Dbfetch
ID LN999671; SV 1; linear; genomic DNA; STD; HUM; 7231 BP. XX AC LN999671; XX DT 15-JAN-2016 (Rel. 127, Created) DT 21-JUL-2017 (Rel. 133, Last updated, Version 2) XX DE Homo sapiens, HLA-DQB1 gene for MHC class II antigen, cell line DE DKMS-LSL-DQB1-1008, allele HLA-DQB1*03:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-7231 RA Albrecht V.; RT ; RL Submitted (22-DEC-2015) to the INSDC. RL Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 43, Saxony, RL 01307 Dresden, GERMANY. XX RN [2] RX DOI; .1111/tan.13057. RX PUBMED; 28547825. RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A., RA Winkler S., Lange V., Bohme I., Schmidt A.H.; RT "Dual redundant sequencing strategy: Full-length gene characterisation of RT 1056 novel and confirmatory HLA alleles"; RL HLA. 90(2):79-87(2017). XX DR MD5; b73c54a41734b11c10734aff1d40b93d. DR IMGT/HLA; HLA-DQB1*03:10:02:02; HLA17695. XX FH Key Location/Qualifiers FH FT source 1..7231 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL-DQB1-1008" FT /db_xref="taxon:9606" FT exon 1..635 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=1 FT CDS join(527..635,2084..2353,4983..5264,5782..5892,7013..7026) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:A0A0U5KKF1" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A0U5KKF1" FT /protein_id="CUX91064.1" FT /translation="MSWKKALRIPGGLRAATVTLMLAMLSTPVAEGRDSPEDFVYQFKA FT MCYFTNGTERVRYVTRYIYNREEYARFDSDVGVYRAVTPLGPPDAEYWNSQKEVLERTR FT AELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW FT FRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQHGDVYTCHVEHPSLQNPITVEWRA FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH" FT intron 636..2083 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=1 FT exon 2084..2353 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=2 FT intron 2354..4982 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=2 FT exon 4983..5264 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=3 FT intron 5265..5781 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=3 FT exon 5782..5892 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=4 FT intron 5893..7012 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=4 FT exon 7013..7231 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=5 XX SQ Sequence 7231 BP; 1851 A; 1694 C; 1716 G; 1970 T; 0 other; ttctaagaac cttgcttttt tcaccaaaac ttaaggctcc tcaaagtgtg tctaagacaa 60 cagcagtaaa aatgtctatg acagcaattt tctctcccct gaaatatgat ccccacttaa 120 tttgccctat tgaaagaatc ccaagtatga aaacaactgg tttttaatca atattacaaa 180 gatgtttact gttgaatcgc attttttttg gcttcttaaa atcccttagg cattcagtct 240 tcagctcttc cataattgag aggaaatttt cacctcaaat gttcatccag tgcaattgga 300 agacgtcaca gtgccaggca ctggattgag aaccttcaca aaaaaaaatc tgcccagaga 360 cagatgaggt ccttcagctc cagtgctgat tggttccttt ccaagggacc atccaatcct 420 accacgcatg gaaacatcca caggttttta ttctttctgc caggtacatc agatccatca 480 ggtccgagct gtgttgacta ccactacttt tcccttcgtc tcaattatgt cttggaaaaa 540 ggctttgcgg atccccggag gccttcgggc agcaactgtt accttgatgc tggcgatgct 600 gagcacccca gtggctgagg gcagagactc tcccggtaag tgcagggcag ctgctctcca 660 gagccgccac tctgggaaca gactctcctt gggctggggt atggggatgg tgatctcgat 720 tatctcagac acaatcttta tcaatatttc ctctgttttg ggaaagagag ctatgttgca 780 ttcccattta tcttttaatg atgaggtgag gacaatccaa tcccatccta cagacttaag 840 cctggaagag gagagaggag agaaaagagg agacaaagtg ttcatttact accagtgata 900 ggacaaagtg agcatggggt tatttttgaa gatatgaatt tctccaaaga cacagcatga 960 tttgtcattt aggcgtgccc caagactgcc tggactaact attatgagat cctgcactgg 1020 gaaatgtaag gcagcaatgg tgtctgtagt ccccgtattt ggggaaaagg tgtctgtatt 1080 cctgactcag tggagcgttt gtggaggcaa aatcttggta ctgagggaag ctgactggct 1140 gaccacagac agggagtctt caggtttcac tgatttatgg gcaaatggtg acctgagtgg 1200 gattcagaga cccgagttga tggtggacta aatttagtag aaaggaggat gtaaagaaga 1260 gaaattatac atactgtgaa accactcatt tcagacacag aacaatactt tacataaatt 1320 ctctctcact ccttctaaca tcctgtgtgt agatatcatg attttctttt acacaattat 1380 acttgtgaca tggatattct gttacgtaac ctgcccgagc tggtgactgc cacagtttaa 1440 tgggattcta gtttatcaaa ttcaaaagct tgtgctcttt cagtgaataa acgtttcttt 1500 ctaggactca gagatctagg actcccttct ttctaacaca gaagtgagtg aacctcacag 1560 ggcacttggg agggtaaatc caggcatggg aaggaaggta ttttacccag ggaccaagag 1620 aataggcata tcaaaagagg acaggtttaa ttcctggacc tgtctcgtca ttcccttgaa 1680 ctctcaggtt tatgtggata actttatctc tgaggtaccc aggagctcca tggaaaatgg 1740 gatttcatgc gagaacgccc tgatccctct aagtgcagag gtccatgcaa aatcaacccg 1800 actgcctctt cgcttggttc acaggcccag ccagacaggg acagggcttt cctccctttc 1860 ctgcctgtag gaaggcggat tcccgaagac ccccgagagg gcgggcaggg ctgggcagag 1920 cccccgggag gatcccaggt ctgcagcgcg aggcacgggc cggcgggaac tggaggtcgc 1980 gcgggcggtt ccacagctcc gggccgggtc agggcggcgg ctgcggggtg gccgggctgg 2040 ggccgggccg gggccggact gaccggccgg tgattccccg cagaggattt cgtgtaccag 2100 tttaaggcca tgtgctactt caccaacggg acggagcgcg tgcgttatgt gaccagatac 2160 atctataacc gagaggagta cgcacgcttc gacagcgacg tgggggtgta ccgggcggtg 2220 acgccgctgg ggccgcctga cgccgagtac tggaacagcc agaaggaagt cctggagagg 2280 acccgggcgg agttggacac ggtgtgcaga cacaactacc agttggagct ccgcacgacc 2340 ttgcagcggc gaggtgagcg tcgtcgcccc gctgcgaggc ccactcttgg ccggggcccc 2400 gagtctctgc gctaggaggg acgagggggg cgaagcctct ggaacctgag ccgcgttcgt 2460 tccaccccag gggacaggag ttggcggcgt gggtggtggg gcaggtgcat aggaggggca 2520 gggacctagg ggcagagcag gggtacaggt agagttggtc aaactgccta gttttgcccc 2580 agccttcccg tccgtcagcc tcgccctctg ctgtgcacgt tctcgcctcg tgccttatgc 2640 gtttgcctcc tcgtgccttg cctttgctaa gcagtcctct ctgcccccaa tttctgccct 2700 cttcccctgc ccgcccgccc cgctagcact gccccaccca gcaaggtcca cgtgcactgc 2760 tcgcgccgca ggaagcttca ggcttggcct ggtggagtta gggctgctcc acaactgtgc 2820 gcagggcatc cagcaattac agttgtgaaa taagatattt tgacttttgg cttcaaatta 2880 ttattcatcg taattccgtt ttcttaaatg gctctcattc atggcggagc tctttgaggt 2940 gagagtgttt taatcatttt atggccggta cctgacacat tgactggcat gtggtataag 3000 ctcaataatc ttctgttaaa ttaatgaata aatgtgctca gctgccaatc cacttaggct 3060 caagaaaaac cagaggtaaa cagaacctta aaaatggact tttattaatt attttctatc 3120 attttgctta attctttaaa gtaaactctt attgacttgg atctaaatag tttgtgaata 3180 caaagtctga ggaaaaaagt gtttgctaaa aataaaaaca acacttgaat gatgtttgta 3240 aggcagtttt aatttcttag aaaagctgaa caaatggcac aatgcaaaga gcagaagttt 3300 tggaataaat agattgaagc cattaaatta ttggataaaa atagtttcag gttgcttttg 3360 gcctaggttc tcccctcccc ccatcactat ccacttcagg aataaacatt ctgaaagtta 3420 attttaccca tatagtgagc acttatttct aagttgcctt atcaaatacc atctatgtta 3480 tgtcatttaa tctcgcagtt gcctgtgcat tagagattag catcaccact ttatatatcc 3540 taatattagt acatgataaa cactttaagt aatcagccca caagtactca ccaagacctt 3600 aagcctccca aagtacacaa cattcttacg ttcctcacta cacatctgta gagtcaaagg 3660 gacataaagc cttgttaaag ccagttttga ccagaagcag caatggtctc ttcctgtttg 3720 atctccatgt taatgggaca aaatgatact ttcaaggcat tgaaaattta tgattaatca 3780 atcaaattta tgattaatca atccctagtc tgactccagt gagattcaca aaactttcag 3840 tttactttat actcccttgc cttcttttga ctcacatcat agtgccagca agtacttata 3900 tttttgctat ttcagttcta tttccataaa atttatttta tcatcttttc tcataaattt 3960 gtgccctcta tttttactcc caatctgtgt aagatgaaca aatcttataa gaccacatag 4020 ctgactgtga tttcaggtgg actccaggaa ggagaaccaa agaaaacttt cagtcttttt 4080 aagatgaaca aatcttgtaa gtccccacat agctgactgt gatttcaggt ggactccagg 4140 aaggagaacc aaagaaaagt tcaagtccaa gcagaaaccg tgattccttc cggatgatgg 4200 ctcatgagtg ccatttaatt ggggtgccac ctgctgtcct cagcaaatcc cagctatatg 4260 tatatgttcg cattacaggc tcattaacct aggctgacct ctgcaaggat ctcagaatat 4320 tttctacaga gaacatacat gataatatct gattttagga caaaaaagta attctcaata 4380 gcaagggaat ggagtagggt agacagctag taattaaact cacttgtgtg ttaaaaataa 4440 attaaggaaa aaagaaaatg agagaacata ttactaaata aagaaagcat acattaaata 4500 tttactatag ttttacacta agagaataaa ggaaatgcaa taaagtggcc tgaaaggtaa 4560 aggatgagat gtgtaaaaga ggcggggaaa gatgtgtcat ttttttttta ctatgagcag 4620 caatctgaga agataaagga atcgagttat gggcagacat gatgtttgat cagtgttatt 4680 tgttttcaag gcctgcctac ttttttttca aatattacaa acttttgaag tcacattctt 4740 tttgtttttt gctgtctgtt actagatcgc acattctgta aaggcaggga ccatggtatg 4800 ttgtttatct ttggattctc agtgattgtc atatttatgt ttgttgaatg aatcttaatc 4860 caagacttgg gctccaggta tctttccatt ctggttccaa ggagggacct tcctcacagc 4920 aggcgtgctg tgtggtctca catctcactc ctatatcttt ccctgtctgt tactgccctc 4980 agtggagccc acagtgacca tctccccatc caggacagag gccctcaacc accacaacct 5040 gctggtctgc tcagtgacag atttctatcc agcccagatc aaagtccggt ggtttcggaa 5100 tgaccaggag gagacaaccg gcgttgtgtc cacccccctt attaggaacg gtgactggac 5160 cttccagatc ctggtgatgc tggaaatgac tccccagcat ggagacgtct acacctgcca 5220 cgtggagcac cccagcctcc agaaccccat caccgtggag tggcgtaagg ggatattgag 5280 tttctgttac tatgggcccc acaagacaaa gggcagagct cattctgacc catcccttcc 5340 catctcttat ccctgatgtc actactgagc tgggaatcac aggagactag agcacttctt 5400 cctccatggc aagtgcatca gaagaatcct gatctcatca cctttccaga tgctagggaa 5460 attactctac atactgtttc tctggatccc agtcctgata gctcggaggg actgatcatt 5520 agggctggtg actgggatct tagggtttaa ggttatggat gagctcctga ggagtggaga 5580 tctgcttctc cactctctca cctactcact gtacccaagg acctattggc tggcctttcc 5640 cctcccttag gggtggtctg aatggaggac tagtttcctt tgacgccttc acctcctgaa 5700 tctcagactg gacttcagct cctcagcagg gatgctatgg ggtgtgggga caaacactga 5760 cactcaggct ctgcttctta ggggctcagt ctgaatctgc ccagagcaag atgctgagtg 5820 gcattggagg cttcgtgctg gggctcatct tcctcgggct gggccttatt atccatcaca 5880 ggagtcagaa aggtgaggaa ccccaaggga aaaggggaag atgggctgtg acccagaccc 5940 tctgttcaga gaggtcctgt ctctagatgt ggctctttcc tcctgacccc gagaggaaga 6000 aagctgagct ggaggtggga ggagacagga caagattgga ggaggcattg gaatctgatt 6060 ttactagttg aaaggtagcc ctgtcacaca gctcactgat agagcttatt gaaggacatc 6120 cttacctttc atcattgtct cattggctcc tttccaaaag cttcctccat taagagggtc 6180 agagccttgg cctccttgcc ttctagtgac aatttccttt gttttagggg attttaaatt 6240 agggtgctta aggccttgaa ggacatgggt gggaagagaa tataactcta attaagtcac 6300 atgtgtcatt ttccattggg gtgagagagt ggctgtttgt gtaatgagac ctttctctgc 6360 ataacttcct tttgtaagac ctcaagggcc tccaccagca ggtaatattt cagccgtgat 6420 ccagtgtggg gagggcacag atgtaagagg gaagagcatg agctgagtgt acctgaccac 6480 agtggtctcc gttcatggta tatttgctgc tatgaggatc aagacttagg ggcgaagttt 6540 gccagtttct aggaatctcc agaggctgtt ccccagaacc aagccttaac tttggtggca 6600 tcttcctgtg aaatgtgaag ccagaaccac agcttaaatg ttagacacta ggatgatgcc 6660 cactttgtgc cacatgttgg tggctactgc ctgtaggcat tttccagtga ctgaaagagg 6720 ctgctagtgg tagggatgag gtatcatcca atttcctaaa aagaccgaac ccttcatatt 6780 ccccagaaga gtaacagctg ttcccccacc tccctcacat ctgcatcaag ctgaagttct 6840 gtgtcttcat gagctgattt cacctttgca cagatcttgg gggaggtgat gacaatacac 6900 tctggacctc agctttgtct gtctgaagct gcagggggcc cctgaggggt gggggagatg 6960 gcaggcccac cagcgtaccc tgtgctgatc atccctcttc tctcttctcc agggctcctg 7020 cactgactcc tgagactatt ttaactggga ttggttatca cttttctgta acgcctgctt 7080 gtccctgccc agaattccca actgcctgtg tcagcctgtc cccctgagat cagagtccta 7140 cagtggctgt cacgcagcca ccaggtcatc tcctttcatc cccaccccaa ggcgctggct 7200 gtgactctgc ttcctgcact gacccagagc c 7231 //