Dbfetch
ID LC257747; SV 1; linear; genomic DNA; STD; HUM; 4739 BP. XX AC LC257747; XX DT 26-MAR-2019 (Rel. 140, Created) DT 26-MAR-2019 (Rel. 140, Last updated, Version 1) XX DE Homo sapiens HLA-C gene for HLA class I histocompatibility antigen C alpha DE chain precursor, complete cds, allele: C*01:02:01:01. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4739 RA Shiina T., Suzuki S.; RT ; RL Submitted (10-APR-2017) to the INSDC. RL Contact:Takashi Shiina Tokai University School of Medicine, Molecular Life RL Science; Shimokasuya 143, Isehara, Kanagawa 259-1143, Japan XX RN [2] RC Publication Status: Online-Only DOI:10.3389/fimmu.2018.02294 RX DOI; .3389/fimmu.2018.02294. RX PUBMED; 30337930. RA Suzuki S., Ranade S., Osaki K., Ito S., Shigenari A., Ohnuki Y., Oka A., RA Masuya A., Harting J., Baybayan P., Kitazume M., Sunaga J., Morishima S., RA Morishima Y., Inoko H., Kulski J.K., Shiina T.; RT "Reference Grade Characterization of Polymorphisms in Full-Length HLA Class RT I and II Genes With Short-Read Sequencing on the ION PGM System and RT Long-Reads Generated by Single Molecule, Real-Time Sequencing on the PacBio RT Platform"; RL Front Immunol 9:2294-2294(2018). XX DR MD5; f57aee179c2648f03c46427881b6b48e. XX FH Key Location/Qualifiers FH FT source 1..4739 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT CDS join(1015..1087,1218..1487,1734..2009,2597..2872, FT 2994..3113,3553..3585,3693..3740,3905..3909) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-C" FT /allele="C*01:02:01:01" FT /product="HLA class I histocompatibility antigen C alpha FT chain precursor" FT /db_xref="GOA:Q7YNW6" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:Q7YNW6" FT /protein_id="BBD34065.1" FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMKYFFTSVSRPGRGEPR FT FISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRN FT LRGYYNQSEAGSHTLQWMCGCDLGPDGRLLRGYDQYAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVMVPSGEEQRY FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" XX SQ Sequence 4739 BP; 967 A; 1303 C; 1395 G; 1074 T; 0 other; aacgggcagt gctggagcgc tggtgaagag cattgggact gcatggagct ctcgcaactt 60 tgaggtgatg actacaggct cccggttgca atagacagta acaaaccctg cttctttgta 120 ttcaggagat gttctggact cacacaagga aactcgggct agagaatgag gataatttta 180 aatgcaacaa cccagagtca cagatccata gtctgcgaaa gtaaaacagg aggtttgaga 240 atttaattgt aatgcagttt tgacacaggt ctttcacaga ttggaattct aatcattcag 300 ggattaccaa tattgtgcta cctactgtat caataaacaa aaaggaaact ggtctctatg 360 agaatctcta cctggtgctt tcagacaaca cttcaccagg tttaaagaga aaactcctga 420 ctctacacgt ccattcccag ggcgagctca ctgtctggca tcaagttccc catggtgagt 480 ttccctgtac aagagtccaa ggggagaggt aagtgtcctt tattttgctg gatgtagttt 540 aatattacct gaggtaaggt aaggcaaaga gtgggaggca gggagtccag ttcagggacg 600 gggattccag gagaagtgaa ggggaagggg ctgggcgcag cctgggggtc tctccctggt 660 ttccacagac agatccttgg ccaggactca ggcacacagt gtgacaaaga tgcttggtgt 720 aggagaagag ggatcaggac gaagtcccag gtcccgggcg gggttctcag ggtctcaggc 780 tccaagggcc gtgtctgcac tggggaggcg ccgcgttgag gattctccac tcccctgagt 840 ttcacttctt ctcccaacct gcgtcgggtc cttcttcctg aatactcatg acgcgtcccc 900 aattcccact cccattgggt gtcgggttct agagaagcca atcagcgtct ccgcagtccc 960 ggttctaaag tccccagtca cccacccgga ctcagattct ccccagacgc cgagatgcgg 1020 gtcatggcgc cccgaaccct catcctgctg ctctcgggag ccctggccct gaccgagacc 1080 tgggcctgtg agtgcggggt tgggagggaa acggcctctg cggagaggaa cgaggtgccc 1140 gcccggcgag ggcgcaggac ccggggagcc gcgcagggag gagggtcggg cgggtctcag 1200 cccctcctcg cccccaggct cccactccat gaagtatttc ttcacatccg tgtcccggcc 1260 tggccgcgga gagccccgct tcatctcagt gggctacgtg gacgacacgc agttcgtgcg 1320 gttcgacagc gacgccgcga gtccgagagg ggagccgcgg gcgccgtggg tggagcagga 1380 ggggccggag tattgggacc gggagacaca gaagtacaag cgccaggcac agactgaccg 1440 agtgagcctg cggaacctgc gcggctacta caaccagagc gaggccggtg agtgaccccg 1500 gcccggggcg caggtcacga cccctcctca tcccccacgg acggcccggg tcgccccaag 1560 tctcccggtc tgagatccac cccgaggctg cggaacccgc ccagaccctc gaccggagag 1620 agccccagtc acctttaccc ggtttcattt tcagtttagg ccaaaatccc cgcgggttgg 1680 tcgggactgg ggcggggctc gggggacggg gctgaccacg ggggcggggc cagggtctca 1740 caccctccag tggatgtgtg gctgcgacct ggggcccgac gggcgcctcc tccgcgggta 1800 tgaccagtac gcctacgacg gcaaggatta catcgccctg aacgaggacc tgcgctcctg 1860 gaccgccgcg gacaccgcgg ctcagatcac ccagcgcaag tgggaggcgg cccgtgaggc 1920 ggagcagcgg agagcctacc tggagggcac gtgcgtggag tggctccgca gatacctgga 1980 gaacgggaag gagacgctgc agcgcgcggg taccaggggc agtggggagc cttccccatc 2040 tcccgtagat ctcccggcat ggcctcccac gaggagggga ggaaaatggg atcagcgcta 2100 gaatatcgcc ctcccttgaa tggagaatgg gatgagtttt cctgagtttc ctctgagggc 2160 cccctctgct ctctaggaca attaagggat gaagtccttg aggaaatgga ggggaagaca 2220 gtccctggaa tactgatcag gggtcccctt tgaccacttt gaccactgca gcagctgtgg 2280 tcaggctgct gacctttctc tcaggccttg ttctctgcct cacgctcaat gtgtttgaag 2340 gtttgattcc agcttttctg agtccttcgg cctccactca ggtcaggacc agaagtcgct 2400 gttcctccct cagagactag aactttccaa tgaataggag attatcccag gtgcctgtgt 2460 ccaggctggc gtctgggttc tgtgccccct tccccacccc aggtgtcctg tccattctca 2520 ggatggtcac atgggcgctg ttggagtgtc gcaagagaga tacaaagtgt ctgaattttc 2580 tgactcttcc cgtcagaaca cccaaagaca cacgtgaccc accatcccgt ctctgaccat 2640 gaggccaccc tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg 2700 cagtgggatg gggaggacca aactcaggac accgagcttg tggagaccag gccagcagga 2760 gatggaacct tccagaagtg ggcagctgtg atggtgcctt ctggagaaga gcagagatac 2820 acgtgccatg tgcagcacga ggggctgccg gagcccctca ccctgagatg gggtaaggag 2880 ggggatgagg ggtgatgtgt cttctcaggg aaagcagaag tcctggagcc cttcagccgg 2940 gtcagggctg aggcttggag gtcagggccc ctcaccttcc cctcctttcc cagagccgtc 3000 ttcccagccc accatcccca tcgtgggcat cgttgctggc ctggctgtcc tggctgtcct 3060 agctgtccta ggagctgtgg tggctgttgt gatgtgtagg aggaagagct caggtaggga 3120 aggggtgagg agtggggtct gggttttctt gttccactgg gagtttcaag ccccaggtag 3180 aagtgtgccc cacctcgtta ctggaagcac catccacaca tgggccatcc cagcctggga 3240 ccctgtgtgc cagcacttac tctgttgtga agcacatgac aatgaaggac agatgtatca 3300 ccttgatgat tatggtgttg gggtccttga ttccagcatt catgagtcag gggaaggtcc 3360 ctgctaagga cagaccttag gagggcagtt gcttcagaac ccacagctgc tttccccgtg 3420 tttcctgatc ctgccctggg tctgcagtca tagttctgga aacttctctt gggtccaaga 3480 ctaggaggtt cccctaagat cgcatggccc tgcctcctcc ctgtcccctc acagggcatt 3540 ttcttcccac aggtggaaaa ggagggagct gctctcaggc tgcgtgtaag tgatggcggt 3600 gggcgtgtgg aggagctcac ccaccccata attcctcttg tcccacatct cctgcgggct 3660 ctgaccaggt cttttttttt gttctacccc agccagcaac agtgcccagg gctctgatga 3720 gtctctcatc gcttgtaaag gtgagattct ggggagctga agtggtcggg ggtggggcag 3780 agggaaaagg cctaggtaat ggggatcctt tgattgggac gtttcgaatg tgtggtgagc 3840 tgttcagagt gtcatcactt accatgactg acctgaattt gttcatgact attgtgttct 3900 gtagcctgag acagctgcct gtgtgggact gagatgcagg atttcttcac acctctcctt 3960 tgtgacttca agagcctctg gcatctcttt ctgcaaaggc atctgaatgt gtctgcgttc 4020 ctgttagcat aatgtgagga ggtggagaga cagcccaccc ccgtgtccac cgtgacccct 4080 gtccccacac tgacctgtgt tccctccccg atcatctttc ctgttccaga gaagtgggct 4140 ggatgtctcc atctctgtct caacttcatg gtgcgctgag ctgcaacttc ttacttccct 4200 aatgaagtta agaacctgaa tataaatttg ttttctcaaa tatttgctat gaagggttga 4260 tggattaatt aaataagtca attcctggaa gttgagagag caaataaaga cctgagaacc 4320 ttccagaatc cgcatgttcg ctgtgctgag tctgttgcag gtgggggtgg ggaaggctgt 4380 gaggagacga gtgtggacgg ggcctgtgcc tagttgctgt tcagttcttc atgggcttta 4440 tgtggtcagt cctcagctgg gtcaccttca ctgctccatt gtccttgtcc cttcagtgga 4500 aacttgtcca gcgggagctg tgaccacaga ggctcacaca tcgcccaggg cagcccctgc 4560 acacgggagt ccctgtgctt tctgagacaa attttcagac ccagtcagct cctgccctcc 4620 ttctagggct cctcttctgc tttggtctcc tgccctctct cccttccctg attccagtga 4680 tcttcgtgct gactccaatc ccaactcatg aatctaaagc agagcctaat ttagattta 4739 //