Dbfetch < EMBL-EBI

Dbfetch

ID   LK021941; SV 2; linear; genomic DNA; STD; HUM; 1625 BP.
XX
AC   LK021941;
XX
DT   19-MAY-2014 (Rel. 120, Created)
DT   18-SEP-2014 (Rel. 122, Last updated, Version 3)
XX
DE   Homo sapiens partial HLA-A gene for MHC class I antigen, isolate
DE   DKMS-LSL-A-122, allele HLA-A*03, exons 2-8
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   revised by [3]
RA   Albrecht V.;
RT   ;
RL   Submitted (16-APR-2014) to the INSDC.
RL   Albrecht V., Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str.
RL   34, Saxony, 01307 Dresden, GERMANY.
XX
RN   [2]
RX   DOI; https://doi.org/10.1111/tan.13057.
RX   PUBMED; 28547825.
RA   Albrecht V., Zweiniger C., Surendranath V., Lang K., Schofl G., Dahl A.,
RA   Winkler S., Lange V., Bohme I., Schmidt A.H.;
RT   "Dual redundant sequencing strategy: Full-length gene characterisation of
RT   1056 novel and confirmatory HLA alleles";
RL   HLA. -:1-9(2017).
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RN   [3]
RP   1-1625
RA   Albrecht V.;
RT   ;
RL   Submitted (10-SEP-2014) to the INSDC.
RL   Albrecht V., Research and Development, DKMS LIFE SCIENCE LAB, Fiedler Str.
RL   34, Saxony, 01307 Dresden, GERMANY.
XX
DR   MD5; 2d6e683cc39589a826b8b37c61c1efd0.
DR   IMGT/HLA; HLA-A*03:204; HLA12400.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1625
FT                   /organism="Homo sapiens"
FT                   /chromosome="6"
FT                   /isolate="DKMS-LSL-A-122"
FT                   /mol_type="genomic DNA"
FT                   /cell_type="blood cells"
FT                   /db_xref="taxon:9606"
FT   CDS             join(<1..270,371..646,747..1022,1123..1239,1341..1372,
FT                   1473..1520,1621..>1625)
FT                   /codon_start=3
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03"
FT                   /product="MHC class I antigen"
FT                   /db_xref="GOA:A0A060VCY6"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:A0A060VCY6"
FT                   /protein_id="CDQ51622.2"
FT                   /translation="SHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRME
FT                   PRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTMQVMYGCDVGS
FT                   DGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTC
FT                   VEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGED
FT                   QTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTI
FT                   PIVGIIAGLVLLGAVITGAVVAAVMWRRKSSVEKEGVTLRLQAVTVPRALMCPSQLVKC
FT                   "
FT   exon            1..270
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03"
FT                   /number=2
FT   gap             271..370
FT                   /estimated_length=unknown
FT   exon            371..646
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03"
FT                   /number=3
FT   gap             647..746
FT                   /estimated_length=unknown
FT   exon            747..1022
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03"
FT                   /number=4
FT   gap             1023..1122
FT                   /estimated_length=unknown
FT   exon            1123..1239
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03"
FT                   /number=5
FT   gap             1240..1339
FT                   /estimated_length=unknown
FT   exon            1341..1372
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03"
FT                   /number=6
FT   gap             1373..1472
FT                   /estimated_length=unknown
FT   exon            1473..1520
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03"
FT                   /number=7
FT   gap             1521..1620
FT                   /estimated_length=unknown
FT   exon            1621..1625
FT                   /gene="HLA-A"
FT                   /allele="HLA-A*03"
FT                   /number=8
XX
SQ   Sequence 1625 BP; 208 A; 298 C; 351 G; 168 T; 600 other;
     gctcccactc catgaggtat ttcttcacat ccgtgtcccg gcccggccgc ggggagcccc        60
     gcttcatcgc cgtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg       120
     cgagccagag gatggagccg cgggcgccgt ggatagagca ggaggggccg gagtattggg       180
     accaggagac acggaatgtg aaggcccagt cacagactga ccgagtggac ctggggaccc       240
     tgcgcggcta ctacaaccag agcgaggccg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn gttctcacac catgcaggtg atgtatggct gcgacgtggg gtcggacggg       420
     cgcttcctcc gcgggtaccg gcaggacgcc tacgacggca aggattacat cgccctgaac       480
     gaggacctgc gctcttggac cgcggcggac atggcggctc agatcaccaa gcgcaagtgg       540
     gaggcggccc atgaggcgga gcagttgaga gcctacctgg atggcacgtg cgtggagtgg       600
     ctccgcagat acctggagaa cgggaaggag acgctgcagc gcacggnnnn nnnnnnnnnn       660
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       720
     nnnnnnnnnn nnnnnnnnnn nnnnnnaccc ccccaagaca catatgaccc accaccccat       780
     ctctgaccat gaggccaccc tgaggtgctg ggccctgggc ttctaccctg cggagatcac       840
     actgacctgg cagcgggatg gggaggacca gacccaggac acggagctcg tggagaccag       900
     gcctgcaggg gatggaacct tccagaagtg ggcggctgtg gtggtgcctt ctggagagga       960
     gcagagatac acctgccatg tgcagcatga gggtctgccc aagcccctca ccctgagatg      1020
     ggnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnagctgtct tcccagccca      1140
     ccatccccat cgtgggcatc attgctggcc tggttctcct tggagctgtg atcactggag      1200
     ctgtggtcgc tgccgtgatg tggaggagga agagctcagn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1320
     nnnnnnnnnn nnnnnnnnna tagaaaagga gggagttaca ctcaggctgc aannnnnnnn      1380
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1440
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngcagtgac agtgcccagg gctctgatgt      1500
     gtccctcaca gcttgtaaag nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1560
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1620
     tgtga                                                                  1625
//