Dbfetch
ID LC257873; SV 1; linear; genomic DNA; STD; HUM; 7679 BP. XX AC LC257873; XX DT 26-MAR-2019 (Rel. 140, Created) DT 26-MAR-2019 (Rel. 140, Last updated, Version 1) XX DE Homo sapiens HLA-DQB1 gene for HLA class II histocompatibility antigen DQ DE beta chain precursor, complete cds, allele: DQB1*06:01:01:02. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-7679 RA Shiina T., Suzuki S.; RT ; RL Submitted (10-APR-2017) to the INSDC. RL Contact:Takashi Shiina Tokai University School of Medicine, Molecular Life RL Science; Shimokasuya 143, Isehara, Kanagawa 259-1143, Japan XX RN [2] RC Publication Status: Online-Only DOI:10.3389/fimmu.2018.02294 RX DOI; .3389/fimmu.2018.02294. RX PUBMED; 30337930. RA Suzuki S., Ranade S., Osaki K., Ito S., Shigenari A., Ohnuki Y., Oka A., RA Masuya A., Harting J., Baybayan P., Kitazume M., Sunaga J., Morishima S., RA Morishima Y., Inoko H., Kulski J.K., Shiina T.; RT "Reference Grade Characterization of Polymorphisms in Full-Length HLA Class RT I and II Genes With Short-Read Sequencing on the ION PGM System and RT Long-Reads Generated by Single Molecule, Real-Time Sequencing on the PacBio RT Platform"; RL Front Immunol 9:2294-2294(2018). XX DR MD5; bfed77e0ca99035b1579391155c5724b. XX FH Key Location/Qualifiers FH FT source 1..7679 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT CDS join(1234..1342,2785..3054,5588..5869,6375..6485, FT 6969..6992,7603..7616) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQB1" FT /allele="DQB1*06:01:01:02" FT /product="HLA class II histocompatibility antigen DQ beta FT chain precursor" FT /db_xref="GOA:U3PXY2" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:U3PXY2" FT /protein_id="BBD34191.1" FT /translation="MSWKKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQFKA FT MCYFTNGTERVRYVTRYIYNREEDVRFDSDVGVYRAVTPQGRPDAEYWNSQKDILERTR FT AELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQHGDVYTCHVEHPSLQSPITVEWRA FT QSESAQNKMLSGIGGFVLGLIFLGLGLIIRQRSQKGPQGPPPAGLLH" XX SQ Sequence 7679 BP; 2039 A; 1710 C; 1781 G; 2149 T; 0 other; aagaggagcc tgataagtta tgtttattta taaaaacaca ttgatgtaga tatgtccatg 60 agaaactgtt aaataaaaaa ttatatagaa ttgaaaaaaa ccacattgat acctctgcca 120 cttgggattt gatgtttagg gctggcacag tacaatctgt gactctaaac attttctcca 180 tcattaatac tattcaggac ctaggaaatg cttctccaca gcttttgctc tctctcctca 240 aatctagaca tgactatgtc tgaatactgt aaaggtttgt gtattgtgcc tttgctgata 300 tcagatgcac ctatttcatg gtgcagagag gatttaaaca actgaagaac tttaaaaaga 360 aatgtcaact taattaactt ttcaaatact ttcactcaaa gatcataaat agaatatatt 420 cttgcatgat gaagaatcat ttaccagcag gggtgggtgt caattttttt tggcttgttt 480 tcttattcca cataccaacc tgatagttac acataacagt ggaggagcct tttgtaatat 540 taaacaagac aaattaatct taaatttgta tatgtgaaga tctagatgta aaatgcatga 600 aacatgaccc acattttaca aagaggagcc tggggcaaaa ataaattcag taatttgttg 660 actctcctaa agcacattag tggtggaact gcaactcacc attaattcct tctaagaact 720 ttgctcttct caccaaaact taaggctctt cagcgtgtct aagacaacag cagtaaaaat 780 ttctatgaca gcaattttct ctcccctgaa atatgatccc cacttaattt gctttattaa 840 aaatcccaag tataataaca actggttttt aatcaatatt acagagatgt ttactgttga 900 atcgcatttt tcttttgcct ctcaaaatcc ctgaggcact cattcttcag cttttctata 960 attgagagaa aattttcacc tcaaatgttc atccagtgca atttgaagac atcacagtgc 1020 caggcactgg actgagaacc ttcaccaaaa aaatgtctgc ccagagacag atgaggtcct 1080 tcagctccag tgctgattgg ttcttttcca aaggcccatc taatcctacc acgcacggaa 1140 atatccacag gtttttattc tttctgccag ctacatcaga tccatcaggt ccgagctgtg 1200 ttgactacca ctacttttcc ctttgtctca attatgtctt ggaagaaggc tttgcggatc 1260 cccggaggcc ttcgggcacc aactgtgacc ttgatgctgg cgatgctgag caccccagtg 1320 gctgagggca gagaccctcc cggtaagtgc agggcagctg ctctccagag ccgccactct 1380 gggaacaggc attccttggg ctggggtagg gggatggtga tctccatgat ctcggacaca 1440 atctttcatc aacatttcct ctcttttggg aaagaaagct atgttgcatt cccatttatc 1500 ttttagtgat gaggtgagga caatccaatc cccatcctac aggcttaagc ctggaagaag 1560 aggagagagg agaggaaaga ggagataaag tgtacattta ctaccagtga taggacaaag 1620 tgagcatggg attatttttg aaaatatgaa tttctccaaa gacacagcag gatttgccgt 1680 ttaggcgtgc cccaagattt tgcctggact aaatattatg ggatcctgca ttgggaaata 1740 caaggcagca atgatgtctg tagtctccgt atttgaggaa aattagtctg tattcccaac 1800 tgactggagc gtttgtggag gcaaaatctt ggtactgagg gaagctgact ggctgaccac 1860 agagagggag tcttcaggtt tcactgattt atgggcaaat ggtgacttga gtgggattca 1920 gaggcccgag ttgatggtgg actaaattta gaagaaagga ggatgcaaag aggggaaata 1980 acacaattgt gaaaccactc acttcagaca cagaacaata ctttatgtaa attctctctc 2040 cttctaacat cctgtgtgta gatatcatga ttttccttta cacaattata cttgtgatat 2100 ggatattctg ttacataacc tgctcaagct ggtgactgcc acagtttaat tggaatctag 2160 tttatcaaat tcaaaagctt gtgctctttc catgaataaa tgtttctatc taggactcag 2220 aggtgtaggt cctttctaac atagaaggga gtgaacctca acgggacttg gtagggtaaa 2280 tccaggcatg ggaaggaagg tattttaccc agggaccaag agaatacgcg tatcagaacg 2340 aggacaggct taattcctgg acctgtctcg tcattccctt gaactctcaa gtttttgtgg 2400 attaactata tctctgaggt atccaggagc ttcatgaaaa atgggatttc atgcgagaac 2460 gccctgatcc ctctaagtgt agaggtccat gtaaaatcag cccgactgcc tcttcgctga 2520 gttcactggc tcaggcaggg acagggcttt cctccctttc ctggctgtag gaaggcagat 2580 tcccgaagcc cccagagagg gcgggcaggg ctgagcagag ccgccgggag gatcccagtt 2640 ctggagcgcc agacacgggc aggcgggaac tggaggtcgc gcgggcggtt ccacagctcc 2700 gggccgggtc agggcggcgg ctgcgggggc ggccgggcta gggccaggct ggggcctgac 2760 tgaccggccg gtgattcccc gcagaggatt tcgtgctcca gtttaaggcc atgtgctact 2820 tcaccaatgg gacggagcgc gtgcgttatg tgaccagata catctataac cgagaggagg 2880 acgtgcgctt cgacagcgac gtgggggtgt atcgggcggt gacgccgcag gggcggcctg 2940 acgccgagta ctggaacagc cagaaggaca tcctggagag gacccgagcg gagttggaca 3000 cggtgtgcag acacaactac gaggtggcgt tccgcgggat cttgcagagg agaggtgagc 3060 gtggttgacc ctccgtgagg cgcatccttg gccgggaccc cgagtctctg tgccgggagg 3120 ggcgatgggg gcgcggcctc tgaaatctga gcctcgttca ttccacgcca ggagacagga 3180 ggcggcggag ggggtggtgg gggcaggtgc accggaggag cggggaccta gggcagagca 3240 gggggacaag cagagttgac taggctgcct agtgtccccc cagcctcccc gtccgtcggc 3300 ttcgtcctct gctctgcagg tttctcgcct tctgccttgt gcgtttgcct cctcgtgcct 3360 tacctttact aagcagttct ctctgccccc agtgcccacc ctcttcccct gcccgcctgc 3420 cccgctagta ctgccccacc cagcaaggcc cacgtacgca gctcgcgcct caggaagctt 3480 caggcttggc ctggtggagt tagggctgcc ccacaactgc gctcagggca tccagcaatt 3540 acagttgcga aataagatat tttgactttt tggcttcaaa tcattattca tcgtaattct 3600 gttttcttaa atggctatca ctcatggcgg agatctttga ggcgagagac tgtttaatta 3660 ttgcatgctt ggtacctgac acattgactg gtatgtggta tgagctcaat gatcttccgt 3720 taaattcatg aataaatgta ctcagctgcc aatccattta ggttcgagaa aaaacagagg 3780 cttacaaatg gacttaatta attactttct atcattttgc ttaatgcttc aaagtaaact 3840 cttattgact tggatcttaa tagaatttgt gaatacaaag tctgaggaaa aaagtgtttg 3900 ctaaaaataa aaacagtgct tgaatgatgt tgtaaggcag agttttaatt tcttagaaaa 3960 gctgaacaaa tggcacaatg caaagagcag aagtttggga ataaataggt tgaagccatt 4020 aaattattgg ataaaaatag tttcaagttg cttttggcct aggttctccc cttcccccat 4080 cactatccac ttcaggaata aacattctga aagtcaattt tacccattca ggtggcactt 4140 atttctagac agttgcctta tcaaatacca tatatgttat gtcatttaat ctcacagtta 4200 cctgtgcatt agagattagc atcaccactt tgtatatgct aatattggta catgataaac 4260 actttaagta atcaacccac aattactcac caagacctta agcctcccaa agtatacaac 4320 attcttatgt tcctcactgc acatctgtag agtctaagag atgtaaggcc ttgttaaagc 4380 cagttttgac cagaagcagc aatgagtcta ttcctgtttg ttctccatgt taatggggca 4440 ttgaaaattc actgattaat caatccctag tctgacccca gtgttaccta tgcaggttca 4500 caaaactttc agtttacttt atactccctt gccttctttt gactcacaac ctaatgccag 4560 caagtactta tatttttgct atttcagttc tatttccata aaatttattt tatcatcttt 4620 tctcataaat ttgcgccctc tatttttact cccagtctgt ttaagatgaa caaatcttat 4680 aaggccacat aggtgactgt gatttcagtt ggactccagg aaggagaacc tgaagaaaag 4740 ttcaagtcca agcagaaact gtgatttctt ccggatgatg gctcaagagt gccgtctaat 4800 tggggtgcaa cctgctgacc tcagcaaatc ccagttatat gtatatgttc acattacagg 4860 ctcattaacc caggcagacc tctgcacaga tctcagaata ttttctatag agaacgtaca 4920 tgataatgtc tgatttcaga acaagaaagt aattctcaat accaaggaaa tggagtgggg 4980 tagacagcta gtaattaaac tcacttgtgc gttaaaaaga aattaaggaa aaaaagaaaa 5040 tgagagaaca tattactaaa taaggaaagc acacattaaa tatttgctat agtttcacac 5100 taagagaata aaggaaatgc aataaagtgg cctgaaaagt aaaggatgag atgtgtaaag 5160 aggcggggaa agatgtgtca ttttttttac tatgagcagc aatctgagaa gataaaggaa 5220 tgggcaaacg tgatgtttga tcagtgttat ttgttttcaa ggcctgccta cttttttttt 5280 caaatattac aaatttttga agtaacattc tttttgtttt ttgctgtctg ttactagatt 5340 ctataaagta aattctataa agtaaattat gttacacatt ctataaaggc agggaccatg 5400 gtatgttgtt tatctttgga ttctcagtga ttgtcaaatt tatatttgtt gaatgaacct 5460 tgatccaaga cttggactcc aggtatcttt ccactctggt tccaaggagg gaccttcctc 5520 atggtggacg tgctgtgtgg tctcacatct cactcctatg tcttttcctg tctgttactg 5580 ccctcagtgg agcccacagt gaccatctcc ccatccagga cagaggccct caaccaccac 5640 aacctgctgg tctgctcggt gacagatttc tatccaggcc agatcaaagt ccggtggttt 5700 cggaatgacc aggaggagac agctggcgtt gtgtccaccc cccttattag gaacggtgac 5760 tggaccttcc agatcctggt gatgctggaa atgactcccc agcatggaga cgtctacacc 5820 tgccacgtgg agcaccccag cctccagagc cccatcaccg tggagtggcg taaggggata 5880 ttgagtttct gttactatgg gccccacaag acaaagagct ccttctgatc cattccttcc 5940 catctcttat ccctgatgtc actactgagc tgggaatcac agaagactag acatctcttg 6000 ctccatggca agtgcatcag aagaatcctg atctcatcac ctttccagat gctagggaaa 6060 ttactctacg tactgttgct ctagatccca gtcccgacag ctctcaggga ctgattctta 6120 gggctggtga ttgagatctt agggtctaag gttatggatg agttcctgag gagcagagac 6180 ttacttccct actctctcac ctactcactg tatccaagga cctattggct ttctctccct 6240 tacgggtggt ctgaatggag gactagcttc ctttgacgcc ttcacctcct gcacctcaga 6300 ctggacttca gctcctcagc agggatgcta tggggtgtgg agacaaacac tgacactcag 6360 gctgtactcc ttaggggctc agtctgaatc tgcccagaac aagatgctga gtggcattgg 6420 aggcttcgtg ctggggctga tcttcctcgg gctgggcctt atcatccgtc aaaggagtca 6480 gaaaggtgag gaaccctgga ggaaaagggg aagatgggct gcgacccaga ccctttgttc 6540 agagaggtcc tgtctttgga cgtagctctt tcctcctgac cctgagagga agaaggctag 6600 gctggaggtg ggaggagaca ggacaagatt ggaaaaggca ttggaatctg attttactgg 6660 ttgaaaggta gccctgtcac agagctgact gatagagctt attgcaggac acccttacca 6720 tttatcattg tctcactggc tcctttccaa aagcttcctc cattaagagg gtcagagcct 6780 cggcctcctt gccttctagt gaaaatttcc tttgttttag gggattttaa attagggtgc 6840 ttaaggcctt gaagaacatg ggtgggaaga gaatataact aattaagtca tgtgtgtcat 6900 tttcctttgg gatgagagag tgtctgtttg tgtaatgaga cctttctctg cataacttcc 6960 ttttgtagga cctcaagggc ctccaccagc aggtaatatt tcagccatga tccagtatag 7020 ggaggacaca ggtataaggg ggaagagcat aagctgagtg gacctgacca catgatctct 7080 gttcatggcc tgtttgctgc tatgaggatc aagacttacg ggagaagttt gccagtttct 7140 gggaatctcc agaggttgtt ccccagaacc aagccttaac tttggtggca tcttcttgtg 7200 aaatgtggag ccagaaccac agcttaaatg ttacatacta ggatgatgcc cactttgtgc 7260 cacactttgt tggctactgc ctgtaggcat tttccagtga ctgaaagagg ccactagtgg 7320 tggagatgag gtatcatcca atttcctaaa aagactgaac ccttcatatt ccccagaaga 7380 ataacagctg ttccccgact tcccacacat ctgcatcaag ctgaagttct gtgtcctcat 7440 gagctgattt catctttgca cagatcttag gggaggtgat gatgatatac cctggacctc 7500 aactttctct gtctgaagct gcagggggcc cctgaggggt gggggagatg gcaggcccgc 7560 cagcataccc tgtgctgatc actcctcttc tctcttctcc agggcttctg cactgactcc 7620 tgagactatt ttaactagga ttggttatca ctcttctgtg atgcctgctt gtgcctgcc 7679 //