Dbfetch
ID LN854626; SV 1; linear; genomic DNA; STD; HUM; 4791 BP.
XX
AC LN854626;
XX
DT 04-JUN-2015 (Rel. 125, Created)
DT 04-JUN-2015 (Rel. 125, Last updated, Version 1)
XX
DE Homo sapiens partial HLA-DQB1 gene for MHC class II antigen, allele
DE HLA-DQB1*05:new, cell line DKMS-LSL-DQB1-488
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-4791
RA Albrecht V.;
RT ;
RL Submitted (13-MAY-2015) to the INSDC.
RL Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 34, Saxony,
RL 01307 Dresden, GERMANY.
XX
RN [2]
RX DOI; https://doi.org/10.1111/tan.13057.
RX PUBMED; 28547825.
RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A.,
RA Winkler S., Lange V., Bohme I., Schmidt A.H.;
RT "Dual redundant sequencing strategy: Full-length gene characterisation of
RT 1056 novel and confirmatory HLA alleles";
RL HLA. -:1-9(2017).
XX
DR MD5; f24c3a4d1de2bb8e83750ccd9152e321.
DR IMGT/HLA; HLA-DQB1*05:106; HLA13937.
XX
FH Key Location/Qualifiers
FH
FT source 1..4791
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /cell_line="DKMS-LSL-DQB1-488"
FT /db_xref="taxon:9606"
FT CDS join(<1..270,2780..3061,3573..3683,4148..4171,4778..4791)
FT /codon_start=3
FT /transl_table=1
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /product="MHC class II antigen"
FT /function="antigen presenting molecule"
FT /db_xref="GOA:A0A0G4PZ24"
FT /db_xref="InterPro:IPR000353"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR014745"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="UniProtKB/TrEMBL:A0A0G4PZ24"
FT /protein_id="CRL52722.1"
FT /translation="DFVYQFKGLCYFTNGTERVRGVTRHIYNREEYVRFDSDVGVYRAV
FT TPQGRPSAEYWNSQKEVLEGARASVDRVCRHNYEVAYRGILQRRVEPTVTISPSRTEAL
FT NHHKLLICSVTDFYPSHIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRG
FT DVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSRKGP
FT QGPPPAGLLH"
FT exon 1..270
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=2
FT intron 271..2779
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=2
FT exon 2780..3061
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=3
FT intron 3062..3572
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=3
FT exon 3573..3683
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=4
FT intron 3684..4147
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=4
FT exon 4148..4171
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=5
FT intron 4172..4777
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=5
FT exon 4778..4791
FT /gene="HLA-DQB1"
FT /allele="HLA-DQB1*05:new"
FT /number=6
XX
SQ Sequence 4791 BP; 1220 A; 1099 C; 1141 G; 1331 T; 0 other;
aggatttcgt gtaccagttt aagggcctgt gctacttcac caacgggacg gagcgcgtgc 60
ggggtgtgac cagacacatc tataaccgag aggagtacgt gcgcttcgac agcgacgtgg 120
gggtgtaccg ggcggtgacg ccgcaggggc ggcctagcgc cgagtactgg aacagccaga 180
aggaagtcct ggagggggcc cgggcgtcgg tggacagagt gtgcagacac aactacgagg 240
tggcgtaccg cgggatcctg cagaggagag gtgagcgtcg tcgcccctcc gtgaggccca 300
ccgttggccg ggacctctag tctccgtgct gggaggggcg atggggttgc ggcctctgaa 360
acctgagccc cgtttattcc accccagggg acaggagttg gcggcgtgag tggtggggca 420
ggtgcatcag atgggcgggg acctagggca gagcagggag acaagcagag ttggccaggc 480
tgcctagtgt ccccccaggg tcctcgtctg ttggcctcgt cctccgctct gcacgtttct 540
cgcctcgtgc cttatgtgtt tgcctcctcg tgccttacct ttgctaagca gttctctctg 600
cccccaatgc ccaccctctt cccctgcccg tccgccccac tagcactgcc ccattcagca 660
aggcccacgt gcgcagctcg cgccgcagga agcttcaggc ttggcctggt ggagttaggg 720
ctgccccaca actgcgccca gggcatccag caattacagt tgcaaaataa gatattttga 780
ctttttggct tcaaatcatt attcatcgta attctgtttt cctaaatggc tatcactaat 840
ggcggagatt tttgaggtgg gagactgttt aaattattgc atgcttggta cctgacactt 900
tgactggtat gtggtatgag ctcaatgatc ttctgttaaa ttcatgaata aatgtactca 960
gctgcccatc cacttaggct caagaaaaaa acagaggctt acaaatggac tttgttaatt 1020
attttctatc attttgctta atgctttaaa gtaaactctt attgactagg atcttaatag 1080
aatttgtgaa tacaaagtct gagaaaaaaa gtgtttgcta aaaataaaaa caatgcttga 1140
atgatgttgt aaggcagagt tttaatttct tagacaagct gaacaaatgg cacaatgcaa 1200
agggcagaag tttgggaata aataggttga agccattaaa ttattagata aaaatagttt 1260
caggttgctt ttggcctggg ttctcccctc cctccatcac tatccacttc aggaataaac 1320
attctgaaag tcaattttac ccattcaggt agcacttatt tctagacagt tgccttatca 1380
aataccatat atgttgtgcc atttaatctc acagttacct gtgcattaga gattagcatc 1440
accacttgat atatcctaat attggtacag gataaacact ttaagtaatc agcccacaat 1500
tactcaccaa gactttaagc ctcccaaagt ataaaccatt cttatgttcc tcagtgtaca 1560
tccatagagt ctaagggatg taaggccttg ttaaagccag ttttgaccag aagcagcaat 1620
gagcctattc ctgtttgttc tccatgttaa tggggcattg aaaattcact gattaatcaa 1680
tccctagtct gaccccagtg ttatctatgc aggttcacaa aacttttaga ttactttaca 1740
cccccttgcc ttcttttgac tcacattcta atgccagcaa gtacttatat ttttgctatt 1800
tcagttctat ttccataaaa tttattttat catcttttct cataaaattg tgccttctat 1860
tttactccca gtctgtttaa gatgaacaaa tcttacaagg tcacatagct gactgtgata 1920
tcagttggac tccaggaagg agaacctaaa gaaaagttca agtccaagca gaaaccgtga 1980
ttccttccgg atgatggctc aagagtgctg tttaactggg atgcaacctg ctgacctcag 2040
caaatcctag ttatatgtat gtgttcacat tacaggctca ttagcccagg ccgacctctg 2100
catggatctc agaatatttt ctatggagaa cgtacatgat aatgtctgat ttcagaacaa 2160
gaaagtaatt ctcaatagca aggaaatgga gtagggtaga cagctagtaa ctaaactcac 2220
ttgtgcgtta agaagaaatt aaggaaaaaa gaaaataaga gaacatatta ctaaataaag 2280
aaacacacat taaatatttg ctatagtttc acactaagag aataaaggaa atgcaataaa 2340
gtggcctgaa aggtaaagga tgagatgtgt aaaagaggca gggaaagatg tataataatt 2400
ttttactatg agcagcaatc tgagaagata aaggaattga gctgtgggca aacatgatgt 2460
ttgatcagtg ttatttgttt tcaaggcctg cctacttttt ttttcaaata ttacaaactt 2520
ttgaaataac attctttttg ttttttactg tctgttacta gattgcatat tctataaacg 2580
aagggaccat ggtatgttgt ttatctttgg attctcagtg attgtcaaat ttatatttgt 2640
tgaaggaacc ttaatccaag acttggactc caggtatctt tccactctgg ttccaaggag 2700
ggacccttcc tcatggtgga cgtgctgtgt ggtctcacgt ctcactcctg tgtcttttcc 2760
tgtctgttac tgcccttagt ggagcccaca gtgaccatct ccccatccag gacagaggcc 2820
ctcaaccacc acaaactgct gatctgctcg gtgacagatt tctatccaag ccacatcaaa 2880
gtccggtggt ttcggaatga tcaggaggag acagccggcg ttgtgtccac ccccctcatt 2940
aggaacggtg actggacctt ccagatcctg gtgatgctgg aaatgactcc ccagcgtgga 3000
gatgtctaca cctgccacgt ggagcacccc agcctccaga gccccatcac cgtggagtgg 3060
cgtaaggaga tattgagttt ctgttattat gggccccaca agacaaagag ctccttctga 3120
cccattcctt cccatctctt atccctgatg tcactactga gctgggaatc acaggagact 3180
agagcacctc tagttccatg gcgagtgcat cagaagaatc ctgatctcat cacctttcca 3240
gatgctaggg aaattactct acatactgtt gctctggatc ccagtcctga tagctctgac 3300
ggactgattc ttagggctgg tgattgggat cttagggtct aaggttatgg atgagttcct 3360
gaggagcaga gatttgcttc cccactctct cacctaccca ctgtatccaa ggacctattg 3420
tctggccttt cccctcctta ggggtggtct gaatggagag ctaggttcct ttgatgcctt 3480
cacctcctgc acctcagact ggacttcaac tcctcagcag gtatgctatg gggtgtgggg 3540
acaaacaccg acactcaggt tctgcttttt aggggctcag tctgaatctg cccagagcaa 3600
gatgctgagt ggcgttggag gcttcgtgct ggggctgatc ttccttgggc ttggccttat 3660
catccgtcaa aggagtcgga aaggtgagga accccagggg aaaaggggaa gatgggctgt 3720
gacccagacc ctctgttcag agtggtcctg tctgtagatt agctctttcc tcctgaccct 3780
gagaggaagt gcgaggagac aggacaagat gggaggaggc attggaatct gattttactg 3840
gttgaaaggt agcgctgtca cagagctgac tgatagagct tattccaggg catccttacc 3900
attcatcatt gtctcactgg ctcctttcca aaagcttcct ccattaagag ggtcagagcc 3960
tcagcctcct ttctttctgg tgacaatttc ctttgtttta ggggatttta aattagggtg 4020
ctgaaggcct ggaagaacat gggtgggaag agaatgtaac tctaagtcat gtgtgtcatt 4080
ttcctttggg gtgagagagt ggctgtttgt gtaatgagac ctttctctgc ataacttcct 4140
tttgtaagac ctcaagggcc tccaccagca ggtaatattt cagccatgat ccagtgtggg 4200
gaggcacagg tataagaggg aagagcatga gctgagtgta cctgaccaca gtggtccatg 4260
ttcatggcct atttgctgct atgaggatca agacttaggg gagaagtttg ccagtttcta 4320
ggaatctcca gacattgttc cccagaacca agccttaact ttggtggcat cttcttgtga 4380
aatgtggagc cagaaccaca gcttaaatgt tagacactag gatgatgccc actttgtgcc 4440
acatgatggt ggctactgcc tgtaggcatt ttccagtgac tgaaagaggc tgctagtggt 4500
cgggatgaga tatcatccaa tttcctaaaa agactgaacc cttcatattc cccagaagaa 4560
taacagctgt tccccacctc ccacacatct gcatcaagct gaagttctgt gtcctcgtga 4620
gctgatttca cctttgcaca gatcttgggg gaggtgatga caatacaccc tggacctcaa 4680
ctttctctgt ctgaagctgc agggggcccc tgaagggtcg gggagatggc aggcccacca 4740
ggatcaatgc tgatcaatgc tcttctctct tctccagggc ttctgcactg a 4791
//