Dbfetch
ID LN880523; SV 1; linear; genomic DNA; STD; HUM; 3349 BP.
XX
AC LN880523;
XX
DT 16-SEP-2015 (Rel. 126, Created)
DT 21-JUL-2017 (Rel. 133, Last updated, Version 2)
XX
DE Homo sapiens, HLA-C gene for MHC class I antigen, allele HLA-C*16:new
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-3349
RA Albrecht V.;
RT ;
RL Submitted (25-AUG-2015) to the INSDC.
RL Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 43, Saxony,
RL 01307 Dresden, GERMANY.
XX
RN [2]
RX DOI; .1111/tan.13057.
RX PUBMED; 28547825.
RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A.,
RA Winkler S., Lange V., Bohme I., Schmidt A.H.;
RT "Dual redundant sequencing strategy: Full-length gene characterisation of
RT 1056 novel and confirmatory HLA alleles";
RL HLA. 90(2):79-87(2017).
XX
DR MD5; 7a311a636da73a379cb0aee4bdc08f37.
DR IMGT/HLA; HLA-C*16:102; HLA16182.
XX
FH Key Location/Qualifiers
FH
FT source 1..3349
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /cell_line="DKMS-LSL-C-90"
FT /db_xref="taxon:9606"
FT exon 1..356
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=1
FT CDS join(284..356,487..756,1003..1278,1866..2141,2263..2382,
FT 2822..2854,2962..3009,3174..3178)
FT /codon_start=1
FT /transl_table=1
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /product="MHC class I antigen"
FT /function="antigen presenting molecule"
FT /db_xref="GOA:A0A0K8K5S5"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:A0A0K8K5S5"
FT /protein_id="CUI25656.1"
FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVNLRK
FT LRGYYNQSEAGSHTLQWMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLSSWTAADTA
FT AQITQRKWEAARAAEQQRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG
FT KGGSCSQAASSNSAQGSDESLIACKA"
FT intron 357..486
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=1
FT exon 487..756
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=2
FT intron 757..1002
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=2
FT exon 1003..1278
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=3
FT intron 1279..1865
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=3
FT exon 1866..2141
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=4
FT intron 2142..2262
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=4
FT exon 2263..2382
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=5
FT intron 2383..2821
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=5
FT exon 2822..2854
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=6
FT intron 2855..2961
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=6
FT exon 2962..3009
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=7
FT intron 3010..3173
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=7
FT exon 3174..3349
FT /gene="HLA-C"
FT /allele="HLA-C*16:new"
FT /number=8
XX
SQ Sequence 3349 BP; 623 A; 984 C; 1043 G; 699 T; 0 other;
gatcaggacg aagtcccagg tcccgggcgg ggctctcagg gtctcaggct ccaagggccg 60
tgtctgcact ggggaggcgc cgcgttgagg attctccact cccctgagtt tcacttcttc 120
tcccaacctg cgtcgggtcc ttcttcctga atactcatga cgcgtcccca attcccactc 180
ccattgggtg tcgggttcta gagaagccaa tcagcgtctc cgcagtcccg gttctaaagt 240
ccccagtcac ccacccggac tcggattctc cccagacgcc gagatgcggg tcatggcgcc 300
ccgaaccctc atcctgctgc tctcgggagc cctggccctg accgagacct gggcctgtga 360
gtgcggggtt gggagggaaa cggcctctgc ggagaggagc gaggggcccg cccggcgagg 420
gcgcaggacc cggggagccg cgcagggagg agggtcgggc gggtctcagc ccctcctcgc 480
ccccaggctc ccactccatg aggtatttct acaccgccgt gtcccggccc ggccgcggag 540
agccccgctt catcgcagtg ggctacgtgg acgacacgca gttcgtgcgg ttcgacagcg 600
acgccgcgag tccaagaggg gagccgcggg cgccgtgggt ggagcaggag gggccggagt 660
attgggaccg ggagacacag aagtacaagc gccaggcaca gactgaccga gtgaacctgc 720
ggaaactgcg cggctactac aaccagagcg aggccggtga gtgaccccgg cccggggcgc 780
aggtcacgac ccctccccat cccccacgga cggcccgggt cgccccgagt ctcccggtct 840
gagatccacc ccgaggctgc ggaacccgcc cagaccctcg gccggagaga gccccagtca 900
cctttacccg gtttcatttt cagtttaggc caaaatcccc gcgggttggt cggggctggg 960
gcggggctcg cgggacgggg ctgaccacgg gggcggggcc agggtctcac accctccagt 1020
ggatgtatgg ctgcgacctg gggcccgacg ggcgcctcct ccgcgggtat gaccagtccg 1080
cctacgacgg caaggattac atcgccctga acgaggacct gagctcctgg accgccgcgg 1140
acacggcggc tcagatcacc cagcgcaagt gggaggcggc ccgtgcggcg gagcagcaga 1200
gagcctacct ggagggcacg tgcgtggagt ggctccgcag atacctggag aacgggaagg 1260
agacgctgca gcgcgcgggt accaggggca gtggggagcc ttccccatct cctgtagatc 1320
tcccgggatg gcctcccacg aggaggggag gaaaatggga tcagcgctag aatatcgccc 1380
tcccttgaat ggagaatggg atgagttttc ctgagtttcc tctgagggcc ccctctgctc 1440
tctaggacaa ttaagggatg aagtccttga ggaaatggag gggaagacag tccctggaat 1500
actgatcagg ggtccccttt gaccactttg accactgcag cagctgtggt caggctgctg 1560
acctttctct caggccttgt tctctgcctc atgctcaatg tgtttgaagg tttgattcca 1620
gcttttctga gttcttcagc ctccactcag gtcaggacca gaagtcgctg ttcctccctc 1680
agagactaga actttccaat gaataggaga ttatcccagg tgcctgtgtc caggctggcg 1740
tctgggttct gtgccccctt ccccacccca ggtgtcctgt ccattctcag gatggtcaca 1800
tgggcgctgt tggagtgtcg caagagagat acaaagtgtc tgaattttct gactcttccc 1860
gtcagaacac ccaaagacac acgtgaccca ccatctcgtc tctgaccatg aggccaccct 1920
gaggtgctgg gccctgggct tctaccctgc ggagatcaca ctgacctggc agcgggatgg 1980
cgaggaccaa actcaggaca ccgagcttgt ggagaccagg ccagcaggag atggaacctt 2040
ccagaagtgg gcagctgtgg tggtgccttc tggagaagag cagagataca cgtgccatgt 2100
gcagcacgag gggctgccgg agcccctcac cctgagatgg ggtaaggagg gggatgaggg 2160
gtcatgtgtc ttctcaggga aagcagaagt cctggagccc ttcagccggg tcagggctga 2220
ggcttggggg tcagggcccc tcaccttccc ctcctttccc agagccatct tcccagccca 2280
ccatccccat cgtgggcatc gttgctggcc tggctgtcct ggctgtccta gctgtcctag 2340
gagctgtggt ggctgttgtt atgtgtagga ggaagagctc aggtagggaa ggggtgagga 2400
gtggggtctg ggttttcttg tcccactggg agtttcaagc cccaggtaga agtgtgcccc 2460
acctcgttac tggaagcacc atccacacat gggccatccc agcctgggac cctgtgtgcc 2520
agcacttact ctgttgtgaa gcacatgaca atgaaggaca gatgtatcac cttgatgatt 2580
atggtgttgg ggtccttgat tccagcattc atgagtcagg ggaaggtccc tgctaaggac 2640
agaccttagg agggcagttg ctccagaacc cacagctgct ttccctgtgt ttcctgatcc 2700
tgccctgggt ctgcagtcat agttctggaa acttctcttg ggtccaagac taggaggttc 2760
ccctaagatc gcatggccct gcctcctccc tgtcccctca cagggcattt tcttcccaca 2820
ggtggaaaag gagggagctg ctctcaggct gcgtgtaagt gatggcagtg ggcgtgtgga 2880
ggagctcacc caccccataa ttcctcttgt cccacatctc ctgcgggctc tgaccaggtc 2940
tttttttttg ttctacccca gccagcaaca gtgcccaggg ctctgatgag tctctcatcg 3000
cttgtaaagg tgagattctg gggagctgaa gtggtcgggg gtggggcaga gggaaaaggc 3060
ctaggtaatg gggatccttt gattgggacg tttcgaatgt gtggtgagct gttcagagtg 3120
tcatcactta ccatgactga cctgaatttg ttcatgacta ttgtgttctg tagcctgaga 3180
cagctgcctg tgtgggactg agatgcagga tttcttcaca cctctccttt gtgacttcaa 3240
gagcctctgg catctctttc tgcaaaggca tctgaatgcg tctgcgttcc tgttagcata 3300
atgtgaggag gtggagagac agcccacccc cgtgtccacc gtgacccct 3349
//