Dbfetch
ID LR137094; SV 1; linear; genomic DNA; STD; HUM; 11468 BP. XX AC LR137094; XX PR Project:PRJEB30657; XX DT 23-JUL-2020 (Rel. 144, Created) DT 23-JUL-2020 (Rel. 144, Last updated, Version 1) XX DE Homo sapiens, HLA-DPB1 gene for MHC class II antigen, cell line DE DKMS-LSL_ID12941723_DPB1_1, allele HLA-DPB1*16:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RA Albrecht V.; RT ; RL Submitted (10-JAN-2019) to the INSDC. RL DKMS LIFE SCIENCE LAB, Research & Development, Tatzberg 47 , Saxony, 01307 RL Dresden, Germany XX DR MD5; 9adf073df89506d2561b939419ca95c5. XX FH Key Location/Qualifiers FH FT source 1..11468 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL_ID12941723_DPB1_1" FT /db_xref="taxon:9606" FT exon 1..466 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=1 FT CDS join(367..466,5003..5266,9217..9498,10046..10156, FT 10486..10505) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /protein_id="VEM23673.1" FT /translation="MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYLFQGRQECY FT AFNGTQRFLERYIYNREEFVRFDSDVGEFRAVTELGRPDEEYWNSQKDILEEERAVPDR FT MCRHNYELDEAVTLQRRVQPKVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQ FT EETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYICQVEHTSLDSPVTVEWKAQSDSA FT RSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRGSA" FT intron 467..5002 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=1 FT exon 5003..5266 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=2 FT intron 5267..9216 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=2 FT exon 9217..9498 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=3 FT intron 9499..10045 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=3 FT exon 10046..10156 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=4 FT intron 10157..10485 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=4 FT exon 10486..11468 FT /gene="HLA-DPB1" FT /allele="HLA-DPB1*16:new" FT /number=5 XX SQ Sequence 11468 BP; 3106 A; 2534 C; 2969 G; 2859 T; 0 other; taatccctgt agatgggcca gcagaatatt tgagatcacc ttcagagcaa agaaaacgca 60 taatctcgcc aaacatcatg acttatctga ctggttaaaa tgagtatcac tgtctttcct 120 ccgtcatctt aagtgcatca caggctttat attttcagac ctttcatact aactttctgc 180 ctagtgagca atgactcata caaagctcag tgtccattgg ttcttttctc agactctgtc 240 caatcccagg gtcacagaag actacttggg ttcatggtct ctaatatttc aaacaggagc 300 tccctttagc gagtccttct tttcctgact gcagctcttt tcattttgcc atccttttcc 360 agctccatga tggttctgca ggtttctgcg gccccccgga cagtggctct gacggcgtta 420 ctgatggtgc tgctcacatc tgtggtccag ggcagggcca ctccaggtaa gagccgaact 480 gccattcttg gagggtctgg ctcagggaac aattcctagg ggacgttatc tttaagggat 540 caaattctga gacaggctgc gggggctcct gccctaaggc agtgtcctct cttcccagct 600 agagaaagag gttcatcccc tataggatag cttgctaccc tactggccta ttctctctcc 660 aaggacatgg gtacagtaaa cagagagagg tgcccagtgg tcagtatgct tgtctttggg 720 gaaaatggga ccaagaggtc ctggataacc ttggacagac aaggtttgca gagagagaag 780 ttggcaagtg caggctcctg ggcgtgttca tgtctgcatc cagcctggag gggactcagg 840 cagagagccc taagctggag tgtccaggct ctgaggatca ctgaggattc agtgctcacg 900 aagaatgcct cttattcccc agggtggagc aggagcccac atcccttgga caattaagga 960 gagaagggag ggagggggat aggttttagc ccctgaaggc attctcatta aaggtacttc 1020 tcccagcctc cccagaactt ggttagggta ctagagtggg ttgcgacttg taggaagaat 1080 gagatgaggt tgtgtgggtg catgacaggg attgagtgta ggttatcaga cagccaagga 1140 agcagtaacc aagtgaaaaa tctcttcttc ctgctgcctc cctgtggctg gtgtaatatt 1200 atggcatcta tgatccattg tttttctctc aggatactct caggatattt ctttttatat 1260 atatatatac tttaagttct agggtacatg tgcacaacgt gcaggtttgt tacatatgta 1320 tacatgtgcc atgttggtgt gctgcaccca ttaactcgtc atttacatta ggtatatttc 1380 ctaatgctat ccctcccccc tccccccacc ccacaacagg ccccggtgta tgatgttccc 1440 cttcctgtgt ccatgtgttc tcattgttca gttcccacct atgagtgaga acatgtggtc 1500 tttggttttt tgtccttgca atagtttgct gtgaatgatg gtttccagct tcctccatgt 1560 ccctacaaag gacatgaact catccttttt tatggctgca cagtattcca tggtgtatat 1620 gtgtgcattt tcttaatcca gtctatcact gatggacagt tgggttggtt ccaagtcttt 1680 gctattgtga atagtgccgc tataaacata tgtgtgcatg tgtctttata gcagcatgat 1740 ttataatcct ttgggtatat acccagtaat gggatggctg ggtcaaatgg tatttctagt 1800 tctagatcct tgaggaattg ccacactgtc ttgagatacc atctcacacc agttaaaatg 1860 gcgatcatta aaaagtcagg aaacaacagg tgctggagag gatgtggaga aataggaaca 1920 cttttactct gttggtggga ctgtaaacta gttcaaccat tgtactctca ggacatttct 1980 agtccaaatt tacaccaaca ctctgagagg aaggactgca aagtaggtac cttagttttc 2040 cactgacttc cacttttcct gcttacaccc ttcctcctag acctctccac acccctccta 2100 ggacacacct aaaaggtact gacatcatgt cacctcctca tctttcaggg tagcaaggtt 2160 ggaatctcct gaatacagcc cctcaagccc taaaacctct tatctattac cttgggttca 2220 ttgtccagga aggggaggag aacttgaact tgtagtcaca gaagggtgct gagaactaac 2280 cagcaggacg gctcagccct gggaactgca gaggggtgag gctggggaga gaggaggctg 2340 gagcagcact ggtgacactg aacagtgtca ggaggaagtg acggatgcag cgcccccatc 2400 ccataggcag agctgtcatg tgggatgagg gacagtgttg ggagccacca aggaaaccca 2460 gaggtggggg agcagagagc agaagggagc atgtgatgct ggacagtgaa agggaggaca 2520 ggcaaaggct gggttgaggt ttgtaggggg aatgagatga ggcagtggag ccatgtgaca 2580 gggactgagg gtagattact ggagctccct gcgtagaatg aatgttcaat caaaatttgc 2640 tggagggaga gctggagcca taggggagtg ggtaaagtgg gcagggctga ttccacaatt 2700 ccctgcatgc tcccccaact ccacacacat ccccaacctc aaacagggca caagaccaaa 2760 gggctgagga gccaggctat agcttaaaga ggctggggga gaaaagcttg gctgagacaa 2820 cccataggga gctagaggtt tttaatatat cctattctga ataagagacg aattcattca 2880 gatcagtggt ttcaaaccgt gctctgggca actcaattgc taagggttcc acaaacagga 2940 taaagtttct tatatacaaa aaaaaatgaa ggtttcaaat tacaccataa aacccctcat 3000 tgcttatgtc tacttggcag gtaaaattcc atttcaaaag ttaaatgtac ttaaaaaatt 3060 acctaagact gggtaaatta aaaaaattaa atgttgcaaa gaaaaaattc aaaattctta 3120 ttcttgaatg aaaaacgttc tcttactggt gattgaggag gagaaacaaa gactaacaaa 3180 tgaaaatggg agaatccaca ctcagagtgg ggcaactgaa caggcagggg cggatggatg 3240 gcagaggagg aggaatctgg actcaaggag ctggggggct ctgggcctgg aattttaggg 3300 tctggggccc aaggcaccag gagaagaggc aggtcaggat atctgagtca agacctggga 3360 tcttgcctta gcaatgacac tggagactaa aggtggactc catggtgccc ttgagcccag 3420 ccctacccca tctccactat cctctgccac cagctgtgca acttctgcta ggggtgaggt 3480 taataaactg gagaagttaa tttgtggagc atgaaacaga tgagcagaac aatcacagca 3540 ccttaatttc cccagtgtgc ccaagaacag agcaggcctg aagatactca aacagaaaca 3600 aacatgtgcc gtgtcactga taattctgtg tagacacaca cctgccagac actgctcatg 3660 gcactcccta ggaagaacag catgtgggaa aggctgccaa aattgttcat gtaaaaatta 3720 catcaatgct gtcttcctcg gtgctgccta tgcagctggc agccatctct tcctccacat 3780 catggcctcc ctcagactcc tcatgaagga taagatcctc aaaaagagga ccaacaagtt 3840 catgaggcac caatcagact gaaatgtcaa aattaagcat aactggcgga aacccagagg 3900 tcttaacagt agggttcgta gaaggtccaa gggccagatc ttgatgccca acattgctta 3960 tgggagcaac aacaacaaca aaaaaaacat gctgcccagt ggcttccaga agtttctggt 4020 ccacagcctc aaggagctga aagtgctgct gatgtgcaac aaatcttact gtgctgagat 4080 cgctcacaaa atttcctcca gaactgcaaa gtcatcatgg aaagagtcac ccagccggcc 4140 atcagagtca ccaaccccag taccagggtg cacagctaag aaaatgagta gaaagttcat 4200 gtccacgttt tgtgtgtaaa taaaaccata aaaactgcca aaaaaaatta catcaatgcc 4260 tctaaaccca aaggactcta cccccacagg tccctggttg ttgtggtgat tttcattgtg 4320 taaaatactt tccacatctt ttgacaccaa gtctttctgc agccatgttt gaaaattaac 4380 tttcaggcta cagagtcttt cttataccaa agttgaagaa agttttaaga aatatatttc 4440 tacatctcct acatgcaaaa caacaggagc aagttgagga attctcaaga aactggtcga 4500 gaagagagag cgcttagcta tggaaaagag aaagaaggaa gggagggctt cctggaggag 4560 gtggcatttg aaccaggact gacatcagga tggaaatgtc agtcagggag ttaagtaggg 4620 ggagcagctc cgccctccac gtccccagct cctcccgccc ctgttttttc tcccagtgac 4680 cccacgtgaa acgtctccgc ctcctccagc caccagcaga agggactgcc ttcccctcag 4740 tgctcgcccc tccctagtga tcactcagtg cccctgagct cattcttttc agtaaattct 4800 ctctctgcgt ggtgagaaaa caggcctgga gaggctctgc gacccgctta ggaccacaga 4860 actcggtact aggaaaactc ctattttaaa atccagccct gggtgggaag atttgggaag 4920 aatcgttaat attgagagag agagggagaa agaggattag atgagagtgg cgcctccgct 4980 catgtccgcc ccctccccgc agagaattac cttttccagg gacggcagga atgctacgcg 5040 tttaatggga cacagcgctt cctggagaga tacatctaca accgggagga gttcgtgcgc 5100 ttcgacagcg acgtggggga gttccgggcg gtgacggagc tggggcggcc tgatgaggag 5160 tactggaaca gccagaagga catcctggag gaggagcggg cagtgccgga caggatgtgc 5220 agacacaact acgagctgga cgaggccgtg accctgcagc gccgaggtga gtgagggctt 5280 tgggccggcg gtcccagggc agccccgcgg gcccgtgccc agggcgcagg agcagccggg 5340 ttggcctaag ggaccttagt gccgggcgga aaggggactt tgggttgggg attcatgggg 5400 ggagcccatc tggagcttgt caggggagcg agcgcgggga cctggactgg gctgagcatg 5460 gagtgaggag gacgagagca gagagacccc cgggacttca tcaggcctgg cagctgactg 5520 catgtggggt gaaaaaagga agccacagga cagcgcacaa gggtatggtg tggagatgga 5580 ggtggagatg gcacagcagg ccacacagag aagaaaccta cagggaggta gctgggtttg 5640 aggtgcttga ggggcagatg ggtggtctga tgggcaggta gacagaaggg tctgcagccg 5700 gggaggagac tgagatacat gagaccatcc agggagaggg gacccagggg gaagagcaaa 5760 ggactggatc ctgggaactg gacagttgtg atttggccaa gacagaaaag cctgtgaaag 5820 agaccaaaaa aacccaagtg cagtgtgagg agaggcccgc agagaagagt cttggaagct 5880 gaggggaggt gacctcagca gcacagtgga cagcggtgcc agtgacttgg gaaggtcaga 5940 aaacagaaga tggaaagtgg gtttggaaac cagggagacc tggggagagc aggttggccg 6000 cagcggcagg agctggaatg ggagggggtg catgaggctg agtgtggcgc atcctcctcg 6060 gggctgagat ggattttact tgtcttgggt tccccacggc tgtcacaggg cagtgtctca 6120 gttcattcgt ctttttcctt caggaagtct gggtgtaaag ggatggagag aggtgaggtg 6180 tgtgcagtaa gaggatttct caaggatggg acaggaaggc cttggagctt tggcttcctc 6240 ctgtgaactt gtggggtggg gagcctggtg caccaacctg agggacttga gggagtagta 6300 tcaggatgtg ggattgagcc ctggaccttt tttctagaaa gaggaaaaaa atgaagggag 6360 gaggaggagg aagctgggga gatcacacct ttgattttct tgttcctgga aagtgaaagg 6420 aagttcacct gctatgagtg agaaggtgga cacactgggt ggggatgagg tgagtgacat 6480 gagcttagga aagttgctga ggtaattggt tgagagaggt gttcaaataa aagtaatgca 6540 attggcaaaa actgttacta agactttgta gaggcacaaa tcagtgacac ggcagcatct 6600 tctttcacag taatcaactg ccagattgca gggagccttg ataccagcct aaggagtgtg 6660 agtttctcct ctaggcccac aggtccccaa cctcacttct ccgaagactc tcctggagat 6720 catctgtgat gcgcagatac ccagactcac tgccccgaga ctcagattcc ctgggtaggg 6780 aggtcggggg atctctgctt gtaatcagct ccctagaggt tcccatgtag ccggataagt 6840 attgtcagaa cactgaagat ttttgaaaaa tgaaaaagcg aaggttggag atgtgtcttc 6900 agaagactac taagggtgct gggtagagga gggaccagag gcagggaaat gaggtaggaa 6960 actgctatta tttgtcaggg aaattgcaat caagaaatga gttagaacag ggaaaagaca 7020 gaggcagggg agaggtggaa gggggaggaa aggagtagtg acaattccag ggtgtatgct 7080 cacccaaatc tagaagtaat tgagcaaatg ttttctgggc attagagaag gcaactagaa 7140 caaacaggaa tccttgcctt ggtgaaatgt atttgaactg ggtcagaaat gaggccattg 7200 ggtatcaagc cttaactcca gcgccccctg gaggtcgctg atgtggctcc aggctgacct 7260 gctcctgtca aagaatattg agcaagatgc ctctcatgga atgttctggg accttaaaac 7320 agatacccaa gtattccccc tgatttcatg gttcccagaa gctctatggg gaagaaattg 7380 tacgtaattc acaactgaga tttagacata agttgaatag tgtaatggac gttgagttaa 7440 ccgaggtaat gaagtagtga gacacaggtg cccctgaaat aaactcacat tgagggaaga 7500 ggctgacaat gtggatcagt ctgtaaacaa ggcaaaaata caatagggag taagggttgt 7560 gtgtcagttc aagactgtac ttttacctgg cccagcgcca tgttggggta tttgtgttct 7620 ccaggaagta gaaaggaaag aactgagtga ttagggacct agaagactaa tttgagacat 7680 tcctcttgat gaactgttct ctagggtagt cctctgaaag agctgttctc tagtggatct 7740 ccctgaatga actgttctct aggagcactt gacccttttc tgtgtttgtt ttttgttttg 7800 tgtttgtgtt tgtttttgag acaggttctc gctctgtctc ccaggctgga gtgctgtggc 7860 gccatcatga ctcactgcag cctcaacctc ctgggctcaa gtgatcctcc tgcctcagcc 7920 tcccatgtag ctagaactac agatacatgt accaccatgt ctggctaatt tatttttctt 7980 tttagagatg ggttctcact atgttgccca ggctggtctc gaaaccctgg gctcaagtga 8040 tcctcacgcc tcagcctccc aaagtgctaa gattataggc atgaccacca tgcctggcct 8100 tttctgcctt ccgagaagga aaaaggtact ggtggcagag atccaaaaga aaagttgcca 8160 gtggcagtgt ggaaattgac ctgagaacaa cagaacaagc tggggcacaa atgcaaagat 8220 gcagagggag gcaacatctg gttatctgtg agaccttcat gggacctgaa gacacatcct 8280 tttggaaaag gatgggattt ctactactca agcatgtagg ggctcaggat attatgtaaa 8340 tatgaagatt ttgagttttt gtaagtgagg taaaaaaaat acctaggtta tttacagaat 8400 aagacatgtc aagctctctt cattttcttt gtattttcat gaaataaagg tattagatta 8460 acaggccacc ataatgccat tgtctgtata tcttaatttc aagatattat ttgagtaatt 8520 tttgcatcct ttgtatcaag atagaacttt gaaaagacag gtaatttcac agttgattaa 8580 atattctttg cccaaattac ttttggttaa aatttctcct atatgtgcta cagagtgcaa 8640 actctgtctc cctgccattc cgctatatac ttactaatta ttattttatt caagatcatg 8700 catgctctac ttgaaggtct atcttttcag tgctaccctt acccactagc ctaatcacat 8760 tatatctatt ttcaacatct aggaatcaat tacgtagtga acatgcctaa gaaataataa 8820 tctgggcaga tgcagtggct caggcctgta atcccagcac tttgagaggc tgagcgggtg 8880 gatcacttga ggtcaggagt tggtcaagtg ctcctagaga accagcctga ccaacatgga 8940 gaaaccttgt ctctactgat aatacaaaaa ttagccaggt gaggtggcag gcacctataa 9000 tcccagctat tcgggaggct gaggaaggag aattgcttga acccctgagg tggaggttgc 9060 agtgagccaa tattgcgcca ctgcattcca gacttggcaa cagagcgaca ctccacctca 9120 acaaaaagaa agaaagagcg agattacgtc tcaaaaaagg aaggaaggaa ggacaatctc 9180 aaatgctatt tcattatttt ccttccccac tcgtagtcca gcctaaggtg aacgtttccc 9240 cctccaagaa ggggcccctg cagcaccaca acctgcttgt ctgccacgtg acagatttct 9300 acccaggcag cattcaagtc cgatggttct tgaatggaca ggaggaaaca gctggggtcg 9360 tgtccaccaa cctgatccgt aatggagact ggaccttcca gatcctggtg atgctggaaa 9420 tgacccccca gcagggagac gtctacatct gccaagtgga gcacaccagc ctggacagtc 9480 ctgtcaccgt ggagtggagt gagtctctga tgaccgtcta gaccccacct ctgaagagca 9540 ggggactctc tggctctggg gtccactcat cttatcttct gcatctatac cctggggcca 9600 tgtccaaacc ccatctttct tctataccag ctcctgagca tagtttgaag ccagggcaat 9660 ggagacttcc tgaccttggc ttaggggttc ctgaagattc atagttctcc cccttgtcag 9720 agaatctagg gacactggct gatctcgaaa ccctcacaca caggaactga cctcacacat 9780 aggaacagtt ctcttctttc agcattttag cctcttctca ggcattttga gaggcaactt 9840 ctagaatcag catttgccac cttgttgagg tcacacccct gttccggaca tgagggtggc 9900 tctttctgaa tttcctctta gcaagctttt tcccctgcac tgtcttcatc ccgatattct 9960 gcatcacgct ccagaatctc agacaggaca tgagtaggga tgcagctggt ggaggtgaca 10020 ctaaacctgg gtctgtcctt cccagaggca cagtctgatt ctgcccggag taagacattg 10080 acgggagctg ggggcttcgt gctggggctc atcatctgtg gagtgggcat cttcatgcac 10140 aggaggagca agaaaggtga gaaagcctgc aaggtgagcg ggacttacct tcccctggca 10200 tattcacact tactccatga tgagggttca gacagaaaag aaatgtcaga aagctctaga 10260 gaccactgaa atcagatagt cggggaacaa acatgaccta tggcgagagg gggatcccag 10320 gctgggatct taatgcagcc agatgcatga ggtcccaggt gctcagactc ctgcggggca 10380 tccattgagt ggtggtcaat ggaatttggt gggatggaaa tgtttctcta actatctgag 10440 gtggtttcaa tggctgaata cataaccttt cctctttcat ttcagttcaa cgaggatctg 10500 cataaacagg taatattcct gctttgattt ccttgggggg tgggttacag gaggatatga 10560 ctcttttctg tgcattgtaa tactgaggct cctccaggaa gggaatctca ggcatgaacc 10620 cctctttcaa cctcggctct cgggtgagtg gggaaaaagc attgcacggc tccattgctg 10680 aaggaagcag agatcagttc tgttctttat cagcctaaga tgcagcctct caccataatt 10740 tttctctcct ggacttaaag gaaggaggcc agcaacctgg gataacttgt cctttacccc 10800 cacagggttc ctgacctcac cgaaaagact aatgtgcctt agaacaagca tttgctgtgt 10860 tttgttagca cctggttcca ggacagaccc tcagcttccc aagaggatac tgctgccaag 10920 aagttgctct gaagtcagtt tctatcgttc tgctctttga ttcaaagcac tgtttctctc 10980 actgggcctc caaccatgtt cccttcttct tagcaccaca aataatcaaa acccaacata 11040 agtgtttgtt ttcctttaaa aatatgcatc aaatcgtctc tcattacttt tctctgaggg 11100 ttttagtaaa cagtaggagt taataaagaa gttcattttg gtttacacgt aggaaagaag 11160 agaagcatga aagtggagat atgttaacta ttgtataatg tggcctgtta tacatgacac 11220 tcttctgaat tgactgtatt tcagtgagct gcccccaaat caagtttagt gccctcatcc 11280 atttatgtct cagaccgcta ttcttaacta ttcaatggtg agcagactgc aaatctgcct 11340 gataggaccc gtattcccac agcactaatt caacatatat cttactgaga gcatgtttta 11400 tcattaccat taagaagtta aatgaacatc agaatttaaa atcataaata taatctaata 11460 cactttaa 11468 //