Dbfetch
ID LR813250; SV 1; linear; genomic DNA; STD; HUM; 7028 BP. XX AC LR813250; XX PR Project:PRJEB37962; XX DT 28-APR-2022 (Rel. 144, Created) DT 29-APR-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens HLA-DQB1 gene for MHC class II antigen, allele DE HLA-DQB1*06:09:01:02Confirmation XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Marsh GE S., Barker JOHN D.; RT ; RL Submitted (11-JUN-2020) to the INSDC. RL ANRI, HLA Informatics Group, Royal Free Hospital, London, NW3 2QG, NW3 2NU, RL United Kingdom XX DR MD5; dfaab90b0b7e93bbc0c23f9deb72229b. XX FH Key Location/Qualifiers FH FT source 1..7028 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="1416-1188" FT /db_xref="taxon:9606" FT CDS join(408..516,1948..2217,4767..5048,5558..5668,6133..6156, FT 6766..6779) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:02Confirmation" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="CAC9884337.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVYQFKG FT MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPVAEYWNSQKEVLERTR FT AELDTVCRHNYEVGYRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVQW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGPQGPPPAGLLH" FT exon 408..516 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:02Confirmation" FT /number=1 FT intron 517..1947 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:02Confirmation" FT /number=1 FT exon 1948..2217 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:02Confirmation" FT /number=2 FT intron 2218..4766 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:02Confirmation" FT /number=2 FT exon 4767..5048 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:02Confirmation" FT /number=3 FT intron 5049..5557 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:02Confirmation" FT /number=3 FT exon 5558..5668 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:02Confirmation" FT /number=4 FT intron 5669..6132 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:02Confirmation" FT /number=4 FT exon 6133..6156 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:02Confirmation" FT /number=5 FT intron 6157..6765 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:02Confirmation" FT /number=5 FT exon 6766..6779 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:02Confirmation" FT /number=6 XX SQ Sequence 7028 BP; 1772 A; 1620 C; 1702 G; 1934 T; 0 other; tttgctttat taaaaatccc aagtataata acaactggtt tttaacaata ttacagagat 60 gtttactgtt gaatcgcatt tttttctttt gcctctcaaa atccccgagg cattcgttct 120 tcagctcttc tataatcgag aggaaatttt cacctcagat gttcatccag tacaatttga 180 agacgtcaca gtgccaggca ctggattgag aaccttcaca aaaaaaatgt ctgcccagag 240 acagatgagg tccttcagct ccagtgctga ttggttcttt tccgagggac catccaatcc 300 tgccactcac ggaaacatcc acaggttttt attctttctg ccaggtacat cagatccatc 360 aggtccgagc tgtgttgact accactgctt ttcccttcgt ctcagttatg tcttggaaga 420 aggctttgcg gatccccgga gaccttcggg tagcaactgt caccttgatg ctggcgatgc 480 tgagctccct actggctgag ggcagagact ctcccggtaa gtgcagggca gctgctctcc 540 agagccgcca ctctgggaac aggctctcct tgggctgggg tatgggggat ggtgatctct 600 atgatcttgg acacaatctt tcatcaacat ttcctctctc ttgggaaaga aagctatgtt 660 gcattcccat ttatctttta gtgatgagat gaggacaatc caatccccat cctacaggct 720 taagcctgga agaggaggag agaggagaga aagaggagat aaagtgtaca tttactacca 780 gcgataggac aaagtgagca tggggttatt tttgaagata tgaatttctc caaagacaca 840 gcaggatttg tcatttaggc gtgccccaag actgcctgga cttaggatta tgagatcctg 900 cattggaaaa tgtgaggcag caatggtgtc tgtagtttct gtatttgagg aaaatttgtc 960 tctattcctg accgagtgga gcatttgtgg aggcaaaatc ttggtgctga gggaagctga 1020 ctggctgacc acagagaggg agtcttcggg tttcactgat ttatgggcaa atggtgactt 1080 gagtgggatt cagagacccg agttaatggt ggactgaatt tagtaggaag gaggatgtaa 1140 agaagggaaa taacacatat tgtgaaacca ctcacttcag acagaacaat actttatata 1200 acttctctct cactccttct aacatcctgt gtgtagatat catgattttc ttttacacaa 1260 ttatacttgt gatatggata ttctgttaca taacctgccc aaactggtga ctgccacagt 1320 ttaattggaa tctagtttat caaattcaaa agcttgtgct ctttccatga ataaatgtct 1380 ctatctagga ctcagaggtg taggtccttt ccaacataga agggagtgaa cctcaacggg 1440 acttgggagg gtaaatctag gcatgggaag gaaggtattt tacccaggga ccaagagaat 1500 acgcgtgtca gaacgaggcc aggcttaatt cctggaccta tctcgtcatt ccgttgaact 1560 ctcagattta tgtggataac tttatctctg aggtatccag gagcttcatg aaaaatggga 1620 tttcatgcga gaacgccctg atccctctaa gtgcagaggt gcatgtaaaa tcagcccgac 1680 tgcctcttcg ctgggttcac aggctcaggc agggacaggg ctttcctccc tttcctggat 1740 gtaggaaggc agattccaga agcccgcaaa gaaggcgggc agagctgggc agagccgccg 1800 ggaggatccc aggtctggag cgccaggcac gggcgggcgg gaactggagg tcgcgcgggc 1860 ggttccacag ctccaggccg ggtcagggcg gcggctgcgg gggcggccgg gctggggcct 1920 gactgaccgg ccggtgattc cccgcagagg atttcgtgta ccagtttaag ggcatgtgct 1980 acttcaccaa cgggacggag cgcgtgcgtc ttgtaaccag atacatctat aaccgagagg 2040 agtacgcgcg cttcgacagc gacgtggggg tgtaccgggc ggtgacgccg caggggcggc 2100 ctgttgccga gtactggaac agccagaagg aagtcctgga gaggacccgg gcggagttgg 2160 acacggtgtg cagacacaac tacgaggtgg ggtaccgcgg gatcctgcag aggagaggtg 2220 agcgtcgtcg cccctccgtg aggcgcaccc ttggccggga ccccgagtct ctgtgccggg 2280 aggggcgatg ggggcgaggt ctctgaaatc tgagcccagt tcattccacc ccaggggaaa 2340 ggaggcggcg gcggggtggt gggggcaggt gcatcggagg ggcggggacc tagggcagag 2400 cagggggaca agcagagttg gccaggctgc ctagtgtccc ccccagcctc cccgtccgtc 2460 ggcctcgtcc tctgctctgc acgtttctcg cctcgtgcct tatgcgtttg cctcctcgtg 2520 ccttaccttc gctaagcagt tctctctgcc cccagtgccc accctcttcc cctgcccgcc 2580 ggcctcgcta gcactgcccc acccagcaag gcccacgtgc gcagcttgcg ccgcaggaag 2640 cttcaggctt ggcctggtgg agttagggct gccccacaac tgcgcgcagg gcatccagca 2700 attacagttg caaaataaga tattttgact ttttggcttc aaatcattat tcatcgtaat 2760 tctgttttct taaatggcta ccactaatgg cggagatctt tgaggcgaga gactgtttaa 2820 ttattgcatg cctggtacct gacacattga ctggtatgtg gtgtgagctc aatgatcttc 2880 tgttaaattc atgaataaat gtactcagct gccaatccag ttaggttcaa gaaaaaaaca 2940 gaggcttaca aatgaacttt atcaattatt ttctatcatt ttgcttaatg ctttcaagta 3000 aactcttact gacttggatc ttaatagaat ttgtgaatac aaagtctgag gaaaatgtgt 3060 ttgctaaaaa taaaaacaat gcttgaatga tgttgtaagg cagagtttta atttcttaga 3120 aaagctgaac aaatagcact atgcaaagat cagaagtttg ggaataaata ggttgaagct 3180 attaaattat tggataaaaa tagtttcagg ttgcttttgg cctaggttat cccctcctcc 3240 catcactatc cacttcagga ataaacattc tgaaagtcaa ttttacccat tcaggaagca 3300 cttatttcta gacagttgcc ttatcaaata ccatctatat tatgtcattt aatctcgcag 3360 ctacctgtgc attagagatt agcatcacca ctttatatat cctaatattg gtacatgata 3420 aacactttaa gtaatcagcc cacaattact caccaagatc ttaagcctcc caaagtacac 3480 aacattctta tgttcctcac tacacatctg tagagtctaa gggatgtaag gccttgttaa 3540 agccagtttt gaccagaagc agcaatgagt ctattcctgt ttgttctcca tgttaatgcg 3600 gcattgaaaa ttcatgatta atcaatccct agtctgaccc cagtgttatc tatgcaggtt 3660 cacaaaactt ttagtttgct ttacactccc ttgccttctt ttgactcaca tcctaatgcc 3720 agcaagtact tatatttttg ctatttcagt tttatttcca tgaaatttat tttatcatct 3780 tttctcataa atttgtgccc tctattttta ctcccagtct gttgaagatg aacaaatctt 3840 ataaggccac atagctgact ctgatttcag ttggcctcca ggaaggagaa cctaaagaaa 3900 agttcaagtc caagcagaaa ccatgattcc ttccggatga tggctcaaga gtgccattta 3960 attggggtgc cacctgctga cctcagcaaa tcccagttat atgtatatgt tcacattaca 4020 ggctcattag cccaggccga cctctgcacg gatctcagaa tattttctgt ggagaacata 4080 cacgataatg tctgatttca gaacaagaaa gtaattgtca atagcaagga aatggagtag 4140 ggtagacagc tagtaattaa actcacttgt gcgttaaaaa gaaattaagg aaaaaaagaa 4200 aatgagagaa catattacta aataaagaaa gcacacatta aatatttgct atagtttcac 4260 actaagagaa taaaggaaat gtgataaagt ggcctaaaag gtaaaggatg agatgtgtaa 4320 aagaggcggg gaaagatgtg tcattttttt tactatgagc agcaatctga gaagataaag 4380 gaattgagtt gtggacaaac atgatgtttg atcaagggtt atttgttttg aaggcctgcc 4440 tacttttttt tcaaatatta caaacttttg aaataacatt ctactttttt ttcaaatatt 4500 acaaactttt gaaataacat tctttttgtt ttttgctgtc tgttactaga ttgcacattc 4560 tataaatgca gggaccatgg tatgttattt atctttgaat tttcagtgat tgtcaaattt 4620 atatttgttg aatgaacctt aatccaagac ttggactcca ggtatctttc cactctggtc 4680 caaggaggga tccttcctca tggtagacgt ggtgtgtgtt ctcacatctc actcctatgt 4740 cttttcctgt ctgttactgc cctcagtgga gcccacagtg accatctccc catccaggac 4800 agaggccctc aaccaccaca acctgctggt ctgctcggtg acagatttct atccaggcca 4860 gatcaaagtc cagtggtttc ggaatgatca ggaggagaca gccggcgttg tgtccacccc 4920 ccttattagg aatggtgact ggactttcca gatcctggtg atgctggaaa tgactcccca 4980 gcgtggagat gtctacacct gccacgtgga gcaccccagc ctccagagcc ccatcaccgt 5040 ggagtggcgt aaggggatat tgagtttctg ttactatggg cccacaagac aaagagctcc 5100 ttctgaccca ttccttccca tctcttatcc ctgatgtcac tactgagctg ggaatcacag 5160 gagactagag cacctcttgc tccatggcaa gtgcatcaga agaatcctgg tctcatcacc 5220 tttccagatg ctagggaaat tactctgcat actgttgctc tgaatcccag tcctgatagc 5280 tctgagggac tgattcttag ggctggtgac tgggatctta gggtctaagg ttatggatga 5340 gttcttgaag agcagagatt tgcttcccca ctctctcacc tattcactgt atccaaggac 5400 ctattggctg gtctttcccc tccttagggg tggtctgaat ggagaactag tttcctttga 5460 tgccttcacc ttctgcacct cagactggac ttcaactcct cagcagggat gctatggggt 5520 gtggggacaa acacagacac tcagttctgc tctttagggg ctcagtctga atctgcccag 5580 agcaagatgc tgagtggcgt tggaggcttc gtgctggggc tgatcttcct tgggctgggc 5640 cttatcatcc gtcaaaggag tcagaaaggt gaggaacccc aggggaaaag gggaagatgg 5700 gctgtgaccc agaccctctg ttcagagtgg tcctgtctgt agattagctc tttcctcctc 5760 accctgagag gaagtgcgag gagacaggac aagatgggag gaggcattgg aatctgattt 5820 tactggttga aaggtagcgc tgtcacagag ctgactgata gagcttattc cagggcatcc 5880 ttaccattca tcattgtctc actggctcct ttccaaaagc ttcctccatt aagagggtca 5940 gagcctcaac ttcctttctt tctagtgaca atttcctttg ttttagggga ttttaaatta 6000 gggtgctgaa ggcctggaag aacatgggtg ggaagagaat gtaactctaa gtcatgtgtg 6060 tcattttcct ttggggtgag agagtggctg tttgtgtaat gagacctttc tctgcataac 6120 ttccttttgt aagacctcaa gggcctccac cagcaggtaa tatttcagcc atgatccagt 6180 gtgggtaggc acaggtataa gagggaagag catgagctga gtgtacctga ccacagtggt 6240 ccatgttcat ggcctatttg ctgctatgag gatcaagact taggggagaa gtttgccagt 6300 ttctaggaat ctccagacat tgttccccag aaccaagcct taactttggt ggcatcttct 6360 tgtgaaatgt ggagccagaa ccacagctta aatgttagac actaggatga tgcccacttt 6420 gtgccacatg atggtggcta ctgcctgtag gcattttcca gtgactgaaa gaggctgcta 6480 gtggtcggga agagatatca tccaatttcc taaaaagact gaacccttca tattccccag 6540 aagaataaca gctgttcccc acctccctca catctgcatc aagctgaagt tctgtgtcct 6600 catgagctga tttcaccttt gcacagatct tgggggaggt gatgacaata caccctggac 6660 ctcaactttc tctgtctgaa gctgcagggg gccgctgaag ggtgggggag atggcaggcc 6720 caccaggata ccctgtgctg atcaatgctc ttctctcttc tccagggctt ctgcactgac 6780 tcctgagact attttaacta ggattggtta tcactcttct gtgatgcctg cttgtgcctg 6840 cccagaattc ccagctgcct gtgtcagctt gtccccctga gatcaaagtc ctacagtggc 6900 tgtcacgcag ccaccaggtc atctcctttc atccccaccc caaggcgctg gctgtgactc 6960 tgcttcctgc actgacccag agcctctgcc tgtgcacggc cagctgcgtc tactcaggtc 7020 ccaagggg 7028 //