Dbfetch
ID LC257836; SV 1; linear; genomic DNA; STD; HUM; 7416 BP. XX AC LC257836; XX DT 26-MAR-2019 (Rel. 140, Created) DT 26-MAR-2019 (Rel. 140, Last updated, Version 1) XX DE Homo sapiens HLA-DQA1 gene for HLA class II histocompatibility antigen DQ DE alpha chain precursor, complete cds, allele: DQA1*03:03:01:03-2. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-7416 RA Shiina T., Suzuki S.; RT ; RL Submitted (10-APR-2017) to the INSDC. RL Contact:Takashi Shiina Tokai University School of Medicine, Molecular Life RL Science; Shimokasuya 143, Isehara, Kanagawa 259-1143, Japan XX RN [2] RC Publication Status: Online-Only DOI:10.3389/fimmu.2018.02294 RX DOI; .3389/fimmu.2018.02294. RX PUBMED; 30337930. RA Suzuki S., Ranade S., Osaki K., Ito S., Shigenari A., Ohnuki Y., Oka A., RA Masuya A., Harting J., Baybayan P., Kitazume M., Sunaga J., Morishima S., RA Morishima Y., Inoko H., Kulski J.K., Shiina T.; RT "Reference Grade Characterization of Polymorphisms in Full-Length HLA Class RT I and II Genes With Short-Read Sequencing on the ION PGM System and RT Long-Reads Generated by Single Molecule, Real-Time Sequencing on the PacBio RT Platform"; RL Front Immunol 9:2294-2294(2018). XX DR MD5; 64cafa2c5b2b2c96e2f5769d6828cc52. XX FH Key Location/Qualifiers FH FT source 1..7416 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT CDS join(752..833,4531..4779,5225..5506,5854..6008) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-DQA1" FT /allele="DQA1*03:03:01:03-2" FT /product="HLA class II histocompatibility antigen DQ alpha FT chain precursor" FT /db_xref="GOA:Q5Y7H0" FT /db_xref="HGNC:HGNC:4942" FT /db_xref="InterPro:IPR001003" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:Q5Y7H0" FT /protein_id="BBD34154.1" FT /translation="MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQYSHEFDGDEEFYVDLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSF FT LSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCA FT LGLSVGLVGIVVGTVLIIRGLRSVGASRHQGPL" XX SQ Sequence 7416 BP; 2176 A; 1587 C; 1590 G; 2063 T; 0 other; cagggaaaaa ttcctggagg ttataaccca gaaaatcctg aaggatgcca tataactgat 60 gacctcatct atccatgagg ctgctcagaa atgccctccc ctggccaggc gcggtggctc 120 atgcctgtaa tccaagcact ttgggaggct gaggcaggca gatcatgagg tcaggagttc 180 aagaccagcg tggccaacat agtgaaactc tgtctctact aaaaatacag aaattagccg 240 ggcatggtgg cagccgcctg cagtcccagc tactcgggag ggtgaggcag gagaatcgct 300 tgaacctggg aggcaaaggt tgcagtgagc cgagaccatg ccattgtacc tcagcctggg 360 tgacagagtg agactacgtc tcgaaaagaa aagaaaaaga aaagaaaaag aaaaaaaaag 420 aaaaatgccc atccctcttg cgaatggcag acatgcacac accagagaag attccaattt 480 agtgtcctcc ctctgttcat agaacaattc ctcaagtcca ctctgagtag aggctgcatc 540 acaacaaggg gattgccctg tctccttcca gggctcttaa tacaaactct tcagctagta 600 actgagatgt caccatgggg gatttttcta attggccaaa acctgacctg gcagggtttg 660 gtttgggtgt cttcagattt ccttgtcttg aggccctcac aattgctcta cagctcagaa 720 cagcaactgc tgaggctgcc ttgggaagag gatgatccta aacaaagctc tgatgctggg 780 ggccctcgcc ctgaccaccg tgatgagccc ttgtggaggt gaagacattg tgggtgagtg 840 catgagtgag gaatgttctc tggagctgaa aaacagtaaa ttgaaggaaa agagagaaag 900 cgatttgcag agaaattgta gagatttcct aagacccctt tcagtattaa gagaattaaa 960 aattatagct gttcctcctt caggaaacca gagccccaac ctactctttt tgttatgtat 1020 gcttttgtgt tcactaagga tgctattctg tttatattat attcagtgac aacagcttgg 1080 aggtctctat gtcgttccgt catgattgcc tcaaaaatta gtgaagtttc catcagtgga 1140 taatttttta ttattaaaaa tgtatgaagt gtcattctca aatttccctg aacaactttt 1200 gaagcttttc gtatgtctcc tgtagtagat cttggggtcg ttccatcaat tatatactct 1260 atagatatta aaaaagttgc ccgtttcttt ctctcagact tactcacatt tccacatggg 1320 aactggcaca ggtggggagt gggtaaagga gtccagcagg ctgaatgcct tcaacaatca 1380 ttttaccaca tggtcctcac ttactctcag ctgcctcata tgtgtcacct cacaaataat 1440 caaataaaat gggcatgtag ctaagctttg taaatagtga aaacatggat gtcaattgtt 1500 tttacatatt tctattacag gtatagcttc acatttttct ttagcaaaat aagggatcct 1560 tttagtttaa aattgagaag tagaaaaaat tggtaaatta aatcatttta ttctcaaatt 1620 atcaacccaa attacctgtt cttcacctca tctaataaag tcctataaaa agaaaagtgg 1680 gccagacatg gtggctcatg cctgtaatcc cagcactttg ggaggccaaa gcaggaggat 1740 catttgagcc tgggagtttg agaccagcct gggcaacata gcaagacctc atctctacca 1800 aaaaataaaa taaaaattag ccaggtgtgg tggtgcatgc ctgtggtgcc agctactcag 1860 aaggctgcag tgggaggagc acttgagtcc aggaggtgga agctgcagtg agccatgatg 1920 gcaccactac actccagcca gggcaacaga gagagactct gtctcaaaaa gaaagaggaa 1980 agaaagagag aaaggaagga aagaaggaaa gaaggaagga aggaaggaga aagggaaggg 2040 aggaaggaaa aaagaaagaa agaaagaaaa cggaaggaag gaagcacaga ttaattattt 2100 ggtctctttg tctcctctgc ctttgtcgtc catctcttcc cacctctctt catgcattcc 2160 tttctccctc ttccctttca ggatccatct ctgactccct gctcctttat agagatggac 2220 agtgagtttg taaaacaaaa gttgaaaagt cagatagtta aaaggggaag tgaactggaa 2280 ggtactctaa actttcacaa ccttattaac catggctgct cccattctga ttttgttcag 2340 cagtggaagt ttcacccgct cctccagagc gcttggcttc tttgttccaa atttcctttc 2400 ttcaacctca caccagagtg ccctggtcag gctcagctca tccattaggc acaatgtggg 2460 cagtgcaggg gaccctccag actgtaaagc cacatgagaa tgttttaact ccttttaaaa 2520 ttataaaaaa atgaaattgt agagcctaag aaaatgtttt aacttttaat tcagcctaga 2580 ttatattgtc tttataccaa ttcagtcata aaatatagtt ttccatattt ttatggagga 2640 aggcgtccac acaagcaaga gtgcttgggg ctcacatgtc agaacgcaac cctgatcatg 2700 gctgatcctg gccttcgtgt ggttctgcta actatgtgcc tgtcagtctt ccccaaaatc 2760 tatgtggtcc tcaaatataa caactgtcat tcaatacaca tgtttgagca cccagtgagc 2820 taagttttaa ggattcaaag atgaaaagtc atgctgtctc ctctgcaaag ggtgctcaga 2880 ctagtgatgg aaacagtatg ggatgaaaga aagcagaagg ccattgctga gcaggcagtg 2940 gactcagcag aggctgaaac tatacaagtg acttggttcc agctgggcca gcaggataac 3000 cagatgaaaa gaaggattgc atatattcca tatatattta tgtttgaaca aagagtcaag 3060 gtttattgca aggataagga ggttttgttg gtggcctgtt aagaccatcc agggtggtca 3120 tactggatag ggaagaaggt gagctggaag aggaacagac aaacttggat ggccagatgt 3180 tgagatggag gagatggagg tcataacgtg gtcaaaaaca tgttgatgag aggacttagc 3240 tacaaagttg ttaacttaag cagaaacctc aaggattgat tttatgattt ctccaggaag 3300 tcctaaaagt taatttcatt tcagggagaa aaacaacaga ccactgcaaa gaccaggaac 3360 atgaaaggat aatgtagttt ggtttgcttg gcagatactt gtgaaagatg ttggactgta 3420 aggctgtcaa tatcctcctc gcagaactta ctacagtaca ttgtatctgc tcccttacct 3480 acctgactct cccactattc agtttgttcc ttaatggtag accatgcctg atcggtgttt 3540 tacacatccc ctgctatgtc tgatacttgt ggatgctcag aaagtgggga aggaaggaaa 3600 gatacgatgg taaaaggctt acacatgtct tgagcagaat gttcagtttg gctcatttgg 3660 ctggagtcat actgcatggc tgccattctg ctctggcatc ctcacagaag cacactgccc 3720 attaaaggaa aaagggtgaa tacaaatgtt gagtcagaac actgcagaca tttagtaacc 3780 tccttcagag gaaaaaaaaa ggtgggggga atgacagaaa tccaaaaact agtagagctt 3840 ccactttttc atttcagaag aaatcagtta ctctcctcta aggaccatta ctattaacaa 3900 aacagagacc ttagaaggaa gcattattta cttatcatat attttgtaat gttattaccc 3960 ttcttgttat actctttctt ataccctacc attgttagca gaaattattt taaattaata 4020 agatcctgca tgcttttcct ttttctaaaa aaagaaagat ctctgtgtag aatgtcctgt 4080 tctgagccag tcctgagagg aaaggaagta taatcaattt gttattaact gatgaaagaa 4140 ttaagtgaaa gataaacctt aggaagcaga gggaagttaa tctatgacta agaaagttaa 4200 gtactctgat aactcattca ttccttcttt tgttcattta cattatttaa tcacaagtct 4260 atgatgtgcc aggcactcag gaaatagtga aaattggaca cgcgatattc tgcccttgtg 4320 tagcacacac cgtagtggga aagaaagtgc acttttaacc ggacaactat caacacgaag 4380 aggggaggaa gcaggggctg gaaatgtcca cagactttgc caaagacaaa gcccataata 4440 tctgaaagtc agtttcttcc atcattttgt gtattaaggt tctttattcc cctgttctct 4500 gccttcctgc ttgtcatctt cactcatcag ctgaccatgt tgcctcttac ggtgtaaact 4560 tgtaccagtc ttatggtccc tctgggcagt acagccatga atttgatgga gacgaggagt 4620 tctatgtgga cctggagagg aaggagactg tctggcagtt gcctctgttc cgcagattta 4680 gaagatttga cccgcaattt gcactgacaa acatcgctgt gctaaaacat aacttgaaca 4740 tcgtgattaa acgctccaac tctaccgctg ctaccaatgg tatgtgtcca ccattctgcc 4800 tttctttact gatttatccc tttataccaa gtttcattat tttctttcca agaggtcccc 4860 agatcttctc atggcaattg ctgaaatttt atcatttctc atctctaaaa tcacatattc 4920 caatgtaata caagggtctt tccattatgc attcattaaa tccttctagg agaggtctca 4980 tcaaccttct actttattaa acatgcccac agagagaagg gcacaggagt aaagcagagg 5040 caatgtgtcg ttgctcccaa atgtgtcgtt acaatgtgtc gttgcttacc caaagaggta 5100 aataaggcct ctttgaccag caggagagga aatgctggta ggaagactct tccaggatgt 5160 aatgcagaag aagctcaggg cagagctatt cacactttac accagtgctg tttcctcacc 5220 atagaggttc ctgaggtcac agtgttttcc aagtctcccg tgacactggg tcagcccaac 5280 accctcatct gtcttgtgga caacatcttt cctcctgtgg tcaacatcac ctggctgagc 5340 aatgggcact cagtcacaga aggtgtttct gagaccagct tcctctccaa gagtgatcat 5400 tccttcttca agatcagtta cctcaccttc ctcccttctg atgatgagat ttatgactgc 5460 aaggtggagc actggggcct ggatgagcct cttctgaaac actggggtaa ggatgagttt 5520 caccattttt tgatgctttc ttgtctgtca agttcagaac ttcctgcctt ttactctata 5580 tcccaaaact tgttttccac acttcatgag tttcttttgt cttttttttg aaagaattaa 5640 gcaacaaaag cacagattta ttaaaaaaga aagtacactc cacagggtgg gagcaggcct 5700 gccacttcat gggtttctaa taacagactt cactctcctc cctaagctgg gggccttgag 5760 tctttgcaga gccaaccctc taccccatcc catcccacac acatgcacat gagcaaactc 5820 tgcattctga cctcaacaac ttcacttcca cagagcctga gattccaaca cctatgtcag 5880 agctcacaga gactgtggtc tgcgccctgg ggttgtctgt gggcctcgtg ggcattgtgg 5940 tggggaccgt cttgatcatc cgaggcctgc gttcagttgg tgcttccaga caccaagggc 6000 ccttgtgaat cccatcctga aaaggaaggt aagattgaga tttgttagag ctgaagctgc 6060 aggaaggaaa gtgggaggag gctgtggaca tgaatgtggt tgaaagttgt aggggaattg 6120 ggaagtggca tgatgatgac acaggagccc ccttggaccc atcgatctca tgtctgtcct 6180 gttgcaggtg catcaccatc tacagcagcg gaagagtgga cttgctacat gacctagcac 6240 tattctctgg cccgatttat catacccttt ttctcctgca aatgtttctc ctcttacctt 6300 ttctctgctt tttttttctt aagcttctgt atcccctcag agctcacaaa tgcctttgaa 6360 ttctttccct gacctcctga tttttttttc ttttctcagg tgttacctac taagagatgc 6420 ctggggtaag ccgcccagct acctaattcc tcagtaacat cgatctaaaa tctccatgga 6480 agcaataaat tccctttaag agatctatgt caaatttttc tatctttcat ccggggctga 6540 ctgaacctat ggctaagaat tgtgacactc tcatgtttca agccaatttc atctcatttc 6600 ccagatcata tttcatatcc agtaacacag aagcaaccaa gtacaatata gcctgataat 6660 atgttgattt cttagctgac attaatattt ctttcttctt tgtgttctca cccttggcac 6720 tgccgcccat ccctcaattc aggcaacaat gaagttaatg gatactctct gccctttgct 6780 cagaattgtt atagcaaaaa ttttaaaacc aaaaaataag tttgtactaa tttcaatatg 6840 gcttttaaaa gtatgatgga gaaataaatt aggataaagg aactttgaat cacaaaaata 6900 tcaaaagtaa aaatttattc tcaaaacttt gaatttgtaa agaatgatga cagtagaagc 6960 cttcctctcc cctcctcgcc tttagggaat aaaaattctt taggtaggaa aagaaatgga 7020 agtcagaaaa acattagaaa aagacagtaa tgtgggtatc tgaaaaggaa caaatactta 7080 ttcctcacat agggttagtg acaatgggaa aagggatagg agtagaagcc acagacatat 7140 ctaggagccc tgaatagagg cgcagtctgc ctcacctcct gaatgaagct ttgctagata 7200 accacgtagc tttccctgtg ccacccttgc atgaagcaga cagtatagtg gatatggcag 7260 gatgtttcta ggaaacatgc cgatacaaaa caatgccagt atcttcagaa atccccagcc 7320 ctttcccctc acccctcctg gctaaggaaa gcactagctt atgagagaaa ccctaggagg 7380 aacaacacag ttgagacaat gtagcagcag ctgtgg 7416 //