Dbfetch

ID   LN912978; SV 1; linear; genomic DNA; STD; HUM; 3349 BP.
XX
AC   LN912978;
XX
DT   29-NOV-2015 (Rel. 127, Created)
DT   21-JUL-2017 (Rel. 133, Last updated, Version 2)
XX
DE   Homo sapiens HLA-C gene for MHC class I antigen, cell line DKMS-LSL-C-710,
DE   allele HLA-C*12:new
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-3349
RA   Albrecht V.;
RT   ;
RL   Submitted (24-NOV-2015) to the INSDC.
RL   Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 43, Saxony,
RL   01307 Dresden, GERMANY.
XX
RN   [2]
RX   DOI; .1111/tan.13057.
RX   PUBMED; 28547825.
RA   Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A.,
RA   Winkler S., Lange V., Bohme I., Schmidt A.H.;
RT   "Dual redundant sequencing strategy: Full-length gene characterisation of
RT   1056 novel and confirmatory HLA alleles";
RL   HLA. 90(2):79-87(2017).
XX
DR   MD5; 98ac85e510fb3e9703abb7487a9e6f6c.
DR   IMGT/HLA; HLA-C*12:201; HLA16173.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3349
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /cell_line="DKMS-LSL-C-710"
FT                   /db_xref="taxon:9606"
FT   exon            1..356
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=1
FT   CDS             join(284..356,487..756,1003..1278,1866..2141,2263..2382,
FT                   2822..2854,2962..3009,3174..3178)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /product="MHC class I antigen"
FT                   /function="antigen presenting molecule"
FT                   /db_xref="GOA:A0A0S4T3S8"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR010579"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:A0A0S4T3S8"
FT                   /protein_id="CUU97305.1"
FT                   /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR
FT                   FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRN
FT                   LRGYYNQSEAGSHTLQWMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA
FT                   AQITQRKWEAAREAEQWRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE
FT                   ATLRCWALGFYPAEITLTWQPDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT                   TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG
FT                   KGGSCSQAASSNSAQGSDESLIACKA"
FT   intron          357..486
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=1
FT   exon            487..756
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=2
FT   intron          757..1002
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=2
FT   exon            1003..1278
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=3
FT   intron          1279..1865
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=3
FT   exon            1866..2141
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=4
FT   intron          2142..2262
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=4
FT   exon            2263..2382
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=5
FT   intron          2383..2821
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=5
FT   exon            2822..2854
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=6
FT   intron          2855..2961
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=6
FT   exon            2962..3009
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=7
FT   intron          3010..3173
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=7
FT   exon            3174..3349
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*12:new"
FT                   /number=8
XX
SQ   Sequence 3349 BP; 621 A; 985 C; 1044 G; 699 T; 0 other;
     gatcaggacg aagtcccagg tcccgggcgg ggctctcagg gtctcaggct ccaagggccg        60
     tgtctgcact ggggaggcgc cgcgttgagg attctccact cccctgagtt tcacttcttc       120
     tcccaacctg cgtcgggtcc ttcttcctga atactcatga cgcgtcccca attcccactc       180
     ccattgggtg tcgggttcta gagaagccaa tcagcgtctc cgcagtcccg gttctaaagt       240
     ccccagtcac ccacccggac tcggattctc cccagacgcc gagatgcggg tcatggcgcc       300
     ccgaaccctc atcctgctgc tctcgggagc cctggccctg accgagacct gggcctgtga       360
     gtgcggggtt gggagggaaa cggcctctgc ggagaggagc gaggggcccg cccggcgagg       420
     gcgcaggacc cggggagccg cgcagggagg agggtcgggc gggtctcagc ccctcctcgc       480
     ccccaggctc ccactccatg aggtatttct acaccgccgt gtcccggccc ggccgcggag       540
     agccccgctt catcgcagtg ggctacgtgg acgacacgca gttcgtgcgg ttcgacagcg       600
     acgccgcgag tccaagaggg gagccgcggg cgccgtgggt ggagcaggag gggccggagt       660
     attgggaccg ggagacacag aagtacaagc gccaggcaca ggctgaccga gtgagcctgc       720
     ggaacctgcg cggctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc       780
     aggtcacgac ccctccccat cccccacgga cggcccgggt cgccccgagt ctcccggtct       840
     gagatccacc ccgaggctgc ggaacccgcc cagaccctcg accggagaga gccccagtca       900
     cctttacccg gtttcatttt cagtttaggc caaaatcccc gcgggttggt cggggctggg       960
     gcggggctcg ggggacgggg ctgaccacgg gggcggggcc agggtctcac accctccagt      1020
     ggatgtatgg ctgcgacctg gggcccgacg ggcgcctcct ccgcgggtat gaccagtccg      1080
     cctacgacgg caaggattac atcgccctga acgaggacct gcgctcctgg actgccgcgg      1140
     acacggcggc tcagatcacc cagcgcaagt gggaggcggc ccgtgaggcg gagcagtgga      1200
     gagcctacct ggagggcacg tgcgtggagt ggctccgcag atacctggag aacgggaagg      1260
     agacgctgca gcgcgcgggt accaggggca gtggggagcc ttccccatct cctgtagatc      1320
     tcccgggatg gcctcccacg aggaggggag gaaaatggga tcagcgctag aatatcgccc      1380
     tcccttgaat ggagaatggg atgagttttc ctgagtttcc tctgagggcc ccctctgctc      1440
     tctaggacaa ttaagggatg aagtccttga ggaaatggag gggaagacag tccctggaat      1500
     actgatcagg ggtccccttt gaccactttg accactgcag cagctgtggt caggctgctg      1560
     acctttctct caggccttgt tctctgcctc acgctcaatg tgtttaaagg tttgattcca      1620
     gcttttctga gtccttcggc ctccactcag gtcaggacca gaagtcgctg ttcctccctc      1680
     agagactaga actttccaat gaataggaga ttatcccagg tgcctgtgtc caggctggcg      1740
     tctgggttct gtgccccctt ccccacccca ggtgtcctgt ccattctcag gatggtcaca      1800
     tgggcgctgt tggagtgtcg caagagagat acaaagtgtc tgaattttct gactcttccc      1860
     gtcagaacac ccaaagacac acgtgaccca ccatcccgtc tctgaccatg aggccaccct      1920
     gaggtgctgg gccctgggct tctaccctgc ggagatcaca ctgacctggc agccggatgg      1980
     cgaggaccaa actcaggaca ccgagcttgt ggagaccagg ccagcaggag atggaacctt      2040
     ccagaagtgg gcagctgtgg tggtgccttc tggagaagag cagagataca cgtgccatgt      2100
     gcagcacgag gggctgccag agcccctcac cctgagatgg ggtaaggagg gggatgaggg      2160
     gtcatgtgtc ttctcaggga aagcagaagt cctggagccc ttcagccggg tcagggctga      2220
     ggcttggggg tcagggcccc tcaccttccc ctcctttccc agagccatct tcccagccca      2280
     ccatccccat cgtgggcatc gttgctggcc tggctgtcct ggctgtccta gctgtcctag      2340
     gagctgtgat ggctgttgtg atgtgtagga ggaagagctc aggtagggaa ggggtgagga      2400
     gtggggtctg ggttttcttg tcccactggg agtttcaagc cccaggtaga agtgtgcccc      2460
     acctcgttac tggaagcacc atccacacat gggccatccc agcctgggac cctgtgtgct      2520
     agcacttact ctgttgtgaa gcacatgaca atgaaggaca gatgtatcac cttgatgatt      2580
     atggtgttgg ggtccttgat tccagcattc atgagtcagg ggaaggtccc tgctaaggac      2640
     agaccttagg agggcagttg ctccagaacc cacagctgct ttccccgtgt ttcctgatcc      2700
     tgccctgggt ctgcagtcat agttctggaa acttctcttg ggtccaagac taggaggttc      2760
     ccctaagatc gcatggccct gcctcctccc tgtcccctca cagggcattt tcttcccaca      2820
     ggtggaaaag gagggagctg ctctcaggct gcgtgtaagt gatggcggtg ggcgtgtgga      2880
     ggagctcacc caccccataa ttcctcttgt cccacatctc ctgcgggctc tgaccaggtc      2940
     tttttttttg ttctacccca gccagcaaca gtgcccaggg ctctgatgag tctctcatcg      3000
     cttgtaaagg tgagattctg gggagctgaa gtggtctggg gtggggcaga gggaaaaggc      3060
     ctaggtaatg gggatccttt gattgggacg tttcgaatgt gtggtgagct gttcagagtg      3120
     tcatcactta ccatgactga cctgaatttg ttcatgacta ttgtgttctg tagcctgaga      3180
     cagctgcctg tgtgggactg agatgcagga tttcttcaca cctctccttt gtgacttcaa      3240
     gagcctctgg catctctttc tgcaaaggca tctgaatgtg tctgcgttcc tgttagcata      3300
     atgtgaggag gtggagagac agcccacccc cgtgtccacc gtgacccct                  3349
//