Dbfetch

ID   LN994613; SV 2; linear; genomic DNA; STD; HUM; 3501 BP.
XX
AC   LN994613;
XX
DT   09-DEC-2015 (Rel. 127, Created)
DT   02-SEP-2017 (Rel. 134, Last updated, Version 3)
XX
DE   Homo sapiens, HLA-A pseudogene, null allele HLA-A*03:new
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-3501
RA   Albrecht V.;
RT   ;
RL   Submitted (27-NOV-2015) to the INSDC.
RL   Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 43, Saxony,
RL   01307 Dresden, GERMANY.
XX
RN   [2]
RX   DOI; .1111/tan.13057.
RX   PUBMED; 28547825.
RA   Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A.,
RA   Winkler S., Lange V., Bohme I., Schmidt A.H.;
RT   "Dual redundant sequencing strategy: Full-length gene characterisation of
RT   1056 novel and confirmatory HLA alleles";
RL   HLA. 90(2):79-87(2017).
XX
DR   MD5; e0bfae53fe0749cc458a8aea1c5201dc.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3501
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /cell_line="DKMS-LSL-A-712"
FT                   /db_xref="taxon:9606"
FT   exon            1..373
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=1
FT   CDS             join(301..373,504..772,1014..1289,1868..2143,2246..2362,
FT                   2805..2837,2980..3027,3197..3201)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /note="MHC class I antigen null allele"
FT                   /db_xref="PSEUDO:CUV66665.1"
FT                   /pseudogene="allelic"
FT   intron          374..503
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=1
FT   exon            504..772
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=2
FT   intron          773..1013
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=2
FT   exon            1014..1289
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=3
FT   intron          1290..1867
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=3
FT   exon            1868..2143
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=4
FT   intron          2144..2245
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=4
FT   exon            2246..2362
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=5
FT   intron          2363..2804
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=5
FT   exon            2805..2837
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=6
FT   intron          2838..2979
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=6
FT   exon            2980..3027
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=7
FT   intron          3028..3196
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=7
FT   exon            3197..3501
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03:new"
FT                   /number=8
XX
SQ   Sequence 3501 BP; 666 A; 1014 C; 1067 G; 754 T; 0 other;
     caggagcaga ggggtcaggg cgaagtccca gggccccagg cgtggctctc agagtctcag        60
     gccccgaagg cggtgtatgg attggggagt cccagccttg gggattcccc aactccgcag       120
     tttcttttct ccctctccca acctacgtag ggtccttcat cctggatact cacgacgcgg       180
     acccagttct cactcccatt gggtgtcggg tttccagaga agccaatcag tgtcgtcgcg       240
     gtcgctgttc taaagcccgc acgcacccac cgggactcag attctcccca gacgccgagg       300
     atggccgtca tggcgccccg aaccctcctc ctgctactct cgggggccct ggccctgacc       360
     cagacctggg cgggtgagtg cggggtcggg agggaaaccg cctctgcggg gagaagcaag       420
     gggccctcct ggcgggggcg caggaccggg ggagccgcgc cgggacgagg gtcgggcagg       480
     tctcagccac tgctcgcccc caggctccca ctccatgagg tatttcttca catccgtgtc       540
     ccggcccggc cgcggggagc cccgcttcat cgccgtgggc tacgtggacg acacgcagtt       600
     cgtgcggttc gacagcgacg ccgcgagcca gagatggagc cgcgggcgcc gtggatagag       660
     caggaggggc cggagtattg ggaccaggag acacggaatg tgaaggccca gtcacagact       720
     gaccgagtgg acctggggac cctgcgcggc tactacaacc agagcgaggc cggtgagtga       780
     ccccggccgg gggcgcaggt caggacccct catcccccac ggacgggcca ggtcgcccac       840
     agtctccggg tccgagatcc accccgaagc cgcgggaccc cgagaccctt gccccgggag       900
     aggcccaggc gcctttaccc ggtttcattt tcagtttagg ccaaaaatcc ccccgggttg       960
     gtcggggctg ggcggggctc gggggactgg gctgaccgcg gggtcggggc caggttctca      1020
     caccatccag ataatgtatg gctgcgacgt ggggtcggac gggcgcttcc tccgcgggta      1080
     ccggcaggac gcctacgacg gcaaggatta catcgccctg aacgaggacc tgcgctcttg      1140
     gaccgcggcg gacatggcgg ctcagatcac caagcgcaag tgggaggcgg cccatgaggc      1200
     ggagcagttg agagcctacc tggatggcac gtgcgtggag tggctccgca gatacctgga      1260
     gaacgggaag gagacgctgc agcgcacggg taccaggggc cacggggcgc ctccctgatc      1320
     gcctgtagat ctcccgggct ggcctcccac aaggagggga gacaattggg accaacacta      1380
     gaatatcacc ctccctctgg tcctgaggga gaggaatcct cctgggttcc agatcctgta      1440
     ccagagagtg actctgaggt tccgccctgc tctctgacac aattaaggga taaaatctct      1500
     gaaggagtga cgggaagacg atccctcgaa tactgatgag tggttccctt tgacaccggc      1560
     agcagccttg ggcccgtgac ttttcctctc aggccttgtt ctctgcttca cactcaatgt      1620
     gtgtgggggt ctgagtccag cacttctgag tccctcagcc tccactcagg tcaggaccag      1680
     aagtcgctgt tcccttctca gggaatagaa gattatccca ggtgcctgtg tccaggctgg      1740
     tgtctgggtt ctgtgctctc ttccccatcc cgggtgtcct gtccattctc aagatggcca      1800
     catgcgtgct ggtggagtgt cccatgacag atgcaaaatg cctgaatttt ctgactcttc      1860
     ccgtcagacc cccccaagac acatatgacc caccacccca tctctgacca tgaggccacc      1920
     ctgaggtgct gggccctggg cttctaccct gcggagatca cactgacctg gcagcgggat      1980
     ggggaggacc agacccagga cacggagctc gtggagacca ggcctgcagg ggatggaacc      2040
     ttccagaagt gggcggctgt ggtggtgcct tctggagagg agcagagata cacctgccat      2100
     gtgcagcatg agggtctgcc caagcccctc accctgagat ggggtaagga gggagatggg      2160
     ggtgtcatgt ctcttaggga aagcaggagc ctctctggag acctttagca gggtcagggc      2220
     ccctcacctt cccctctttt cccagagctg tcttcccagc ccaccatccc catcgtgggc      2280
     atcattgctg gcctggttct ccttggagct gtgatcactg gagctgtggt cgctgccgtg      2340
     atgtggagga ggaagagctc aggtggagaa ggggtgaagg gtggggtctg agatttcttg      2400
     tctcactgag ggttccaagc cccagctaga aatgtgccct gtctcattac tgggaagcac      2460
     cgtccacaat catgggccta cccagtctgg gccctgtgtg ccagcactta ctcttttgta      2520
     aagcacctgt taaaatgaag gacagattta tcaccttgat tacggcggtg atgggacctg      2580
     atcccagcag tcacaagtca caggggaagg tccctgagga cagacctcag gagggctatt      2640
     ggtccaggac ccacacctgc tttcttcatg tttcctgatc ccgccctggg tctgcagtca      2700
     cacatttctg gaaacttctc tggggtccaa gactaggagg ttcctctagg accttaaggc      2760
     cctggctcct ttctggtatc tcacaggaca ttttcttctc acagatagaa aaggagggag      2820
     ttacactcag gctgcaagta agtatgaagg aggctgatgc ctgaggtcct tgggatattg      2880
     tgtttgggag cccatggggg agcccaccca cctcacaatt cctcctctag ccacatcttc      2940
     tgtgggatct gaccaggttc tgtttttgtt ctaccccagg cagtgacagt gcccagggct      3000
     ctgatgtgtc cctcacagct tgtaaaggtg agagcttgga ggacctaatg tgtgttgggt      3060
     gttgggcgga acagtggaca cagctgtgct atggggtttc tttgcattgg atgtattgag      3120
     catgcgatgg gctgtttaag gtgtgacccc tcactgtgat ggatatgaat ttgttcatga      3180
     atattttttt ctatagtgtg agacagctgc cttgtgtggg actgagaggc aagagttgtt      3240
     cctgcccttc cctttgtgac ttgaagaacc ctgactttgt ttctgcaaag gcacctgcat      3300
     gtgtctgtgt tcgtgtaggc ataatgtgag gaggtgggga gaccacccca cccccatgtc      3360
     caccatgacc ctcttcccac gctgacctgt gctccctccc caatcatctt tcctgttcca      3420
     gagaggtggg gctgaggtgt ctccatctct gtctcaactt catggtgcac tgagctgtaa      3480
     cttcttcctt ccctattaaa a                                                3501
//