Dbfetch

ID   LN877301; SV 2; linear; genomic DNA; STD; HUM; 3314 BP.
XX
AC   LN877301;
XX
DT   29-SEP-2016 (Rel. 130, Created)
DT   29-SEP-2016 (Rel. 130, Last updated, Version 1)
XX
DE   Homo sapiens HLA-A gene for MHC class I antigen, allele HLA-A*26new
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-3314
RA   Marsh S.;
RT   ;
RL   Submitted (28-JUL-2015) to the INSDC.
RL   HLA Informatics Group, ANRI, Royal Free Hospital, London, NW3 2QG, UNITED
RL   KINGDOM.
XX
RN   [2]
RA   Marsh S.G.E.;
RT   "Full-length genomic HLA sequences";
RL   Unpublished.
XX
DR   MD5; 959aea811881d072aa315497639bdb62.
DR   Ensembl-Gn; ENSG00000206505; homo_sapiens.
DR   Ensembl-Tr; ENST00000383605; homo_sapiens.
DR   Ensembl-Tr; ENST00000549224; homo_sapiens.
DR   IMGT/HLA; HLA-A*26:01:39; HLA14078.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3314
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /clone="AN300104"
FT                   /db_xref="taxon:9606"
FT   CDS             join(301..373,504..773,1015..1290,1891..2166,2266..2382,
FT                   2821..2853,2996..3043,3213..3217)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26new"
FT                   /product="MHC class I antigen"
FT                   /function="antigen presenting molecule"
FT                   /db_xref="GOA:Q5SPM2"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR010579"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:Q5SPM2"
FT                   /protein_id="CUA55044.1"
FT                   /translation="MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPR
FT                   FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRANLGT
FT                   LRGYYNQSEDGSHTIQRMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMA
FT                   AQITQRKWETAHEAEQWRAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHE
FT                   ATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRY
FT                   TCHVQHEGLPKPLTLRWEPSSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRK
FT                   GGSYSQAASSDSAQGSDMSLTACKV"
FT   exon            <301..373
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=1
FT   intron          374..503
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=1
FT   exon            504..773
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=2
FT   intron          774..1014
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=2
FT   exon            1015..1290
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=3
FT   intron          1291..1890
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=3
FT   exon            1891..2166
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=4
FT   intron          2167..2265
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=4
FT   exon            2266..2382
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=5
FT   intron          2383..2820
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=5
FT   exon            2821..2853
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=6
FT   intron          2854..2995
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=6
FT   exon            2996..3043
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=7
FT   intron          3044..3212
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=7
FT   exon            3213..>3217
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*26:01:39"
FT                   /number=8
XX
SQ   Sequence 3314 BP; 630 A; 957 C; 1028 G; 699 T; 0 other;
     caggagcaga ggggtcaggg cgaagtccca gggccccagg cgtggctctc agggtctcag        60
     gccccgaagg cggtatatgg attggggagt cccagccttg gggattcccc aactccgcag       120
     tttcttttct ccctctccca acctatgtag ggtccttctt cctggatact cacgacgcgg       180
     acccagttct cactcccatt gggtgtcggg tttccagaga agccaatcag tgtcgtcgcg       240
     gtcgcggttc taaagtccgc acgcacccac cgggactcag attctcccca gacgccgagg       300
     atggccgtca tggcgccccg aaccctcgtc ctgctactct cgggggccct ggccctgacc       360
     cagacctggg cgggtgagtg cggggtcggg agggaaacgg cctctgtggg gagaagcaag       420
     gggcccgccc ggcgggggcg caggacccgg gaagccgcgc ctggaggagg gtcgggcggg       480
     tctcagccac tcctcgcccc caggctccca ctccatgagg tatttctaca cctccgtgtc       540
     ccggcccggc cgcggggagc cccgcttcat cgccgtgggc tacgtggacg acacgcagtt       600
     cgtgcggttc gacagcgacg ccgcgagcca gaggatggag ccgcgggcgc cgtggataga       660
     gcaggagggg ccggagtatt gggaccggaa cacacggaat gtgaaggccc actcacagac       720
     tgaccgagcg aacctgggga ccctgcgcgg ctactacaac cagagcgagg acggtgagtg       780
     accccggccc ggggcgcagg tcacgacccc tcatccccca cggacgggcc aggtcgccca       840
     cagtctccgg gtccgagatc cgccccgaag ccgcgggacc ccgagaccct tgccccggga       900
     gaggcccagg cgcctttacc cggtttcatt ttcagtttag gccaaaaatc cccccgggtt       960
     ggtcggggcg gggcggggct cgggggaccg ggctgacctc ggggtccggg ccaggttctc      1020
     acaccatcca gaggatgtat ggttgcgacg tggggccgga cgggcgcttc ctccgcgggt      1080
     accagcagga cgcttacgac ggcaaggatt acatcgccct gaacgaggac ctgcgctctt      1140
     ggaccgcggc ggacatggcg gctcagatca cccagcgcaa gtgggagacg gcccatgagg      1200
     cggagcagtg gagagcctac ctggagggcc ggtgcgtgga gtggctccgc agatacctgg      1260
     agaacgggaa ggagacgctg cagcgcacgg gtaccagggg ccacggggcg cctccctgat      1320
     cgcctgtaga tctcccgggc tggcctccca caaggagggg agacaattgg gaccaacact      1380
     agaatatcgc cctccctctg gtcctgaggg agaggaatcc tcctgggttt ccagatcctg      1440
     taccagagag tgactctgag gttccgccct gctctctgac acaattaagg gataaaatct      1500
     ctgaaggaat gacgggaaga cgatccctcg aatactgatg agtggttccc tttgacacac      1560
     accggcagca gccttgggcc cgtgactttt cctctcaggc cttgttctct gcttcacact      1620
     caatgtgtgt gggggtctga gtccagcact tctgagtccc tcagcctcca ctcaggtcag      1680
     gaccagaagt cgctgttccc tcttcaggga ctagaatttt ccacggaata ggagattatc      1740
     ccaggtgcct gtgtccaggc tggtgtctgg gttctgtgct cccttcccca tcccaggtgt      1800
     cctgtccatt ctcaagatag ccacatgtgt gctggaggag tgtcccatga cagatgcaaa      1860
     atgcctgaat gttctgactc ttcctgacag acgcccccaa gacgcatatg actcaccacg      1920
     ctgtctctga ccatgaggcc accctgaggt gctgggccct gagcttctac cctgcggaga      1980
     tcacactgac ctggcagcgg gatggggagg accagaccca ggacacggag ctcgtggaga      2040
     ccaggcctgc aggggatggg accttccaga agtgggcgtc tgtggtggtg ccttctggac      2100
     aggagcagag atacacctgc catgtgcagc atgagggtct gcccaagccc ctcaccctga      2160
     gatggggtaa ggagggagac gggggtgtca tgtcttttag ggaaagcagg agcctctctg      2220
     acctttagca gggtcagggc ccctcacctt cccctctttt cccagagccg tcttcccagc      2280
     ccaccatccc catcgtgggc atcattgctg gcctggttct ctttggagct gtgatcgctg      2340
     gagctgtggt cgctgctgtg atgtggagga ggaagagctc aggtggggaa gggatgaagg      2400
     gtgggtctga gatttcttgt ctcactgagg gttccaagac ccaggtagaa gtgtgccctg      2460
     cctcgttact gggaagcacc atccacaatt atgagcctac ccagcctggg ccctgtgtgc      2520
     cagcacttac tcttttgtaa agcacctgtt aaaatgaagg acagatttat caccttgatt      2580
     acggcggtga tgggacctga tcccagcagt cacaagtcac aggggaaggt ccctgaggac      2640
     cttcaggagg gcggttggtc caggacccac acctgctttc ttcatgtttc ctgatcccgc      2700
     cctgggtctg cagtcacaca tttctggaaa cttctctgag gtccaagact tggaggttcc      2760
     tctaggacct taaggccctg gctcctttct ggtatctcac aggacatttt cttcccacag      2820
     atagaaaagg agggagctac tctcaggctg caagtaagta tgaaggaggc tgatgcctga      2880
     ggtccttggg atattgtgtt tgggagcccg tgggggagct cacccacccc acaattcctc      2940
     ctctagccac atgttctgtg ggatctgacc aggttctgtt tttgtcctac cccaggcagt      3000
     gacagtgccc agggctctga tatgtctctc acagcttgta aaggtgagag cctggagggc      3060
     ctgatgtgtg ttgggtgttg ggcggaacag tggacgcagc tgtgctatgg ggtttctttg      3120
     cattggatgt attgagcatg cgatgggctg tttaaagtgt gactcctcac tgtgacagat      3180
     acgaatttgt tcatgaatat ttttttctat agtgtgagac agctgccttg tgtgggactg      3240
     agaggcaaga tttgttcctg cccttccctt tgtgacttga agaaccctga ctttgtttct      3300
     gcaaaggcac ctgc                                                        3314
//