc aaaagcttgt gctctttcca tgaataaatg 1380 tttctttcta ggactcggag gtgtaggtcc tttctaacat aaaagtgagt gaacctcaca 1440 tggcattcgg aagggtaaat ccaggcatgg gaagggaggt attttaccga gggaccaaga 1500 gaatacgcat atcagaacga ggacaggctt aatttctgga cccgtctcat cattcccttg 1560 aactcacagg tttatgtgga taattttatc tctgaggttt ccaggagctc aatggaaaat 1620 gggatttcat gcgagagcgc cctgattccc tctaagtgca gaggtctatg taaaatcagc 1680 ccgactgcct cttccctcgg ttcacaggct ccggcaggga cagggctttc cgccctttcc 1740 tgcctgcagg aaggcggatt cccgaagccc ccagagaggg cgggcagggc tgggcagagc 1800 cgccgggcgg atcacaagtc tggagcgcca ggcacgggcg ggcgggaact ggaggtcgcg 1860 cgggcggttc cacagctccg ggccgggtca gggcggcggc tgcgggggcg gccgggctgg 1920 ggccgggccg gggcctgact gaccggccgg tgattccccg cagaggattt cgtgtaccag 1980 tttaagggca tgtgctactt caccaacggg acggagcgcg tgcgtcttgt gaccagatac 2040 atctataacc gagaggagta cgcacgcttc gacagcgacg tgggggtgta tcgggcggtg 2100 acgccgctgg ggccgcctga cgccgagtac tggaacagcc agaaggaagt cctggagagg 2160 acccgggcgg agttggacac ggtgtgcaga cacaactacc agttggagct ccgcacgacc 2220 ttgcagcggc gaggtgagcg tcgtcgcccg tctgcgaggc ccatccttgg caggggccca 2280 gagtctctgc gccaggaggg gcgaaggggg cgcggcctct ggaacctgag ccttgttcgt 2340 tccaccccgg ctgacaggag gaggcggtgg gggtgctggg ggctggtgca tcggaggggc 2400 agggacctag ggcagagcag gggaacaggc agagttggtc aagctgccta gtttcgcccc 2460 atcctccccg tccgtcggcc tcgccctctg ctctgcacgt tcttgcctcg tgccttatgc 2520 gtttgcctcc tcgtgcctta cctttactaa gcagttctct ctgcccccaa tttccgccct 2580 cttcccctgc ccgcccgccc ggctagcact gccgcacccg gcaaggtcca cctacacagc 2640 tcatgcagtg ggaagcttca gacttggcct gatggagtta gggctgcccc acaactgcgc 2700 gcagggcatc cagcaattac agttgtcaaa taagatattt tgacttttga cttcaaatta 2760 ttattcatcg taattctgtt ttcttaaatg gctctcattc atggcggagc tctttgagat 2820 gagagtgttt taatcattgc atgcctggta tctgacacat tgactggcat gtggtatgag 2880 ctcaatgatc ttctgttaaa ttaatgaata aatgtgctca gctgccaatc cacttaggct 2940 caagggaaag cagaggataa atagagcctt aaaaatggac ttttattaat tattttctgt 3000 cattttgctt aattctttaa agtaaactct tattgacttg gatcttaata gagtttgtga 3060 atacaaagtc tgaggaaaaa agtgtttgct aaaaataaaa acaacacttg aatgatgttt 3120 gtaaggcagt tttaatttct tagaaaagct gaacaaatgg cacaatgcaa agagcagaag 3180 ttttggaata aatagattga agcaattaaa ttattggata aaaatagttt caggttgctt 3240 ttggcttagg ttctcccctc cccccatcac tatccacttc aggaataaac attctgaaag 3300 tcaattttac ccatttagtg agcacttatt tctagacagt taccttatca aataccgtct 3360 atgttacgtc atttaatctc acagttgcct gtgcattaga gattagcatc accactttat 3420 atatcctaat attagtacat gacaaacact ttaagtaatc agcccacaag tactcaccaa 3480 gaccttaagc ctcccaaagt acacaatatt ctttatgttc ttcactacac atctatagag 3540 tcaaagggac ataaagcctt gttaaagcca gttttgacta gaagcagcaa tgagtctctt 3600 cctgtttgat ctccatgtta atgggacaaa atgatacttt caaggcattg aaaatttatg 3660 attaatcaat ccctagtctg actccagtgt tacctatgca gattcacaaa acttttagtt 3720 tactttaaac tcccttgcct tcttttgact cacatcgtag tgccagcaag tacttacatt 3780 tttgctattt tggttctatt tccataaaat ttattttatc atcttttctc ataagtttgt 3840 gccctctatt ttactcccag tctgtgtaag atgaacaaat cttataaagc cacatagctg 3900 actgtgattt caggtggact ccaggaagga gaaccaaaga aaagttcaag tccaagcaga 3960 aaccgtgatt ccttccggat gatggctcaa gagtgccttt taattggggt gcaacctgct 4020 gacctcagca aatctcagct atatttatat gttcacatta caggctcatt aacctaggct 4080 gatctctgca aggatctcag aatattttct acagataaca tacatgataa tatctgattt 4140 caggacaaaa aagtaattct caatagcaag ggaatggagt agggtagaca gctagtaatt 4200 aaactcactt gtatgttaaa aataaattaa ggaaaaaaag aaaatgagag aacatattac 4260 taaataaaga aagcatacat taaatattta ctatagtttc acactaagag aataaaggaa 4320 atgcaataaa gtggcctgaa agataaagga tgagatgtgt aaagagacag ggaaagatgt 4380 gtcatttttt tactatgagc agcagtctga gaagataaag gaatcgagtt atgggcaaac 4440 atgatgtttg atcagtgtta tttgttttga aggcctgcct acttttgttt caaatattac 4500 agacttttga aatcacattc tttttgtttt ttgctgtctg ttactagatc gcacattctg 4560 taaaggcagg gaccatggta tgttgtttat ctttggattc tcagtgattg tcatatttat 4620 atttgttgaa tgaatcttaa tccaagactt ggactccagg tatctttcca ctctggttcc 4680 aaggagggac cattcccaat ggtagacgtg ctgtgtggtc tcacatctca ctcctgtctt 4740 ttcctgtctg ttactgccct cagtggagcc cacagtgacc atctccccat ccaggacaga 4800 ggccctcaac caccacaacc tgctggtctg ctcagtgaca gatttctatc cagcccagat 4860 caaagtccgg tggtttcgga atgaccagga ggagacaact ggcgttgtgt ccacccccct 4920 tattaggaac ggtgactgga ccttccagat cctggtgatg ctggaaatga ctccccagcg 4980 tggagacgtc tacacctgcc acgtggagca ccccagcctc cagaacccca tcatcgtgga 5040 gtggcgtaag gggatattga gtttctgtta ctatgggccc cacaagacaa agggcagagc 5100 tccttctgac ccattccttc ccatctctta tccctgatgt cactactgag ctggggatca 5160 caggagacta gagcacctct tgctccatgg caagtgcatc agaagaatcc tgatctcatc 5220 acctttccag atgctaggga aattattcta cgtactgttt ctccagatcc cagtcctgat 5280 agctcggagg gacttattat tagggctggt gactgggatc ttagggttta aggtatggat 5340 gagttcctga ggagtggaga tctgcttccc cgctctctca cctactcact gtaccgaagg 5400 acctattggc tggctttccc ctcccttagg ggtggtctga atggaggact aggttccttt 5460 gacactttca cctcctgcat ctcagactgg acttcagctc ctcagcaggg atgctatggg 5520 gtgtagggac aaacactgac actcaggctc tgcttcttag gggctcagtc tgaatctgcc 5580 cagagcaaga tgctgagtgg cattggaggc ttcgtgctgg ggctgatctt cctcgggctg 5640 ggccttatta tccatcacag gagtcagaaa ggtgaggaac cccaagggaa aaggggaaga 5700 tgggctgtga cccagaccct ctgttcaggg aggtcctgtc tctagatgtg gctctttcct 5760 cctgaccctg agaggaagaa aactgagctg gaggtgggag gagacaggac aagattggag 5820 gaggcactgg aatctgattt tactagttga aaggtagccc tgtcacacag gtgactgata 5880 gagcttattc caggatgtac ttaccattca tcgtctcatt ggctcctttc caaaagcttc 5940 ctccattaag agggtcagag ccttggcctc cttgccttct agtgacaatt ttctttgttt 6000 taggggattt taaattaggg tacttaaggc cttgaagaac atgagtggta agagaatata 6060 actctaatta agtcacatgt gtcattttcc tttggggtga gagagtggct gtttgtgtaa 6120 tgagaccttt ctctgcataa cttccttttg taagacctca agggcctcca ccagcaggtg 6180 atatttcagc catgagccag tgtggggggg cacaggtgta agagggaaga gcatgagctg 6240 aatgcacctg accacaatgg tctctgttca tggtatattt gctgctatga ggatcaagac 6300 ttagggtcga agtttgccag tttctaggaa tctccagagg ttgttcccca gaaccaagcc 6360 ttaactttgg tggtatcttc ttgtgaaatg tgaagccaga accacagctt aaatgttaga 6420 caagaggatg atgcccactt tgtgccacat gttggtggct actgcctgta ggcattttcc 6480 agtgactgaa agaggctgct agtggtaggg atgaggtatc atccaatttt ctaaaaagat 6540 tgaacccttc atattcccca gaagagtaac agctgttcca ccacttccca cacatctgca 6600 tcaagctgaa gttctgtgtc ctcatgagct gatttcacct ttgcacagat cttgcgggag 6660 gtgacgataa tacattctgg acctcagctt tctctgtctg aagctgcagg gggcccctga 6720 ggggtggggg agattgcagg cccaccagcg taccctgtgc tgatcatccc tcttctctct 6780 tcttcagggc tcctgcactg actcctgaga ctattttaac tgggattggt tatcactttt 6840 ctgtaacgcc tgcttgtccc tgcccagaat tcccagctgc ctgtgtcagc ctgtcccccg 6900 agatcagagt cctacagtgg ctgtcacgca gccaccaggt catctccttt catccccacc 6960 tcgaggctga tggctgtgac cctgcttcct gcactgaccc agagcctctg cctgtgcacg 7020 gccagctgcg tctactgagg tcccaagggg 7050 //