Dbfetch
ID LN854611; SV 1; linear; genomic DNA; STD; HUM; 4832 BP. XX AC LN854611; XX DT 04-JUN-2015 (Rel. 125, Created) DT 04-JUN-2015 (Rel. 125, Last updated, Version 1) XX DE Homo sapiens partial HLA-DQB1 gene for MHC class II antigen, allele DE HLA-DQB1*06:new, cell line DKMS-LSL-DQB1-473 XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4832 RA Albrecht V.; RT ; RL Submitted (13-MAY-2015) to the INSDC. RL Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. 34, Saxony, RL 01307 Dresden, GERMANY. XX RN [2] RX DOI; https://doi.org/10.1111/tan.13057. RX PUBMED; 28547825. RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A., RA Winkler S., Lange V., Bohme I., Schmidt A.H.; RT "Dual redundant sequencing strategy: Full-length gene characterisation of RT 1056 novel and confirmatory HLA alleles"; RL HLA. -:1-9(2017). XX DR MD5; 57f836f77a9d821841a5f0a1f82d8946. DR IMGT/HLA; HLA-DQB1*06:186; HLA13924. XX FH Key Location/Qualifiers FH FT source 1..4832 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /cell_line="DKMS-LSL-DQB1-473" FT /db_xref="taxon:9606" FT CDS join(<1..270,2820..3101,3611..3721,4186..4209,4819..4832) FT /codon_start=3 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /product="MHC class II antigen" FT /function="antigen presenting molecule" FT /db_xref="GOA:A0A0G4PZ10" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A0G4PZ10" FT /protein_id="CRL52707.1" FT /translation="DFVYQFKGMCYFTNGTERVRLVTRHIYNREEYARFDSDVGVYRAV FT TPQGRPVAEYWNSQKEVLERTRAELDTVCRHNYEVGFRGILQRRVEPTVTISPSRTEAL FT NHHNLLVCSVTDFYPGQIKVQWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRG FT DVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGP FT QGPPPAGLLH" FT exon 1..270 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=2 FT intron 271..2819 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=2 FT exon 2820..3101 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=3 FT intron 3102..3610 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=3 FT exon 3611..3721 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=4 FT intron 3722..4185 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=4 FT exon 4186..4209 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=5 FT intron 4210..4818 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=5 FT exon 4819..4832 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:new" FT /number=6 XX SQ Sequence 4832 BP; 1235 A; 1105 C; 1139 G; 1353 T; 0 other; aggatttcgt gtaccagttt aagggcatgt gctacttcac caacgggacg gagcgcgtgc 60 gtcttgtaac cagacacatc tataaccgag aggagtacgc gcgcttcgac agcgacgtgg 120 gggtgtaccg ggcggtgacg ccgcaggggc ggcctgttgc cgagtactgg aacagccaga 180 aggaagtcct ggagaggacc cgggcggagt tggacacggt gtgcagacac aactacgagg 240 tggggttccg cgggatcttg cagaggagag gtgagcgtcg tcgcccctcc gtgaggcgca 300 cccttggccg ggaccccgag tctctgtgcc gggaggggcg atgggggcga ggtctctgaa 360 atctgagccc agttcattcc accccagggg aaaggaggcg gcggcggggt ggtgggggca 420 ggtgcatcgg aggggcgggg acctagggca gagcaggggg acaagcagag ttggccaggc 480 tgcctagtgt cccccccagc ctccccgtcc gtcggcctcg tcctctgctc tgcacgtttc 540 tcgcctcgtg ccttatgcgt ttgcctcctc gtgccttacc ttcgctaagc agttctctct 600 gcccccagtg cccaccctct tcccctgccc gccggcctcg ctagcactgc cccacccagc 660 aaggcccacg tgcgcagctt gcgccgcagg aagcttcagg cttggcctgg tggagttagg 720 gctgccccac aactgcgcgc agggcatcca gcaattacag ttgcaaaata agatattttg 780 actttttggc ttcaaatcat tattcatcgt aattctgttt tcttaaatgg ctaccactaa 840 tggcggagat ctttgaggcg agagactgtt taattattgc atgcctggta cctgacacat 900 tgactggtat gtggtgtgag ctcaatgatc ttctgttaaa ttcatgaata aatgtactca 960 gctgccaatc cagttaggtt caagaaaaaa acagaggctt acaaatgaac tttatcaatt 1020 attttctatc attttgctta atgctttcaa gtaaactctt actgacttgg atcttaatag 1080 aatttgtgaa tacaaagtct gaggaaaatg tgtttgctaa aaataaaaac aatgcttgaa 1140 tgatgttgta aggcagagtt ttaatttctt agaaaagctg aacaaatagc actatgcaaa 1200 gatcagaagt ttgggaataa ataggttgaa gctattaaat tattggataa aaatagtttc 1260 aggttgcttt tggcctaggt tatcccctcc tcccatcact atccacttca ggaataaaca 1320 ttctgaaagt caattttacc cattcaggaa gcacttattt ctagacagtt gccttatcaa 1380 ataccatcta tattatgtca tttaatctcg cagctacctg tgcattagag attagcatca 1440 ccactttata tatcctaata ttggtacatg ataaacactt taagtaatca gcccacaatt 1500 actcaccaag atcttaagcc tcccaaagta cacaacattc ttatgttcct cactacacat 1560 ctgtagagtc taagggatgt aaggccttgt taaagccagt tttgaccaga agcagcaatg 1620 agtctattcc tgtttgttct ccatgttaat gcggcattga aaattcatga ttaatcaatc 1680 cctagtctga ccccagtgtt atctatgcag gttcacaaaa cttttagttt gctttacact 1740 cccttgcctt cttttgactc acatcctaat gccagcaagt acttatattt ttgctatttc 1800 agttttattt ccatgaaatt tattttatca tcttttctca taaatttgtg ccctctattt 1860 ttactcccag tctgttgaag atgaacaaat cttataaggc cacatagctg actctgattt 1920 cagttggcct ccaggaagga gaacctaaag aaaagttcaa gtccaagcag aaaccatgat 1980 tccttccgga tgatggctca agagtgccat ttaattgggg tgccacctgc tgacctcagc 2040 aaatcccagt tatatgtata tgttcacatt acaggctcat tagcccaggc cgacctctgc 2100 acggatctca gaatattttc tgtggagaac atacacgata atgtctgatt tcagaacaag 2160 aaagtaattg tcaatagcaa ggaaatggag tagggtagac agctagtaat taaactcact 2220 tgtgcgttaa aaagaaatta aggaaaaaaa gaaaatgaga gaacatatta ctaaataaag 2280 aaagcacaca ttaaatattt gctatagttt cacactaaga gaataaagga aatgtgataa 2340 agtggcctaa aaggtaaagg atgagatgtg taaaagaggc ggggaaagat gtgtcatttt 2400 ttttactatg agcagcaatc tgagaagata aaggaattga gttgtggaca aacatgatgt 2460 ttgatcaagg gttatttgtt ttgaaggcct gcctactttt ttttcaaata ttacaaactt 2520 ttgaaataac attctacttt tttttcaaat attacaaact tttgaaataa cattcttttt 2580 gttttttgct gtctgttact agattgcaca ttctataaat gcagggacca tggtatgtta 2640 tttatctttg aattctcagt gattgtcaaa tttatatttg ttgaatgaac cttaatccaa 2700 gacttggact ccaggtatct ttccactctg gtccaaggag ggatccttcc tcatggtaga 2760 cgtggtgtgt gttctcacat ctcactccta tgtcttttcc tgtctgttac tgccctcagt 2820 ggagcccaca gtgaccatct ccccatccag gacagaggcc ctcaaccacc acaacctgct 2880 ggtctgctcg gtgacagatt tctatccagg ccagatcaaa gtccagtggt ttcggaatga 2940 tcaggaggag acagccggcg ttgtgtccac cccccttatt aggaatggtg actggacttt 3000 ccagatcctg gtgatgctgg aaatgactcc ccagcgtgga gatgtctaca cctgccacgt 3060 ggagcacccc agcctccaga gccccatcac cgtggagtgg cgtaagggga tattgagttt 3120 ctgttactat gggcccacaa gacaaagagc tccttctgac ccattccttc ccatctctta 3180 tccctgatgt cactactgag ctgggaatca caggagacta gagcacctct tgctccatgg 3240 caagtgcatc agaagaatcc tggtctcatc acctttccag atgctaggga aattactctg 3300 catactgttg ctctgaatcc cagtcctgat agctctgagg gactgattct tagggctggt 3360 gactgggatc ttagggtcta aggttatgga tgagttcttg aagagcagag atttgcttcc 3420 ccactctctc acctattcac tgtatccaag gacctattgg ctggtctttc ccctccttag 3480 gggtggtctg aatggagaac tagtttcctt tgatgccttc accttctgca cctcagactg 3540 gacttcaact cctcagcagg gatgctatgg ggtgtgggga caaacacaga cactcagttc 3600 tgctctttag gggctcagtc tgaatctgcc cagagcaaga tgctgagtgg cgttggaggc 3660 ttcgtgctgg ggctgatctt ccttgggctg ggccttatca tccgtcaaag gagtcagaaa 3720 ggtgaggaac cccaggggaa aaggggaaga tgggctgtga cccagaccct ctgttcagag 3780 tggtcctgtc tgtagattag ctctttcctc ctcaccctga gaggaagtgc gaggagacag 3840 gacaagatgg gaggaggcat tggaatctga ttttactggt tgaaaggtag cgctgtcaca 3900 gagctgactg atagagctta ttccagggca tccttaccat tcatcattgt ctcactggct 3960 cctttccaaa agcttcctcc attaagaggg tcagagcctc aacttccttt ctttctagtg 4020 acaatttcct ttgttttagg ggattttaaa ttagggtgct gaaggcctgg aagaacatgg 4080 gtgggaagag aatgtaactc taagtcatgt gtgtcatttt cctttggggt gagagagtgg 4140 ctgtttgtgt aatgagacct ttctctgcat aacttccttt tgtaagacct caagggcctc 4200 caccagcagg taatatttca gccatgatcc agtgtgggta ggcacaggta taagagggaa 4260 gagcatgagc tgagtgtacc tgaccacagt ggtccatgtt catggcctat ttgctgctat 4320 gaggatcaag acttagggga gaagtttgcc agtttctagg aatctccaga cattgttccc 4380 cagaaccaag ccttaacttt ggtggcatct tcttgtgaaa tgtggagcca gaaccacagc 4440 ttaaatgtta gacactagga tgatgcccac tttgtgccac atgatggtgg ctactgcctg 4500 taggcatttt ccagtgactg aaagaggctg ctagtggtcg ggaagagata tcatccaatt 4560 tcctaaaaag actgaaccct tcatattccc cagaagaata acagctgttc cccacctccc 4620 tcacatctgc atcaagctga agttctgtgt cctcatgagc tgatttcacc tttgcacaga 4680 tcttggggga ggtgatgaca atacaccctg gacctcaact ttctctgtct gaagctgcag 4740 ggggccgctg aagggtgggg gagatggcag gcccaccagg ataccctgtg ctgatcaatg 4800 ctcttctctc ttctccaggg cttctgcact ga 4832 //