Dbfetch
ID LN854619; SV 1; linear; genomic DNA; STD; HUM; 4943 BP. XX AC LN854619; XX DT 04-JUN-2015 (Rel. 125, Created) DT 04-JUN-2015 (Rel. 125, Last updated, Version 1) XX DE Homo sapiens partial HLA-DQB1 gene for MHC class II antigen, allele DE HLA-DQB1*03:new, cell line DKMS-LSL-DQB1-481 XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4943 RA Albrecht V.; RT ; RL Submitted (13-MAY-2015) to the INSDC. RL Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 34, Saxony, RL 01307 Dresden, GERMANY. XX RN [2] RX DOI; https://doi.org/10.1111/tan.13057. RX PUBMED; 28547825. RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A., RA Winkler S., Lange V., Bohme I., Schmidt A.H.; RT "Dual redundant sequencing strategy: Full-length gene characterisation of RT 1056 novel and confirmatory HLA alleles"; RL HLA. -:1-9(2017). XX DR MD5; 177d36af01ba3530a02a3ade7b043eae. DR IMGT/HLA; HLA-DQB1*03:198:01; HLA13931. XX FH Key Location/Qualifiers FH FT source 1..4943 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL-DQB1-481" FT /db_xref="taxon:9606" FT CDS join(<1..270,2900..3181,3699..3809,4295..4318,4930..4943) FT /codon_start=3 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:A0A0G4PZJ4" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A0G4PZJ4" FT /protein_id="CRL52715.1" FT /translation="DFVYQFKAMCYFTNGTERVRYVTRYIYNREEYARFDSDVEVYRAV FT TPLGPPDAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEAL FT NHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRKGDWTFQILVMLEMTPQHG FT DVYTCHVEHPSLQNPITVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGP FT QGPPPAGLLH" FT exon 1..270 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=2 FT intron 271..2899 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=2 FT exon 2900..3181 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=3 FT intron 3182..3698 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=3 FT exon 3699..3809 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=4 FT intron 3810..4294 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=4 FT exon 4295..4318 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=5 FT intron 4319..4929 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=5 FT exon 4930..4943 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:new" FT /number=6 XX SQ Sequence 4943 BP; 1276 A; 1141 C; 1155 G; 1371 T; 0 other; aggatttcgt gtaccagttt aaggccatgt gctacttcac caacgggacg gagcgcgtgc 60 gttatgtgac cagatacatc tataaccgag aggagtacgc acgcttcgac agcgacgtgg 120 aggtgtaccg ggcggtgacg ccgctggggc cgcctgacgc cgagtactgg aacagccaga 180 aggaagtcct ggagaggacc cgggcggagt tggacacggt gtgcagacac aactaccagt 240 tggagctccg cacgaccttg cagcggcgag gtgagcgtcg tcgccccgct gcgaggccca 300 ctcttggccg gggccccgag tctctgcgct aggagggacg aggggggcga agcctctgga 360 acctgagccg cgttcgttcc accccagggg acaggagttg gcggcgtggg tggtggggca 420 ggtgcatagg aggggcaggg acctaggggc agagcagggg tacaggtaga gttggtcaaa 480 ctgcctagtt ttgccccagc cttcccgtcc gtcagcctcg ccctctgctg tgcacgttct 540 cgcctcgtgc cttatgcgtt tgcctcctcg tgccttgcct ttgctaagca gtcctctctg 600 cccccaattt ctgccctctt cccctgcccg cccgccccgc tagcactgcc ccacccagca 660 aggtccacgt gcactgctcg cgccgcagga agcttcaggc ttggcctggt ggagttaggg 720 ctgctccaca actgtgcgca gggcatccag caattacagt tgtgaaataa gatattttga 780 cttttggctt caaattatta ttcatcgtaa ttccgttttc ttaaatggct ctcattcatg 840 gcggagctct ttgaggtgag agtgttttaa tcattttatg gccggtacct gacacattga 900 ctggcatgtg gtataagctc aataatcttc tgttaaatta atgaataaat gtgctcagct 960 gccaatccac ttaggctcaa gaaaaaccag aggtaaacag aaccttaaaa atggactttt 1020 attaattatt ttctatcatt ttgcttaatt ctttaaagta aactcttatt gacttggatc 1080 taaatagttt gtgaatacaa agtctgagga aaaaagtgtt tgctaaaaat aaaaacaaca 1140 cttgaatgat gtttgtaagg cagttttaat ttcttagaaa agctgaacaa atggcacaat 1200 gcaaagagca gaagttttgg aataaataga ttgaagccat taaattattg gataaaaata 1260 gtttcaggtt gcttttggcc taggttctcc cctcccccca tcactatcca cttcaggaat 1320 aaacattctg aaagttaatt ttacccatat agtgagcact tatttctaag ttgccttatc 1380 aaataccatc tatgttatgt catttaatct cgcagttgcc tgtgcattag agattagcat 1440 caccacttta tatatcctaa tattagtaca tgataaacac tttaagtaat cagcccacaa 1500 gtactcacca agaccttaag cctcccaaag tacacaacat tcttacgttc ctcactacac 1560 atctgtagag tcaaagggac ataaagcctt gttaaagcca gttttgacca gaagcagcaa 1620 tggtctcttc ctgtttgatc tgcatgttaa tgggacaaaa tgatactttc aaggcattga 1680 aaatttatga ttaatcaatc aaatttatga ttaatcaatc cctagtctga ctccagtgag 1740 attcacaaaa ctttcagttt actttatact cccttgcctt cttttgactc acatcatagt 1800 gccagcaagt acttatattt ttgctatttc agttctattt ccataaaatt tattttatca 1860 tcttttctca taaatttgtg ccctctattt ttactcccaa tctgtgtaag atgaacaaat 1920 cttataagac cacatagctg actgtgattt caggtggact ccaggaagga gaaccaaaga 1980 aaactttcag tctttttaag atgaacaaat cttgtaagtc cccacatagc tgactgtgat 2040 ttcaggtgga ctccaggaag gagaaccaaa gaaaagttca agtccaagca gaaaccgtga 2100 ttccttccgg atgatggctc atgagtgcca tttaattggg gtgccacctg ctgtcctcag 2160 caaatcccag ctatatgtat atgttcgcat tacaggctca ttaacctagg ctgacctctg 2220 caaggatctc agaatatttt ctacagagaa catacatgat aatatctgat tttaggacaa 2280 aaaagtaatt ctcaatagca agggaatgga gtagggtaga cagctagtaa ttaaactcac 2340 ttgtgtgtta aaaataaatt aaggaaaaaa gaaaatgaga gaacatatta ctaaataaag 2400 aaagcataca ttaaatattt actatagttt tacactaaga gaataaagga aatgcaataa 2460 agtggcctga aaggtaaagg atgagatgtg taaaagaggc ggggaaagat gtgtcatttt 2520 ttttttacta tgagcagcaa tctgagaaga taaaggaatc gagttatggg cagacatgat 2580 gtttgatcag tgttatttgt tttcaaggcc tgcctacttt tttttcaaat attacaaact 2640 tttgaagtca cattcttttt gttttttgct gtctgttact agatcgcaca ttctgtaaag 2700 gcagggacca tggtatgttg tttatctttg gattctcagt gattgtcata tttatgtttg 2760 ttgaatgaat cttaatccaa gacttgggct ccaggtatct ttccattctg gttccaagga 2820 gggaccttcc tcacagcagg cgtgctgtgt ggtctcacat ctcactccta tatctttccc 2880 tgtctgttac tgccctcagt ggagcccaca gtgaccatct ccccatccag gacagaggcc 2940 ctcaaccacc acaacctgct ggtctgctca gtgacagatt tctatccagc ccagatcaaa 3000 gtccggtggt ttcggaatga ccaggaggag acaaccggcg ttgtgtccac cccccttatt 3060 aggaagggtg actggacctt ccagatcctg gtgatgctgg aaatgactcc ccagcatgga 3120 gacgtctaca cctgccacgt ggagcacccc agcctccaga accccatcac cgtggagtgg 3180 cgtaagggga tattgagttt ctgttactat gggccccaca agacaaaggg cagagctcat 3240 tctgacccat cccttcccat ctcttatccc tgatgtcact actgagctgg gaatcacagg 3300 agactagagc acttcttcct ccatggcaag tgcatcagaa gaatcctgat ctcatcacct 3360 ttccagatgc tagggaaatt actctacata ctgtttctct ggatcccagt cctgatagct 3420 cggagggact gatcattagg gctggtgact gggatcttag ggtttaaggt tatggatgag 3480 ctcctgagga gtggagatct gcttctccac tctctcacct actcactgta cccaaggacc 3540 tattggctgg cctttcccct cccttagggg tggtctgaat ggaggactag tttcctttga 3600 cgccttcacc tcctgaatct cagactggac ttcagctcct cagcagggat gctatggggt 3660 gtggggacaa acactgacac tcaggctctg cttcttaggg gctcagtctg aatctgccca 3720 gagcaagatg ctgagtggca ttggaggctt cgtgctgggg ctcatcttcc tcgggctggg 3780 ccttattatc catcacagga gtcagaaagg tgaggaaccc caagggaaaa ggggaagatg 3840 ggctgtgacc cagaccctct gttcagagag gtcctgtctc tagatgtggc tctttcctcc 3900 tgaccccgag aggaagaaag ctgagctgga ggtgggagga gacaggacaa gattggagga 3960 ggcattggaa tctgatttta ctagttgaaa ggtagccctg tcacacagct cactgataga 4020 gcttattgaa ggacatcctt acctttcatc attgtctcat tggctccttt ccaaaagctt 4080 cctccattaa gagggtcaga gccttggcct ccttgccttc tagtgacaat ttcctttgtt 4140 ttaggggatt ttaaattagg gtgcttaagg ccttgaagga catgggtggg aagagaatat 4200 aactctaatt aagtcacatg tgtcattttc cattggggtg agagagtggc tgtttgtgta 4260 atgagacctt tctctgcata acttcctttt gtaagacctc aagggcctcc accagcaggt 4320 aatatttcag ccgtgatcca gtgtggggag ggcacagatg taagagggaa gagcatgagc 4380 tgagtgtacc tgaccacagt ggtctccgtt catggtatat ttgctgctat gaggatcaag 4440 acttaggggc gaagtttgcc agtttctagg aatctccaga ggctgttccc cagaaccaag 4500 ccttaacttt ggtggcatct tcctgtgaaa tgtgaagcca gaaccacagc ttaaatgtta 4560 gacactagga tgatgcccac tttgtgccac atgttggtgg ctactgcctg taggcatttt 4620 ccagtgactg aaagaggctg ctagtggtag ggatgaggta tcatccaatt tcctaaaaag 4680 accgaaccct tcatattccc cagaagagta acagctgttc ccccacctcc ctcacatctg 4740 catcaagctg aagttctgtg tcttcatgag ctgatttcac ctttgcacag atcttggggg 4800 aggtgatgac aatacactct ggaccccagc tttgtctgtc tgaagctgca gggggcccct 4860 gaggggtggg ggagatggca ggcccaccag cgtaccctgt gctgatcatc cctcttctct 4920 cttctccagg gctcctgcac tga 4943 //