Dbfetch
ID LR745732; SV 1; linear; genomic DNA; STD; HUM; 5489 BP. XX AC LR745732; XX PR Project:PRJEB36192; XX DT 14-JAN-2022 (Rel. 144, Created) DT 14-JAN-2022 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens, HLA-DQA1 gene for MHC class II antigen, cell line DE Barretos_P6281_DQA1_1, allele HLA-DQA1*01:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Cita F R., Stelet N V.; RT ; RL Submitted (13-JAN-2020) to the INSDC. RL INSTITUTO NACIONAL DE CANCER JOSE ALENCAR GOMES DA SILVA, LABORATORIO DE RL IMUNOGENETICA, 831 EQUADOR ST. SANTO CRISTO, RIO DE JANEIRO/RJ, Brazil XX DR MD5; 3739130385d03b8a14947ba4452f47cf. XX FH Key Location/Qualifiers FH FT source 1..5489 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="Barretos_P6281_DQA1_1" FT /db_xref="taxon:9606" FT exon 1..153 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:new" FT /number=1 FT CDS join(72..153,3931..4179,4593..4874,5231..5385) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="CAA6970005.1" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPS FT GQFTHEFDGDEQFYVDLEKKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHAVTEGVSETSF FT LSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLNQPLLKHWEPEIPAPMSELTETVVCA FT LGLSVGLVGIVVGTVFIIQGLRSVGASRHQGPL" FT intron 154..3930 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:new" FT /number=1 FT exon 3931..4179 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:new" FT /number=2 FT intron 4180..4592 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:new" FT /number=2 FT exon 4593..4874 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:new" FT /number=3 FT intron 4875..5230 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:new" FT /number=3 FT exon 5231..5489 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:new" FT /number=4 XX SQ Sequence 5489 BP; 1595 A; 1150 C; 1224 G; 1520 T; 0 other; ccttgtcttg aggtcctcac aattactcta cagctcagaa caccaactgc tgaggctgcc 60 ttgggaagag gatgatccta aacaaagctc tgctgctggg ggccctcgct ctgaccaccg 120 tgatgagccc ctgtggaggt gaagacattg tgggtgagtg catgagtgag ggatgttctc 180 tggagctgaa aaacagtaaa ttgaaggaaa agagataaag cgatttgcag agaaactgta 240 gagatttcct aagggccctt tcagtattaa gacaattaaa aattatagct gttcctcctt 300 caggaaacca gagccccaac ctactctttt tgttatctat gctgttgtgt tcactaagga 360 cgctattctg tttatattat attcagtgac tacagcctgg aggtctctat gtcgttccat 420 catgattgcc tcaaaaatta gtgaggtttc catcagtgga taatttttta ttattaaaaa 480 tttatgaagt gtcattctca aatttccctg aacaactttt gaagcttttc ggatgtctcc 540 ggtggtagat cttggggtca ttccatcaat tatgtactct atagatattt aaaatgttgc 600 ccgtttcttt ctctcagact tactcacatt tccacatggg aactggcaca ggtggggagt 660 gggtaaagga gtccagcagg ctgaatgcct tcaacagtca ttttaccaca tggtcctcac 720 ttactctcag ctgcctcata tgtgtcacct cacaagtaat caaataaaat gggcatgtgg 780 ctaagttttg taaatagtga aaacatgaat gtcaattttt tttacatatt tctattacag 840 atatagcttc acatttcttt tctttagcaa aataagggat cattttattt taaaattgag 900 aagtagaaaa aattggtaaa ataaatcatt ttattctcaa attatcaacc caaattacct 960 gttcttcacc tcatctaata aagtcctata aaaagaaaag tgggccagac aaggtggctc 1020 atgcctgtaa tcccagcact ttgggaggcc gaggcaggag gatcatttga gcctgggagc 1080 ttgagaccag cctgggcaac atagcaagac ctcatctcta caaaaaaaga aaaataaaaa 1140 ttagccaggc atggtggtgt gtgcctgtgg tgccagctac tcagaaggct gccgtgggag 1200 gaccacttga gtccatgagg cggaagctgc agtgagccat gatggcacca ctacactcca 1260 gccagggcaa cagagagaga ctctgtctca aaaagaaaga ggaaagaaag caaggaacca 1320 aggaaggaag gaaggaagga gaaggaagga aggaaaagaa aagaaaaggg aagggaggaa 1380 ggaaggaaaa aagaaagacg gaaagaaaaa ggaaggaagg aagaaaggaa gcacagatta 1440 attatttggt ctcttactct cctctgcctt tgtcgtccat ctctttccac ctctcttgat 1500 gcattccttt ctcccccttc cctttcagga tccacctctg gctccctgct cctttataga 1560 tatggacagt gggtttgtaa agcaaaagtt gaaaagtcag atagttaaaa ggggaagtga 1620 actggaaggt actctaaact ttcacaactt tattaaccgt ggctgctccc attatgattt 1680 tgttcggcag tggaagtttc acctgcttct ccagagcact tggcatcttt gttccaaatt 1740 tcctttcttc agcctcacac cagagtgccc tggtcaggct cggctcatcc attaggcact 1800 atgtgggcag tgcaggggac cctccatact gtaaagccac atgagaaggt tttaacacct 1860 tttaaaatta gaaaaataat ggaatattag agcctaagaa aatgttttaa cttttaattc 1920 agcctagatt atattgtctt tataccaatt cagtcataaa atataatttt ccatattttt 1980 atggaggaag gggcccatac aagcaagaat gctcggggct cacatgtcag aatgcagcct 2040 tggtcatgac tgatcctggc gtttgtatgg ttctgctacc tgtgtgcctg tccgtcttcc 2100 ccaaaatctg tgtggtcctc gaatatagca actgtcattc aatacacatg tttgagcaca 2160 cagtgagcta agttttaagg attcaaagat gaaaagtcat gctgtcttcc ctgcagaggg 2220 tgctcagatt agtgatggaa acagtgtggg gtgcaggaaa gcagaaggcc attgctgagc 2280 agggcagtgg acccagcaga ggctgaaaca atacaagtga cttggttcca ggtgggccag 2340 cagggtgacg tcctctagca aaatttggca cccaagacaa gtaccagaag aaaagaaaga 2400 ctgcatgtat tccacatata ttcatgtttg aacaaggagt caagatttat ggcaaggata 2460 aggaggcttt gttggtgacc tgttaagacc aaccagggca gtcatgctgg atagggaaga 2520 aggtgagctg gaagaggaac agacaaactt ggacagccag atgttgagat ggaggggttg 2580 gaggtcataa tgtggtcaaa acatgttgat gagaggactc agctacaaag ttgttaactt 2640 aagcagaaac ctcaaggatg gattttagaa tttctccagg aagtcctaaa agataattcc 2700 ttttcaggga gaaaaacaac agaccactgc aaagaccagg gaacatgaaa ggataatgta 2760 gtttggcttg cttggcagat acttttgaag gatgttggac tgtaaggctg tcgatatcct 2820 cctcacagaa cttactacag tacattgtat ctgttccctt acctacctga ctcttccact 2880 attcagtttg ttccttaatg gtagaccatg cctgattggt gttttacaca tctccggcta 2940 tgtctgacac ttgtggatgc tcagaaagtg gggaaggaag gaaagatacg atggtaaaag 3000 gcttacacat gtcttgacaa gaaagtccag ttcggctcat ttggctggag tcgtactgca 3060 tggctgccat tctgctctgg catcctcaga caagcacact gcccattaga ggaaaaagtg 3120 tgaatataag tgttgagtca gaatgctgta gacatttagt aacctccttc acaggaaaaa 3180 aaaaagatgg ggggaatgac agaaatccaa aaactagtag agcttccact tttcatttca 3240 gaagaaatca gttgctctcc tataaggacc attactatta acaaaacaga gaccttagaa 3300 ggaggcattg tttatttatt atatattttg taatgttatt accaatcttg ttatactctt 3360 tcttataccc tacaattgtt agcagaaatt attttaaatt aataagatcc tgcatgcttt 3420 tccttaaaaa aaaaaaaaag aaagaaagaa agatctctgt gtagagtgtc ctattctgag 3480 ccagtcctga gaggaaagga agtataatca atttgttatt aaccgatgaa agaattaagt 3540 gaaagataaa tctcaggaag cagagggaag taaacctaat ctctgactaa gaaagctaaa 3600 tactatgata actcattcat tccttctttt gttcaattac attatttaat cataagtcca 3660 tgacgtgcca ggcactcagg aaatagtaaa aattggacgt gcgatattct gcccttgtgt 3720 agcgcacact agagtgggaa agaaagtgca cttttaactg gacaactacc aacatgatga 3780 ggggaggaaa caggggctgg aaatgtccac ggactgtgcc gaaaaatgaa gcccataata 3840 tttgaaagtc agtttcttcc atcattttgt gtattaaggt tctttcttcc cctgttctcc 3900 gccttcctgc ttgtcatctt cactcatcag ctgaccatgt tgcctcttgt ggtgtaaact 3960 tgtaccagtt ttacggtccc tctggccagt tcacccatga atttgatgga gatgagcagt 4020 tctacgtgga cctggagaag aaggagactg cctggcggtg gcctgagttc agcaaatttg 4080 gaggttttga cccgcagggt gcactgagaa acatggctgt ggcaaaacac aacttgaaca 4140 tcatgattaa acgctacaac tctaccgctg ctaccaatgg tatgcgtcca ccattctgcc 4200 tctctttact taagctatcc cttcatacca gggttcatta ttttcttccc aagaggtccc 4260 cagatcttct tatggcaatt gctgaaattt tatcatctcc catctctaaa atcacatatt 4320 cccatgtaat acaagggtct ttccattatg cattcagcaa atccttctag gagaggtctc 4380 atcaacctcc tactttatta aacatgccca cagagagaag ggcacaggaa taaagcagag 4440 gcaatgtgtc attgctccca agcagaaggt aaataagacc tctttgacta tcaggtggtg 4500 aaatgctggt aggagggctc ttccaggatg taatgcagaa cttcagggca gagctattca 4560 cacttcacac cagtgctgtt tcctcaccac agaggttcct gaggtcacag tgttttccaa 4620 gtctcccgtg acactgggtc agcccaacac cctcatctgt cttgtggaca acatctttcc 4680 tcctgtggtc aacatcacat ggctgagcaa tgggcacgca gtcacagaag gtgtttctga 4740 gaccagcttc ctctccaaga gtgatcattc cttcttcaag atcagttacc tcaccttcct 4800 cccttctgct gatgagattt atgactgcaa ggtggagcac tggggcctga accagcctct 4860 tctgaaacac tggggtaagg atgagtttca tcattttttg attctttctt gtctgtcagg 4920 ttcagaactt cctgcctttt actcctatat ccaaaaactt gttttccaca cttcatgggt 4980 ttcttttctg tctcactttt ttttttgaaa gaataaagca aaaaaagcag agatttattg 5040 aaaatgaaag tacactctac aggatgggag tgggcctgcc acttcatggt tttctaatga 5100 tagacttcac tctcctccct aagctggggg ccttgagtct ttgtagagcc aaccctgtac 5160 cccatcccat cccacacaca tgcacatgag caaactctgc attctgacct caacaacttc 5220 acttccacag agcctgagat tccagcccct atgtcagagc tcacagagac tgtggtctgt 5280 gccctggggt tgtctgtggg cctcgtgggc attgtggtgg gcactgtctt catcatccaa 5340 ggcctgcgtt cagttggtgc ttccagacac caagggccct tgtgaatccc atcctggaag 5400 ggaaggtaag attgagactg gttacagttg aagcggcagt atgaaaggaa ggaaagtggg 5460 agggcgttgt ggacatgaat gtggtttaa 5489 //