Dbfetch
ID LN912861; SV 1; linear; genomic DNA; STD; HUM; 3349 BP. XX AC LN912861; XX DT 29-NOV-2015 (Rel. 127, Created) DT 21-JUL-2017 (Rel. 133, Last updated, Version 2) XX DE Homo sapiens HLA-C gene for MHC class I antigen, cell line DKMS-LSL-C-594, DE allele HLA-C*04:new XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3349 RA Albrecht V.; RT ; RL Submitted (23-NOV-2015) to the INSDC. RL Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 43, Saxony, RL 01307 Dresden, GERMANY. XX RN [2] RX DOI; .1111/tan.13057. RX PUBMED; 28547825. RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A., RA Winkler S., Lange V., Bohme I., Schmidt A.H.; RT "Dual redundant sequencing strategy: Full-length gene characterisation of RT 1056 novel and confirmatory HLA alleles"; RL HLA. 90(2):79-87(2017). XX DR MD5; d27ec8f67ea5a1ebd16347813b9dc367. DR IMGT/HLA; HLA-C*04:243; HLA15177. XX FH Key Location/Qualifiers FH FT source 1..3349 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL-C-594" FT /db_xref="taxon:9606" FT exon 1..356 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=1 FT CDS join(284..356,487..756,1003..1278,1866..2141,2263..2382, FT 2822..2854,2962..3009,3174..3178) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /product="MHC class I antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:A0A0S4T1T7" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:A0A0S4T1T7" FT /protein_id="CUU97188.1" FT /translation="MRVMAPRTLILLLSGALALTETWAGSHSMRYFSISVSWPGRGEPR FT FIAVGYVDDTQFVRFDSDAASPRGEPREPWVEQEGPEYWDRETQKYKRQAQADRVNLRK FT LRGYYNQSEDGSHTLQRMFGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWKPSSQPTIPIVGIVAGLAVLAVLAVLGAMVAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT intron 357..486 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=1 FT exon 487..756 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=2 FT intron 757..1002 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=2 FT exon 1003..1278 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=3 FT intron 1279..1865 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=3 FT exon 1866..2141 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=4 FT intron 2142..2262 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=4 FT exon 2263..2382 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=5 FT intron 2383..2821 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=5 FT exon 2822..2854 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=6 FT intron 2855..2961 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=6 FT exon 2962..3009 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=7 FT intron 3010..3173 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=7 FT exon 3174..3349 FT /gene="HLA-C" FT /allele="HLA-C*04:new" FT /number=8 XX SQ Sequence 3349 BP; 628 A; 973 C; 1045 G; 703 T; 0 other; aatcaggacg aagtcccagg tcccgggcgg ggctctcagg gtctcaggct ccaagggccg 60 tgtctgcact ggggaggcgc cgcgttgggg attctccact cccctgagtt tcacttcttc 120 tcccaacctg cgtcgggtcc ttcttcctga atactcatga cgcgtcccca attcccactc 180 ccattgggtg tcgggttcta gagaagccaa tcagcgtctc cgcagtcccg gttctaaagt 240 ccccagtcac ccacccggac tcagattctc cccagacgcc gagatgcggg tcatggcgcc 300 ccgaaccctc atcctgctgc tctcgggagc cctggccctg accgagacct gggccggtga 360 gtgcggggtt gggagggaaa cggcctctgg ggagaggagc gaggggcccg cccggcgagg 420 gcgcaggacc cggggagccg cgcagggagg agggtcgggc gggtctcagc cactcctcgt 480 ccccaggctc ccactccatg aggtatttct ccatatccgt gtcctggccc ggccgcgggg 540 agccccgctt catcgcagtg ggctacgtgg acgacacgca gttcgtgcgg ttcgacagcg 600 acgccgcgag tccaagaggg gagccgcggg agccgtgggt ggagcaggag gggccggagt 660 attgggaccg ggagacacag aagtacaagc gccaggcaca ggctgaccga gtgaacctgc 720 ggaaactgcg cggctactac aaccagagcg aggacggtga gtgaccccgg cccggggcgc 780 aggtcacgac ccctccccat cccccacgga cggcccgggt cgccccgagt ctccccgtct 840 gagatccacc ccgaggctgc ggaacccgcc cagaccctcg accggagaga gccccagtca 900 cctttacccg gtttcatttt cagtttaggc caaaatcccc gcgggttggt cgggactggg 960 gcggggctcg ggggaccggg ctgaccacgg gggcggggcc agggtctcac accctccaga 1020 ggatgtttgg ctgcgacctg gggccggacg ggcgcctcct ccgcgggtat aaccagttcg 1080 cctacgacgg caaggattac atcgccctga acgaggatct gcgctcctgg accgccgcgg 1140 acacggcggc tcagatcacc cagcgcaagt gggaggcggc ccgtgaggcg gagcagcgga 1200 gagcctacct ggagggcacg tgcgtggagt ggctccgcag atacctggag aacgggaagg 1260 agacgctgca gcgcgcgggt accaggggca gtggggagcc ttccccatct cccgtagatc 1320 tcccgggatg gcctcccacg aggaggggag gaaaatggga tcagcgctag aatatcgccc 1380 tcccttgaat ggagaatggg atgagttttc ctgagtttcc tctgagggcc ccctctgctc 1440 tctaggacaa ttaagggatg aagtccttga ggaaatggag gggaagacag tccctggaat 1500 actgatcagg ggtccccttt gaccactttg accactgcag cagctgtggt caggctgctg 1560 acctttctct caggccttgt tctctgcctg acgctcaatg tgtttgaagg tttgattcca 1620 gcttttctga gtccttcggc ctccactcag gtcaggacca gaagtcgctg ttcctccctc 1680 agagactaga actttccaat gaataggaga ttatcccagg tgcctgtgtc caggctggcg 1740 tctgggttct gtgccccctt ccccacccca ggtgtcctgt ccattctcag gatggtcaca 1800 tgggcgctgt tggagtgtcg caagagagat acaaagtgtc tgaattttct gactcttccc 1860 atcagaacac ccaaagacac acgtgaccca ccatcccgtc tctgaccatg aggccaccct 1920 gaggtgctgg gccctgggct tctaccctgc ggagatcaca ctgacctggc agtgggatgg 1980 ggaggaccaa actcaggaca ccgagcttgt ggagaccagg ccagcaggag atggaacctt 2040 ccagaagtgg gcagctgtgg tggtgccttc tggagaagag cagagataca cgtgccatgt 2100 tcagcacgag gggctgccgg agcccctcac cctgagatgg agtaaggagg gggatgaggg 2160 gtgatgtgtc ttctcaggga aagcagaagt cctggagccc ttcagccggg tcagggctga 2220 ggcttggagg tcagggcccc tcaccttccc ctcctttccc agagccgtct tcccagccca 2280 ccatccccat cgtgggcatc gttgctggcc tggctgtcct ggctgtccta gctgtcctag 2340 gagctatggt ggctgttgtg atgtgtagga ggaagagctc aggtagggaa ggggtgagga 2400 gtggggtctg ggttttcttg ttccactggg agtttcaagc cccaggtaga agtgtgcccc 2460 acctcgttac tggaagcacc atccacacat gggccatccc agcctgggac cctgtgtgcc 2520 agcacttact ctgttgtgaa gcacatgaca atgaaggaca gatgtatcac cttgatgatt 2580 atggtgttgg ggtccttgat tccagcattc atgagtcagg ggaaggtccc tgctaaggac 2640 agaccttagg agggcagttg cttcagaacc cacagctgct ttccccgtgt ttcctgatcc 2700 tgccctgggt ctgcagtcat agttctggaa acttctcttg ggtccaagac taggaggttc 2760 ccctaagatc gcatggccct gcctcctccc tgtcccctca cagggcattt tcttcccaca 2820 ggtggaaaag gagggagctg ctctcaggct gcgtgtaagt gatggcggtg ggcgtgtgga 2880 ggagctcacc caccccataa ttcctcttgt cccacatctc ctgcgggctc tgaccaggtc 2940 tttttttttg ttctacccca gccagcaaca gtgcccaggg ctctgatgag tctctcatcg 3000 cttgtaaagg tgagattctg gggagctgaa gtggtcgggg gtggggcaga gggaaaaggc 3060 ctaggtaatg gggatccttt gattgggacg tttcgaatgt gtggtgagct gttcagagtg 3120 tcatcactta ccatgactga cctgaatttg ttcatgacta ttgtgttctg tagcctgaga 3180 cagctgcctg tgtgggactg agatgcagga tttcttcaca cctctccttt gtgacttcaa 3240 gagcctctgg catctctttc tgcaaaggca tctgaatgtg tctgcgttcc tgttagcata 3300 atgtgaggag gtggagagac agcccacccc cgtgtccacc gtgacccct 3349 //