Dbfetch
ID LN912907; SV 1; linear; genomic DNA; STD; HUM; 3349 BP.
XX
AC LN912907;
XX
DT 29-NOV-2015 (Rel. 127, Created)
DT 21-JUL-2017 (Rel. 133, Last updated, Version 2)
XX
DE Homo sapiens HLA-C gene for MHC class I antigen, cell line DKMS-LSL-C-640,
DE allele HLA-C*15:new
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-3349
RA Albrecht V.;
RT ;
RL Submitted (24-NOV-2015) to the INSDC.
RL Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 43, Saxony,
RL 01307 Dresden, GERMANY.
XX
RN [2]
RX DOI; .1111/tan.13057.
RX PUBMED; 28547825.
RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A.,
RA Winkler S., Lange V., Bohme I., Schmidt A.H.;
RT "Dual redundant sequencing strategy: Full-length gene characterisation of
RT 1056 novel and confirmatory HLA alleles";
RL HLA. 90(2):79-87(2017).
XX
DR MD5; c4a39f7440867c05fb23ef89bb50f382.
DR IMGT/HLA; HLA-C*15:02:27; HLA15419.
XX
FH Key Location/Qualifiers
FH
FT source 1..3349
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /cell_line="DKMS-LSL-C-640"
FT /db_xref="taxon:9606"
FT exon 1..356
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=1
FT CDS join(284..356,487..756,1003..1278,1866..2141,2263..2382,
FT 2822..2854,2962..3009,3174..3178)
FT /codon_start=1
FT /transl_table=1
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /product="MHC class I antigen"
FT /function="antigen presenting molecule"
FT /db_xref="GOA:C1K0Y5"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:C1K0Y5"
FT /protein_id="CUU97234.1"
FT /translation="MRVMAPRTLLLLLSGALALTETWACSHSMRYFYTAVSRPGRGEPH
FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQTDRVNLRK
FT LRGYYNQSEAGSHIIQRMYGCDLGPDGRLLRGHDQLAYDGKDYIALNEDLRSWTAADTA
FT AQITQRKWEAAREAEQLRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG
FT KGGSCSQAASSNSAQGSDESLIACKA"
FT intron 357..486
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=1
FT exon 487..756
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=2
FT intron 757..1002
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=2
FT exon 1003..1278
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=3
FT intron 1279..1865
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=3
FT exon 1866..2141
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=4
FT intron 2142..2262
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=4
FT exon 2263..2382
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=5
FT intron 2383..2821
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=5
FT exon 2822..2854
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=6
FT intron 2855..2961
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=6
FT exon 2962..3009
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=7
FT intron 3010..3173
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=7
FT exon 3174..3349
FT /gene="HLA-C"
FT /allele="HLA-C*15:new"
FT /number=8
XX
SQ Sequence 3349 BP; 626 A; 979 C; 1043 G; 701 T; 0 other;
gatcaggacg aagtcccagg tcccgggcgg ggctctcagg gtctcaggct ccaagggccg 60
tgtctgcact ggggaggcgc cgcgttgagg attctccact cccctgagtt tcacttcttc 120
tcccaacctg cgacgggtcc ttcttcctga atactcatga cgcgtcccca attcccactc 180
ccattgggtg tcgggttcta gagaagccaa tcagcgtctc cgcagtcccg gttctaaagt 240
ccccagtcac ccacccggac tcggattctc cccagacgcc gagatgcggg tcatggcgcc 300
ccgaaccctc ctcctgctgc tctcgggagc cctggccctg accgagacct gggcctgtga 360
gtgcggggtt gggagggaaa cggcctctgc ggagaggagc gaggggcccg cccggcgagg 420
gcgcaggacc cggggagccg cgcagggagg agggtcgggc gggtctcagc ccctcctcgc 480
ccccaggctc ccactccatg aggtatttct acaccgctgt gtcccggccc ggccgcggag 540
agccccactt catcgcagtg ggctacgtgg acgacacgca gttcgtgcgg ttcgacagcg 600
acgccgcgag tccaagaggg gagccgcggg cgccgtgggt ggagcaggag gggccggagt 660
attgggaccg ggagacacag aactacaagc gccaggcaca gactgaccga gtgaacctgc 720
ggaaactgcg cggctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc 780
aggtcacgac ccctccccat cccccacgga cggcccgggt cgccccgagt ctcccggtct 840
gagatccacc ccgaggctgc ggaacccgcc cagaccctcg accggagaga gccccagtca 900
cctttacccg gtttcatttt cagtttaggc caaaatcccc gcgggttggt cggggctggg 960
gcggggctcg ggggacgggg ctgaccacgg gggcggggcc agggtctcac atcatccaga 1020
ggatgtatgg ctgcgacctg gggcccgacg ggcgcctcct ccgcgggcat gaccagttag 1080
cctacgacgg caaggattac attgccctga acgaggacct gcgctcctgg accgccgcgg 1140
acacggcggc tcagatcacc cagcgcaagt gggaggcggc ccgtgaggcg gagcagctga 1200
gagcctacct ggagggcacg tgcgtggagt ggctccgcag atacctggag aacgggaagg 1260
agacgctgca gcgcgcgggt accaggggca gtggggagcc ttccctatct cctgtagatc 1320
tcccgggatg gccttccacg aggaggggag gaaaatggga tcagcgctag aatatcgccc 1380
tcccttgaat ggagaatggg atgagttttc ctgagtttcc tctgagggcc ccctctgctc 1440
tctaggacaa ttaagggatg aagtccttga ggaaatggag gggaagacag tccctggaat 1500
actgatcagg ggtccccttt gaccactttg accactgcag cagctgtggt caggctgctg 1560
acctttctct caggccttgt tctctgcctc acgctcaatg tgtttgaagg tttgattcca 1620
gcttttctga gtccttcggc ctccactcag gtcaggacca gaagtcgctg ttcctccctc 1680
agagactaga actttccaat gaataggaga ttatcccagg tgcctgtgtc caggctggcg 1740
tctgggttct gtgccccctt ccccacccca ggtgtcctgt ccattctcag gatggtcaca 1800
tgggcgctgt tggagtgtcg caagagagat acaaagtgtc tgaattttct gactcttccc 1860
gtcagaacac ccaaagacac acgtgaccca ccatcccgtc tctgaccatg aggccaccct 1920
gaggtgctgg gccctgggct tctaccctgc ggagatcaca ctgacctggc agcgggatgg 1980
cgaggaccaa actcaggaca ccgagcttgt ggagaccagg ccagcaggag atggaacctt 2040
ccagaagtgg gcagctgtgg tggtgccttc tggagaagag cagagataca cgtgccatgt 2100
gcagcacgag gggctgccgg agcccctcac cctgagatgg ggtaaggagg gggatgaggg 2160
gtcatgtgtc ttctcaggga aagcagaagt cctggagccc ttcagctggg tcagggctga 2220
ggcttggggg tcagggcccc tcaccttccc ctcctttccc agagccatct tcccagccca 2280
ccatccccat cgtgggcatc gttgctggcc tggctgtcct ggctgtccta gctgtcctag 2340
gagctgtgat ggctgttgtg atgtgtagga ggaagagctc aggtagggaa ggggtgagga 2400
gtggggtctg ggttttcttg tcccactggg agtttcaagc cccaggtaga agtgtgcccc 2460
acctcgttac tggaagcacc atccacacat gggccatccc agcctgggac cctgtgtgcc 2520
agcacttact ctgttgtgaa gcacatgaca atgaaggaca gatgtatcac cttgatgatt 2580
atggtgttgg ggtccttgat tccagcattc atgagtcagg ggaaggtccc tgctaaggac 2640
agaccttagg agggcagttg ctccagaacc cacagctgct ttccccgtgt ttcctgatcc 2700
tgccctgggt ctgcagtcat agttctggaa acttctcttg ggtccaagac taggaggttc 2760
ccctaagatc gcatggccct gcctcctccc tgtcccctca cagggcattt tcttcccaca 2820
ggtggaaaag gagggagctg ctctcaggct gcgtgtaagt gatggcggtg ggcgtgtgga 2880
ggagcttacc caccccataa ttcctcttgt cccacatctc ctgcgggctc tgaccaggtc 2940
tttttttttg ttctacccca gccagcaaca gtgcccaggg ctctgatgag tctctcatcg 3000
cttgtaaagg tgagattctg gggagctgaa gtggtcgggg gtggggcaga gggaaaaggc 3060
ctaggtaatg gggatccttt gattgggacg tttcgaatgt gtggtgagct gttcagagtg 3120
tcatcactta ccatgactga cctgaatttg ttcatgacta ttgtgttctg tagcctgaga 3180
cagctgcctg tgtgggactg agatgcagga tttcttcaca cctctccttt gtgacttcaa 3240
gagcctctgg catctctttc tgcaaaggca tctgaatgtg tctgcgttcc tgttagcata 3300
atgtgaggag gtggagagac agcccacccc cgtgtccacc gtgacccct 3349
//