Dbfetch
ID LN877301; SV 2; linear; genomic DNA; STD; HUM; 3314 BP.
XX
AC LN877301;
XX
DT 29-SEP-2016 (Rel. 130, Created)
DT 29-SEP-2016 (Rel. 130, Last updated, Version 1)
XX
DE Homo sapiens HLA-A gene for MHC class I antigen, allele HLA-A*26new
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-3314
RA Marsh S.;
RT ;
RL Submitted (28-JUL-2015) to the INSDC.
RL HLA Informatics Group, ANRI, Royal Free Hospital, London, NW3 2QG, UNITED
RL KINGDOM.
XX
RN [2]
RA Marsh S.G.E.;
RT "Full-length genomic HLA sequences";
RL Unpublished.
XX
DR MD5; 959aea811881d072aa315497639bdb62.
DR Ensembl-Gn; ENSG00000206505; homo_sapiens.
DR Ensembl-Tr; ENST00000383605; homo_sapiens.
DR Ensembl-Tr; ENST00000549224; homo_sapiens.
DR IMGT/HLA; HLA-A*26:01:39; HLA14078.
XX
FH Key Location/Qualifiers
FH
FT source 1..3314
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /clone="AN300104"
FT /db_xref="taxon:9606"
FT CDS join(301..373,504..773,1015..1290,1891..2166,2266..2382,
FT 2821..2853,2996..3043,3213..3217)
FT /codon_start=1
FT /transl_table=1
FT /gene="HLA-A"
FT /allele="HLA-A*26new"
FT /product="MHC class I antigen"
FT /function="antigen presenting molecule"
FT /db_xref="GOA:Q5SPM2"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:Q5SPM2"
FT /protein_id="CUA55044.1"
FT /translation="MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRANLGT
FT LRGYYNQSEDGSHTIQRMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMA
FT AQITQRKWETAHEAEQWRAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHE
FT ATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRY
FT TCHVQHEGLPKPLTLRWEPSSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRK
FT GGSYSQAASSDSAQGSDMSLTACKV"
FT exon <301..373
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=1
FT intron 374..503
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=1
FT exon 504..773
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=2
FT intron 774..1014
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=2
FT exon 1015..1290
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=3
FT intron 1291..1890
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=3
FT exon 1891..2166
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=4
FT intron 2167..2265
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=4
FT exon 2266..2382
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=5
FT intron 2383..2820
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=5
FT exon 2821..2853
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=6
FT intron 2854..2995
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=6
FT exon 2996..3043
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=7
FT intron 3044..3212
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=7
FT exon 3213..>3217
FT /gene="HLA-A"
FT /allele="HLA-A*26:01:39"
FT /number=8
XX
SQ Sequence 3314 BP; 630 A; 957 C; 1028 G; 699 T; 0 other;
caggagcaga ggggtcaggg cgaagtccca gggccccagg cgtggctctc agggtctcag 60
gccccgaagg cggtatatgg attggggagt cccagccttg gggattcccc aactccgcag 120
tttcttttct ccctctccca acctatgtag ggtccttctt cctggatact cacgacgcgg 180
acccagttct cactcccatt gggtgtcggg tttccagaga agccaatcag tgtcgtcgcg 240
gtcgcggttc taaagtccgc acgcacccac cgggactcag attctcccca gacgccgagg 300
atggccgtca tggcgccccg aaccctcgtc ctgctactct cgggggccct ggccctgacc 360
cagacctggg cgggtgagtg cggggtcggg agggaaacgg cctctgtggg gagaagcaag 420
gggcccgccc ggcgggggcg caggacccgg gaagccgcgc ctggaggagg gtcgggcggg 480
tctcagccac tcctcgcccc caggctccca ctccatgagg tatttctaca cctccgtgtc 540
ccggcccggc cgcggggagc cccgcttcat cgccgtgggc tacgtggacg acacgcagtt 600
cgtgcggttc gacagcgacg ccgcgagcca gaggatggag ccgcgggcgc cgtggataga 660
gcaggagggg ccggagtatt gggaccggaa cacacggaat gtgaaggccc actcacagac 720
tgaccgagcg aacctgggga ccctgcgcgg ctactacaac cagagcgagg acggtgagtg 780
accccggccc ggggcgcagg tcacgacccc tcatccccca cggacgggcc aggtcgccca 840
cagtctccgg gtccgagatc cgccccgaag ccgcgggacc ccgagaccct tgccccggga 900
gaggcccagg cgcctttacc cggtttcatt ttcagtttag gccaaaaatc cccccgggtt 960
ggtcggggcg gggcggggct cgggggaccg ggctgacctc ggggtccggg ccaggttctc 1020
acaccatcca gaggatgtat ggttgcgacg tggggccgga cgggcgcttc ctccgcgggt 1080
accagcagga cgcttacgac ggcaaggatt acatcgccct gaacgaggac ctgcgctctt 1140
ggaccgcggc ggacatggcg gctcagatca cccagcgcaa gtgggagacg gcccatgagg 1200
cggagcagtg gagagcctac ctggagggcc ggtgcgtgga gtggctccgc agatacctgg 1260
agaacgggaa ggagacgctg cagcgcacgg gtaccagggg ccacggggcg cctccctgat 1320
cgcctgtaga tctcccgggc tggcctccca caaggagggg agacaattgg gaccaacact 1380
agaatatcgc cctccctctg gtcctgaggg agaggaatcc tcctgggttt ccagatcctg 1440
taccagagag tgactctgag gttccgccct gctctctgac acaattaagg gataaaatct 1500
ctgaaggaat gacgggaaga cgatccctcg aatactgatg agtggttccc tttgacacac 1560
accggcagca gccttgggcc cgtgactttt cctctcaggc cttgttctct gcttcacact 1620
caatgtgtgt gggggtctga gtccagcact tctgagtccc tcagcctcca ctcaggtcag 1680
gaccagaagt cgctgttccc tcttcaggga ctagaatttt ccacggaata ggagattatc 1740
ccaggtgcct gtgtccaggc tggtgtctgg gttctgtgct cccttcccca tcccaggtgt 1800
cctgtccatt ctcaagatag ccacatgtgt gctggaggag tgtcccatga cagatgcaaa 1860
atgcctgaat gttctgactc ttcctgacag acgcccccaa gacgcatatg actcaccacg 1920
ctgtctctga ccatgaggcc accctgaggt gctgggccct gagcttctac cctgcggaga 1980
tcacactgac ctggcagcgg gatggggagg accagaccca ggacacggag ctcgtggaga 2040
ccaggcctgc aggggatggg accttccaga agtgggcgtc tgtggtggtg ccttctggac 2100
aggagcagag atacacctgc catgtgcagc atgagggtct gcccaagccc ctcaccctga 2160
gatggggtaa ggagggagac gggggtgtca tgtcttttag ggaaagcagg agcctctctg 2220
acctttagca gggtcagggc ccctcacctt cccctctttt cccagagccg tcttcccagc 2280
ccaccatccc catcgtgggc atcattgctg gcctggttct ctttggagct gtgatcgctg 2340
gagctgtggt cgctgctgtg atgtggagga ggaagagctc aggtggggaa gggatgaagg 2400
gtgggtctga gatttcttgt ctcactgagg gttccaagac ccaggtagaa gtgtgccctg 2460
cctcgttact gggaagcacc atccacaatt atgagcctac ccagcctggg ccctgtgtgc 2520
cagcacttac tcttttgtaa agcacctgtt aaaatgaagg acagatttat caccttgatt 2580
acggcggtga tgggacctga tcccagcagt cacaagtcac aggggaaggt ccctgaggac 2640
cttcaggagg gcggttggtc caggacccac acctgctttc ttcatgtttc ctgatcccgc 2700
cctgggtctg cagtcacaca tttctggaaa cttctctgag gtccaagact tggaggttcc 2760
tctaggacct taaggccctg gctcctttct ggtatctcac aggacatttt cttcccacag 2820
atagaaaagg agggagctac tctcaggctg caagtaagta tgaaggaggc tgatgcctga 2880
ggtccttggg atattgtgtt tgggagcccg tgggggagct cacccacccc acaattcctc 2940
ctctagccac atgttctgtg ggatctgacc aggttctgtt tttgtcctac cccaggcagt 3000
gacagtgccc agggctctga tatgtctctc acagcttgta aaggtgagag cctggagggc 3060
ctgatgtgtg ttgggtgttg ggcggaacag tggacgcagc tgtgctatgg ggtttctttg 3120
cattggatgt attgagcatg cgatgggctg tttaaagtgt gactcctcac tgtgacagat 3180
acgaatttgt tcatgaatat ttttttctat agtgtgagac agctgccttg tgtgggactg 3240
agaggcaaga tttgttcctg cccttccctt tgtgacttga agaaccctga ctttgtttct 3300
gcaaaggcac ctgc 3314
//