Dbfetch
ID LR812826; SV 1; linear; genomic DNA; STD; HUM; 7090 BP. XX AC LR812826; XX PR Project:PRJEB38747; XX DT 23-JUL-2020 (Rel. 144, Created) DT 23-JUL-2020 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens, HLA-DQB1 gene for MHC class II antigen, cell line DE DKMS-LSL_ID11398423_DQB1_1, allele HLA-DQB1*05:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Albrecht V., Schmidt H. A., Klussmeier A., Lange V., Putke K.; RT ; RL Submitted (09-JUN-2020) to the INSDC. RL DKMS LIFE SCIENCE LAB, Research & Development, St. Petersburger Str. 2, RL Saxony, 01069 Dresden, Germany XX DR MD5; a3afc99946f085e689990fcd13ef6b38. XX FH Key Location/Qualifiers FH FT source 1..7090 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL_ID11398423_DQB1_1" FT /db_xref="taxon:9606" FT exon 1..633 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=1 FT CDS join(525..633,2092..2361,4871..5152,5664..5774,6872..6885) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="CAC8953605.1" FT /translation="MSWKKSLRIPGDLRVATVTLMLAILSSSLAEGRDSPEDFVYQFKG FT LCYFTNGTERVRGVTRHIYNREEYVRFDSDVGVYWAVTPQGRPVAEYWNSQKEVLEGAR FT ASVDRVCRHNYEVAYRGILQRRVEPTVTISPSRTEALNHHNLLICSVTDFYPSQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSRKGLLH" FT intron 634..2091 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=1 FT exon 2092..2361 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=2 FT intron 2362..4870 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=2 FT exon 4871..5152 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=3 FT intron 5153..5663 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=3 FT exon 5664..5774 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=4 FT intron 5775..6238 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=4 FT exon 6239..6262 FT /pseudo FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=5 FT intron 6263..6871 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=5 FT exon 6872..7090 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*05:new" FT /number=6 XX SQ Sequence 7090 BP; 1795 A; 1644 C; 1707 G; 1944 T; 0 other; ttctaagacc tttgctcttc tccccaggac ttaaggctct tcagcgtgtc taagacaaca 60 gcagtaaaaa tttctgtgac agcaattttc tctcccctga aatatgatcc ccacctaatt 120 tgctttatta aaaatcccaa gtataataac aactggtttt taacaatatt acagagatgt 180 ttactgttga attgcatttt tcttttgcct ctcaaaatcc ctgaggaatt tgttcttcag 240 ctcttctata atcgagagga aattttcacc tcagatgttc atccagtgca attggaagac 300 gtcacagtgc caggcactgg attgagaacc ttcacaaaaa aaaatgtctg cccagagaca 360 gatgaggtcc ttcagctcca gtgctgattg gttcttttcc aagcgaccat ccaatcctgc 420 cacgcacgga aacatccaca ggtttttatt ctttctgcca ggtacatcag atccatcagg 480 tctgagctgt gttgactacc actacttttc ccttcgtctc aattatgtct tggaagaagt 540 ctttgcggat ccccggagac cttcgggtag caactgtcac cttgatgctg gcgatcctga 600 gctcctcact ggctgagggc agagactctc ccggtaagtg caggaaagct gctctccaga 660 gccgccactc tgggaacagg ctttccttgg gctggggtat gggggatggt gatctccatg 720 gtcttggaca caatctttca tcaacatttc ctcttttttg ggaaagaaag ctatgttgca 780 ttcccattta ccttttagtg atgaaatgag gacaatccaa tccccatcct acaggtttaa 840 gcctggaaga ggaggagaga ggagaggaaa gaggagataa agtgtacatt tactaccagt 900 gataggacaa agtgagcatg gggttatttt tgaagatatt aatttctcca aagacacagc 960 aggatttgtc atttcagcgt gccccaagac tttgcctgga ctaaatatta tgagattctg 1020 cagtgggaaa tgtaaggcag cgatggtgtc tgtagtctcc gtatttgagg aaaagtagtc 1080 tgtattcctg actgactgga gcgtttgtgg aggcaaaatc ttggtactga gggaagctga 1140 ctggctgacc acagacaggg agtcttcagg tttcactgat ttatgggcaa atggtgactt 1200 gagtgggatt cagagacccg agttgttggt ggactaaatt tagtagaaag gaggatgtaa 1260 agaagggaaa taacacatat tatgaaacca ctcactcaga cacagaacaa tactttacat 1320 aaattctctc tcactccttc taacatcctg tgtgcagata tcatgatttt cttttacaca 1380 attatacttg tgatacggat attctgccca atatggatat acacaacctg gccaagctgg 1440 taactgccac agtttaattg gaatctagtt tatcaaattc aaaagcttat gctctttcca 1500 tgaataaata tttctatcta ggactcagag ttgtaggtcc tttccaacat agaagggagt 1560 gaacctcaac gggtcttggg agggtaaatc caggcatggg aaggaaggta ttttacccag 1620 ggaccaagag aatacgcgta tcagaacgag gacaagatta attcctggac ctgtcgcatc 1680 attcccttga actcacaggt ttatgtggat aagtttatct ctgaggtttc caggagctgc 1740 atgaaaaatg ggatttcatg cgagaacgcc ccgatccctc taagtgcaga ggtccatgta 1800 aaatcagccc gactgcctct tcgctgggtt cactggctca ggcagggaca gggctttccg 1860 ccctttcctg cctgtaggaa ggcggattcc cgaagccccc agagagggcg ggcagggctg 1920 ggcagagccg ccgggaggat cccaggtctg gggcgccagg cacgggctgg cgggaactgg 1980 aggtcgcgcg ggcggttcca cagctccggt ccgggtcagg gcggcggctg ggggcgcagc 2040 cgggctaggg ccaggctggg gcctgactga ctggcccgtg attccccgca gaggatttcg 2100 tgtaccagtt taagggcctg tgctacttca ccaacgggac ggagcgcgtg cggggtgtga 2160 ccagacacat ctataaccga gaggagtacg tgcgcttcga cagcgacgtg ggggtgtact 2220 gggcagtgac gccgcagggg cggcctgttg ccgagtactg gaacagccag aaggaagtcc 2280 tggagggggc ccgggcgtcg gtggacaggg tgtgcagaca caactacgag gtggcgtacc 2340 gcgggatcct gcagaggaga ggtgagcgtc gtcgcccctc cgtgaggccc accgttggcc 2400 gggacctcta gtctctgtgc tgggaggggc gatggggttg cggcctctga aacctgagcc 2460 ccgtttattc caccccaggg gacaggagtt ggcggcgtga gtggtggggc aggtgcatca 2520 gatgggcggg gacctagggc agagcaggga gacaagcaga gttggccagg ctgcctagtg 2580 tccccccagg gtcctcgtct gttggcctcg tcctccgctc tgcacgtttc tcgcctcgtg 2640 ccttatgtgt ttgcctcctc gtgccttacc tttgctaagc agttctctct gcccccaatg 2700 cccaccctct tcccctgccc gtccgcccca ctagcactgc cccattcagc aaggcccacg 2760 tgcgcagctc gcgccgcagg aagcttcagg cttggcctgg tggagttagg gctgccccac 2820 aactgcgccc agggcatcca gcaattacag ttgcaaaata agatattttg actttttggc 2880 ttcaaatcat tattcatcgt aattctgttt tcctaaatgg ctatcactaa tggcggagat 2940 ttttgaggtg ggagactgtt taaattattg catgcttggt acctgacact ttgactggta 3000 tgtggtatga gctcaatgat cttctgttaa attcatgaat aaatgtactc agctgcccat 3060 ccacttaggc tcaagaaaaa aacagaggct tacaaatgga ctttgttaat tattttctat 3120 cattttgcct aatgctttaa agtaaactct tattgactag gatcttaata gaatttgtga 3180 atacaaagtc tgagaaaaaa agtgtttgct aaaaataaaa acaatgcttg aatgacgttg 3240 taaggcagag ttttaatttc ttagacaagc tgaacaaatg gcacaatgca aagggcagaa 3300 gtttgggaat aaataggttg aagccattaa attattagat aaaaatagtt tcaggttgct 3360 tttggcctgg gttctcccct ccctccatca ctatccactt caggaataaa cattctgaaa 3420 gtcaatttta cccattcagg tagcacttat ttctagacag ttgccttatc aaataccata 3480 tatgttgtgc catttaatct cacagttacc tgtgcattag agattagcat caccacttga 3540 tatatcctaa tattggtaca ggataaacac tttaagtaat cagcccacaa ttactcacca 3600 agaccttaag cctcccaaag tataaaccat tcttatgttc ctcagtgtac atccatagag 3660 tctaagggat gtaaggcctt gttgaagcca gttttgacca gaagcagcaa tgagcctatt 3720 cctgtttgtt ctccatgtta atggggcatt gaaaattcac tgattaatca atccctagtc 3780 tgaccccagt gttatctatg caggttcaca aaacttttag attactttac acccccttgc 3840 cttcttttga ctcacattct aatgccagca agtacttata tttttgctat ttcagttcta 3900 tttccataaa atttatttta tcatcttttc tcataaaatt gtgccctcta ttttactccc 3960 agtctgttta agatgaacaa atcttacaag gtcacatagc tgactgtgat atcagttgga 4020 ctccaggaag gagaacctaa agaaaagttc aagtccaagc agaaaccgtg attccttccg 4080 gatgatggct caagagtgat gtttaactgg gatgcaacct gctgacctca gcaaatccta 4140 gttatatgta tgtgttcaca ttacaggctc attagcccag gccgacctct gcatggatct 4200 cagaatattt tctatggaga acatacatga taatgtctga tttcagaaca agaaagtaat 4260 tctcaatagc aaggaaatgg agtagggtag acagctagta actaaactca cttgtgcgtt 4320 aagaagaaat taaggaaaaa agaaaataag agaacatatt actaaataaa gaaacacaca 4380 ttaaatattt gctatagttt cacactaaga gaataaagga aatgcaataa agtggcctga 4440 aaggtaaagg atgagatgtg taaaagaggc agggaaagat gtataataat tttttactat 4500 gagcagcaat ctgagaagat aaaggaattg agctgtgggc aaacatgatg tttgatcagt 4560 gttatttgtt ttcaaggcct gcctactttt tttttcaaat attacaaact tttgaaataa 4620 cattcttttt gttttttact gtctgttact agattgcata ttctataaat gaagggacca 4680 tggtatgttg tttatctttg gattctcagt gattgtcaaa tttatatttg ttgaaggaac 4740 cttaatccaa gacttggact ccaggtatct ttccactctg gttccaagga gggacccttc 4800 ctcatggtgg acgtgctgtg tggtctcacg tctcactcct gtgtcttttc ctgtctgtta 4860 ctgcccttag tggagcccac agtgaccatc tccccatcca ggacagaggc cctcaaccac 4920 cacaacctgc tgatctgctc ggtgacagat ttctatccaa gccagatcaa agtccggtgg 4980 tttcggaatg atcaggagga gacagccggc gttgtgtcca cccccctcat taggaacggt 5040 gactggacct tccagatcct ggtgatgctg gaaatgactc cccagcgtgg agatgtctac 5100 acctgccacg tggagcaccc cagcctccag agccccatca ccgtggagtg gcgtaaggag 5160 atattgagtt tctgttatta tgggccccac aagacaaaga gctccttctg acccattcct 5220 tcccatctct tatccctgat gtcactactg agctgggaat cacaggagac tagagcacct 5280 ctagttccat ggcgagtgca tcagaagaat cctgatctca tcacctttcc agatgctagg 5340 gaaattactc tacatactgt tgctctggat cccagtcctg atagctctga cggactgatt 5400 cttagggctg gtgattggga tcttagggtc taaggttatg gatgagttcc tgaggagcag 5460 agatttgctt ccccactctc tcacctaccc actgtatcca aggacctatt gtctggcctt 5520 tcccctcctt aggggtggtc tgaatggaga gctaggttcc tttgatgcct tcacctcctg 5580 cacctcagac tggacttcaa ctcctcagca gggatgctat ggggtgtggg gacaaacact 5640 gacactcagg ttctgctttt taggggctca gtctgaatct gcccagagca agatgctgag 5700 tggcgttgga ggcttcgtgc tggggctgat cttccttggg cttggcctta tcatccgtca 5760 aaggagtcgg aaaggtgagg aaccccaggg gaaaagggga agatgggctg tgacccagac 5820 cctctgttca gagtggtcct gtctgtagat tagctctttc ctcctgaccc tgagaggaag 5880 tgcgaggaga caggacaaga tgggaggagg cattggaatc tgattttact ggttgaaagg 5940 tagcgctgtc acagagctga ctgatagagc ttattccagg gcatccttac cattcatcat 6000 tgtctcactg gctcctttcc aaaagcttcc tccattaaga gggtcagagc ctcagcctcc 6060 tttctttctg gtgacaattt cctttgtttt aggggatttt aaattagggt gctgaaggcc 6120 tggaagaaca tgggtgggaa gagaatgtaa ctctaagtca tgtgtgtcat tttcctttgg 6180 ggtgagagag tggctgtttg tgtaatgaga cctttctctg cataacttcc ttttgtaaga 6240 cctcaagggc ctccaccagc aggtaatatt tcagccatga tccagtgtgg ggaggcacag 6300 gtataagagg gaagagcatg agctgagtgt acctgaccac agtggtccat gttcgtggcc 6360 tatttgctgc tatgaggatc aagacttagg ggagaagttt gccagtttct aggaatctcc 6420 agacattgtt ccccagaacc aagccttaac tttggtggca tcttcttgtg aaatgtggag 6480 ccagaaccac agcttaaatg ttagacacta ggatgatgcc cactttgtgc cacatgatgg 6540 tggctactgc ctgtaggcat tttccagtga ctgaaagagg ctgctagtgg tcgggatgag 6600 atatcatcca atttcctaaa aagactgaac ccttcatatt ccccagaaga ataacagctg 6660 ttccccacct cccacacatc tgcatcaagc tgaagttctg tgtcctcgtg agctgatttc 6720 acctttgcac agatcttggg ggaggtgatg acaatacacc ctggacctca actttctctg 6780 tctgaagctg cagggggccc ctgaagggtg ggggagatgg caggcccacc aggataccct 6840 gtgctgatca atcctcttct ctcttctcca gggcttctgc actgactcct gagactgttt 6900 taactaagac tggttatcac tcttctgtga tgcctgcttg tccctgccca gaattcccag 6960 ctgcctgtgt cagcttgtcc ccctgagatc aaagtcctac agtggctgtc acgcaaccac 7020 caggtcatct cctttcatcc ccaccccaag gcgctggctg tgactctgct tcctgcactg 7080 acccagagcc 7090 //