Dbfetch
ID LN600072; SV 1; linear; genomic DNA; STD; HUM; 2895 BP. XX AC LN600072; XX DT 15-SEP-2014 (Rel. 122, Created) DT 15-SEP-2014 (Rel. 122, Last updated, Version 1) XX DE Homo sapiens partial HLA-C gene for HLA class I antigen, allele HLA-C*04, DE isolate DKMS-LSL-C-232, exons 1-8 XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-2895 RA Albrecht V.; RT ; RL Submitted (20-AUG-2014) to the INSDC. RL Albrecht V., Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str. RL 34, Saxony, 01307 Dresden, GERMANY. XX RN [2] RX DOI; https://doi.org/10.1111/tan.13057. RX PUBMED; 28547825. RA Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A., RA Winkler S., Lange V., Bohme I., Schmidt A.H.; RT "Dual redundant sequencing strategy: Full-length gene characterisation of RT 1056 novel and confirmatory HLA alleles"; RL HLA. -:1-9(2017). XX DR MD5; dc9bab8b3ebcce0e4f267141fd2bf773. DR IMGT/HLA; HLA-C*04:187; HLA12704. XX FH Key Location/Qualifiers FH FT source 1..2895 FT /organism="Homo sapiens" FT /chromosome="6" FT /isolate="DKMS-LSL-C-232" FT /mol_type="genomic DNA" FT /cell_type="blood cells" FT /db_xref="taxon:9606" FT CDS join(<1..73,204..473,720..995,1583..1858,1980..2099, FT 2539..2571,2679..2726,2891..2895) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /product="HLA class I antigen" FT /db_xref="GOA:A0A090KM72" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:A0A090KM72" FT /protein_id="CEF48062.1" FT /translation="MRVMAPRTLILLLSGALALTETWAGSHSMRYFSTSVSWPGRGEPR FT FIAVGYVDDTQFVRFDSDSASPRGEPREPWVEQEGPEYWDRETQKYKRQAQADRVNLRK FT LRGYYNQSEDGSHTLQRMFGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWKPSSQPTIPIVGIVAGLAVLAVLAVLGAMVAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT exon 1..73 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=1 FT intron 74..203 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=1 FT exon 204..473 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=2 FT intron 474..719 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=2 FT exon 720..995 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=3 FT intron 996..1582 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=3 FT exon 1583..1858 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=4 FT intron 1859..1979 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=4 FT exon 1980..2099 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=5 FT intron 2100..2538 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=5 FT exon 2539..2571 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=6 FT intron 2572..2678 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=6 FT exon 2679..2726 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=7 FT intron 2727..2890 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=7 FT exon 2891..2895 FT /gene="HLA-C" FT /allele="HLA-C*04" FT /number=8 XX SQ Sequence 2895 BP; 547 A; 826 C; 927 G; 595 T; 0 other; atgcgggtca tggcgccccg aaccctcatc ctgctgctct cgggagccct ggccctgacc 60 gagacctggg ccggtgagtg cggggttggg agggaaacgg cctctgggga gaggagcgag 120 gggcccgccc ggcgagggcg caggacccgg ggagccgcgc agggaggagg gtcgggcggg 180 tctcagccac tcctcgtccc caggctccca ctccatgagg tatttctcca catccgtgtc 240 ctggcccggc cgcggggagc cccgcttcat cgcagtgggc tacgtggacg acacgcagtt 300 cgtgcggttc gacagcgact ccgcgagtcc aagaggggag ccgcgggagc cgtgggtgga 360 gcaggagggg ccggagtatt gggaccggga gacacagaag tacaagcgcc aggcacaggc 420 tgaccgagtg aacctgcgga aactgcgcgg ctactacaac cagagcgagg acggtgagtg 480 accccggccc ggggcgcagg tcacgacccc tccccatccc ccacggacgg cccgggtcgc 540 cccgagtctc cccgtctgag atccaccccg aggctgcgga acccgcccag accctcgacc 600 ggagagagcc ccagtcacct ttacccggtt tcattttcag tttaggccaa aatccccgcg 660 ggttggtcgg gactggggcg gggctcgggg gaccgggctg accacggggg cggggccagg 720 gtctcacacc ctccagagga tgtttggctg cgacctgggg ccggacgggc gcctcctccg 780 cgggtataac cagttcgcct acgacggcaa ggattacatc gccctgaacg aggatctgcg 840 ctcctggacc gccgcggaca cggcggctca gatcacccag cgcaagtggg aggcggcccg 900 tgaggcggag cagcggagag cctacctgga gggcacgtgc gtggagtggc tccgcagata 960 cctggagaac gggaaggaga cgctgcagcg cgcgggtacc aggggcagtg gggagccttc 1020 cccatctccc gtagatctcc cgggatggcc tcccacgagg aggggaggaa aatgggatca 1080 gcgctagaat atcgccctcc cttgaatgga gaatgggatg agttttcctg agtttcctct 1140 gagggccccc tctgctctct aggacaatta agggatgaag tccttgagga aatggagggg 1200 aagacagtcc ctggaatact gatcaggggt cccctttgac cactttgacc actgcagcag 1260 ctgtggtcag gctgctgacc tttctctcag gccttgttct ctgcctgacg ctcaatgtgt 1320 ttgaaggttt gattccagct tttctgagtc cttcggcctc cactcaggtc aggaccagaa 1380 gtcgctgttc ctccctcaga gactagaact ttccaatgaa taggagatta tcccaggtgc 1440 ctgtgtccag gctggcgtct gggttctgtg cccccttccc caccccaggt gtcctgtcca 1500 ttctcaggat ggtcacatgg gcgctgttgg agtgtcgcaa gagagataca aagtgtctga 1560 attttctgac tcttcccatc agaacaccca aagacacacg tgacccacca tcccgtctct 1620 gaccatgagg ccaccctgag gtgctgggcc ctgggcttct accctgcgga gatcacactg 1680 acctggcagt gggatgggga ggaccaaact caggacaccg agcttgtgga gaccaggcca 1740 gcaggagatg gaaccttcca gaagtgggca gctgtggtgg tgccttctgg agaagagcag 1800 agatacacgt gccatgttca gcacgagggg ctgccggagc ccctcaccct gagatggagt 1860 aaggaggggg atgaggggtg atgtgtcttc tcagggaaag cagaagtcct ggagcccttc 1920 agccgggtca gggctgaggc ttggaggtca gggcccctca ccttcccctc ctttcccaga 1980 gccgtcttcc cagcccacca tccccatcgt gggcatcgtt gctggcctgg ctgtcctggc 2040 tgtcctagct gtcctaggag ctatggtggc tgttgtgatg tgtaggagga agagctcagg 2100 tagggaaggg gtgaggagtg gggtctgggt tttcttgttc cactgggagt ttcaagcccc 2160 aggtagaagt gtgccccacc tcgttactgg aagcaccatc cacacatggg ccatcccagc 2220 ctgggaccct gtgtgccagc acttactctg ttgtgaagca catgacaatg aaggacagat 2280 gtatcacctt gatgattatg gtgttggggt ccttgattcc agcattcatg agtcagggga 2340 aggtccctgc taaggacaga ccttaggagg gcagttgctt cagaacccac agctgctttc 2400 cccgtgtttc ctgatcctgc cctgggtctg cagtcatagt tctggaaact tctcttgggt 2460 ccaagactag gaggttcccc taagatcgca tggccctgcc tcctccctgt cccctcacag 2520 ggcattttct tcccacaggt ggaaaaggag ggagctgctc tcaggctgcg tgtaagtgat 2580 ggcggtgggc gtgtggagga gctcacccac cccataattc ctcttgtccc acatctcctg 2640 cgggctctga ccaggtcttt ttttttgttc taccccagcc agcaacagtg cccagggctc 2700 tgatgagtct ctcatcgctt gtaaaggtga gattctgggg agctgaagtg gtcgggggtg 2760 gggcagaggg aaaaggccta ggtaatgggg atcctttgat tgggacgttt cgaatgtgtg 2820 gtgagctgtt cagagtgtca tcacttacca tgactgacct gaatttgttc atgactattg 2880 tgttctgtag cctga 2895 //