Dbfetch
ID LC257697; SV 1; linear; genomic DNA; STD; HUM; 5425 BP. XX AC LC257697; XX DT 26-MAR-2019 (Rel. 140, Created) DT 26-MAR-2019 (Rel. 140, Last updated, Version 1) XX DE Homo sapiens HLA-A gene for HLA class I histocompatibility antigen A alpha DE chain precursor, complete cds, allele: A*26:02:01. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5425 RA Shiina T., Suzuki S.; RT ; RL Submitted (10-APR-2017) to the INSDC. RL Contact:Takashi Shiina Tokai University School of Medicine, Molecular Life RL Science; Shimokasuya 143, Isehara, Kanagawa 259-1143, Japan XX RN [2] RC Publication Status: Online-Only DOI:10.3389/fimmu.2018.02294 RX DOI; .3389/fimmu.2018.02294. RX PUBMED; 30337930. RA Suzuki S., Ranade S., Osaki K., Ito S., Shigenari A., Ohnuki Y., Oka A., RA Masuya A., Harting J., Baybayan P., Kitazume M., Sunaga J., Morishima S., RA Morishima Y., Inoko H., Kulski J.K., Shiina T.; RT "Reference Grade Characterization of Polymorphisms in Full-Length HLA Class RT I and II Genes With Short-Read Sequencing on the ION PGM System and RT Long-Reads Generated by Single Molecule, Real-Time Sequencing on the PacBio RT Platform"; RL Front Immunol 9:2294-2294(2018). XX DR MD5; 3224b84643dec44caa4c13672ed2a811. XX FH Key Location/Qualifiers FH FT source 1..5425 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT CDS join(817..889,1020..1289,1531..1806,2407..2682,2782..2898, FT 3337..3369,3512..3559,3729..3733) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-A" FT /allele="A*26:02:01" FT /product="HLA class I histocompatibility antigen A alpha FT chain precursor" FT /db_xref="GOA:A0A1S7SKC8" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:A0A1S7SKC8" FT /protein_id="BBD34015.1" FT /translation="MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRANLGT FT LRGYYNQSEDGSHTIQRMYGCDVGPDGRFLRGYQQNAYDGKDYIALNEDLRSWTAADMA FT AQITQRKWETAHEAEQWRAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHE FT ATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRY FT TCHVQHEGLPKPLTLRWEPSSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRK FT GGSYSQAASSDSAQGSDMSLTACKV" XX SQ Sequence 5425 BP; 1183 A; 1410 C; 1537 G; 1295 T; 0 other; ttaaaatact acaagcagga gtcacagata cattgtctgg gaaaatgcaa cttagtagct 60 ttgtgagtcc tgttgtaagg cttttggaca catttataca tcaaggggcc aaagtcacat 120 tttttaccta ttagattcct gatcattcag gggttaccaa gattctgcta cccactgtag 180 ttaataaaca aagagcaaac tggtctctat tctgtctcat gcactcaggc gcaactcttc 240 ccgattaaaa acaaaaacaa caacaacaaa aatctacacc tccattccca gagcaagctt 300 actctctggc accaaactcc atgggatgat ttttcttcta gaagagtcca ggtggacagg 360 taaggagtgg gagtcaggga gtccagttca gggacagaga ttacgggata aaaagtgaaa 420 ggagagggac ggggcccatg ccgagggttt ctcccttgtt tctcagacag ctcttgggcc 480 aagactcagg gagacattga gacagagcgc ttggcacagg agcagagggg tcagggcgaa 540 gtcccagggc cccaggcgtg gctctcaggg tctcaggccc cgaaggcggt atatggattg 600 gggagtccca gccttgggga ttccccaact ccgcagtttc ttttctccct ctcccaacct 660 atgtagggtc cttcttcctg gatactcacg acgcggaccc agttctcact cccattgggt 720 gtcgggtttc cagagaagcc aatcagtgtc gtcgcggtcg cggttctaaa gtccgcacgc 780 acccaccggg actcagattc tccccagacg ccgaggatgg ccgtcatggc gccccgaacc 840 ctcgtcctgc tactctcggg ggccctggcc ctgacccaga cctgggcggg tgagtgcggg 900 gtcgggaggg aaacggcctc tgtggggaga agcaaggggc ccgcccggcg ggggcgcagg 960 acccgggaag ccgcgcctgg aggagggtcg ggcgggtctc agccactcct cgcccccagg 1020 ctcccactcc atgaggtatt tctacacctc cgtgtcccgg cccggccgcg gggagccccg 1080 cttcatcgcc gtgggctacg tggacgacac gcagttcgtg cggttcgaca gcgacgccgc 1140 gagccagagg atggagccgc gggcgccgtg gatagagcag gaggggccgg agtattggga 1200 ccggaacaca cggaatgtga aggcccactc acagactgac cgagcgaacc tggggaccct 1260 gcgcggctac tacaaccaga gcgaggacgg tgagtgaccc cggcccgggg cgcaggtcac 1320 gacccctcat cccccacgga cgggccaggt cgcccacagt ctccgggtcc gagatccgcc 1380 ccgaagccgc gggaccccga gacccttgcc ccgggagagg cccaggcgcc tttacccggt 1440 ttcattttca gtttaggcca aaaatccccc cgggttggtc ggggcggggc ggggctcggg 1500 ggaccgggct gacctcgggg tccgggccag gttctcacac catccagagg atgtatggct 1560 gcgacgtggg gccggacggg cgcttcctcc gcgggtacca gcagaacgct tacgacggca 1620 aggattacat cgccctgaac gaggacctgc gctcttggac cgcggcggac atggcggctc 1680 agatcaccca gcgcaagtgg gagacggccc atgaggcgga gcagtggaga gcctacctgg 1740 agggccggtg cgtggagtgg ctccgcagat acctggagaa cgggaaggag acgctgcagc 1800 gcacgggtac caggggccac ggggcgcctc cctgatcgcc tgtagatctc ccgggctggc 1860 ctcccacaag gaggggagac aattgggacc aacactagaa tatcgccctc cctctggtcc 1920 tgagggagag gaatcctcct gggtttccag atcctgtacc agagagtgac tctgaggttc 1980 cgccctgctc tctgacacaa ttaagggata aaatctctga aggaatgacg ggaagacgat 2040 ccctcgaata ctgatgagtg gttccctttg acacacaccg gcagcagcct tgggcccgtg 2100 acttttcctc tcaggccttg ttctctgctt cacactcaat gtgtgtgggg gtctgagtcc 2160 agcacttctg agtccctcag cctccactca ggtcaggacc agaagtcgct gttccctctt 2220 cagggactag aattttccac ggaataggag attatcccag gtgcctgtgt ccaggctggt 2280 gtctgggttc tgtgctccct tccccatccc aggtgtcctg tccattctca agatagccac 2340 atgtgtgctg gaggagtgtc ccatgacaga tgcaaaatgc ctgaatgttc tgactcttcc 2400 tgacagacgc ccccaagacg catatgactc accacgctgt ctctgaccat gaggccaccc 2460 tgaggtgctg ggccctgagc ttctaccctg cggagatcac actgacctgg cagcgggatg 2520 gggaggacca gacccaggac acggagctcg tggagaccag gcctgcaggg gatgggacct 2580 tccagaagtg ggcgtctgtg gtggtgcctt ctggacagga gcagagatac acctgccatg 2640 tgcagcatga gggtctgccc aagcccctca ccctgagatg gggtaaggag ggagacgggg 2700 gtgtcatgtc ttttagggaa agcaggagcc tctctgacct ttagcagggt cagggcccct 2760 caccttcccc tcttttccca gagccgtctt cccagcccac catccccatc gtgggcatca 2820 ttgctggcct ggttctcttt ggagctgtga tcgctggagc tgtggtcgct gctgtgatgt 2880 ggaggaggaa gagctcaggt ggggaaggga tgaagggtgg gtctgagatt tcttgtctca 2940 ctgagggttc caagacccag gtagaagtgt gccctgcctc gttactggga agcaccatcc 3000 acaattatga gcctacccag cctgggccct gtgtgccagc acttactctt ttgtaaagca 3060 cctgttaaaa tgaaggacag atttatcacc ttgattacgg cggtgatggg acctgatccc 3120 agcagtcaca agtcacaggg gaaggtccct gaggaccttc aggagggcgg ttggtccagg 3180 acccacacct gctttcttca tgtttcctga tcccgccctg ggtctgcagt cacacatttc 3240 tggaaacttc tctgaggtcc aagacttgga ggttcctcta ggaccttaag gccctggctc 3300 ctttctggta tctcacagga cattttcttc ccacagatag aaaaggaggg agctactctc 3360 aggctgcaag taagtatgaa ggaggctgat gcctgaggtc cttgggatat tgtgtttggg 3420 agcccgtggg ggagctcacc caccccacaa ttcctcctct agccacatgt tctgtgggat 3480 ctgaccaggt tctgtttttg tcctacccca ggcagtgaca gtgcccaggg ctctgatatg 3540 tctctcacag cttgtaaagg tgagagcctg gagggcctga tgtgtgttgg gtgttgggcg 3600 gaacagtgga cgcagctgtg ctatggggtt tctttgcatt ggatgtattg agcatgcgat 3660 gggctgttta aagtgtgact cctcactgtg acagatacga atttgttcat gaatattttt 3720 ttctatagtg tgagacagct gccttgtgtg ggactgagag gcaagatttg ttcctgccct 3780 tccctttgtg acttgaagaa ccctgacttt gtttctgcaa aggcacctgc atgtgtctgt 3840 gttcttgtag gcataatgtg aggaggtggg gagaccaccc cacccccatg tccaccatga 3900 ccctcttccc acgctgacct gtgctccctc cccaatcatc tttcctgttc cagagaggtg 3960 gggctgaggt gtctccatct ctgcctcaac ttcatggtgc actgagctgt aactttttcc 4020 ttccctatta aaattagaac ctgagtataa atttactttc tcaaattctt gccatgagag 4080 gttgatgagt taattaaagg agaagattcc taaaatttga gagacaaaat aaatggaaca 4140 catgagaacc ttccagagtc cacgtgttgc ttatgctgat ttgttgcagg ggaggagagt 4200 agatggggct gtgcccagtt tctgttccgg ccaccatggg ctttatgtgg tcactgcttg 4260 gctgggtcat ctttgctgct ccattgtcct tggcccttca gtagaaactt gtcccaccaa 4320 gacctgtgat cacagggagt tggatgtcac ctacggtggt ccctgcatac aaatctcctt 4380 gtggtatcaa gagacaaatt ttcagacctg tccaggtctt gccttcctcc cagggctttt 4440 tcctcaattg tatttttgat ttttctccag tctttttaaa ggaaccagat tgtgacattt 4500 gcagagagga ggggtcccat agtttctcat catgattaac tttctgttgg aactcctctt 4560 ctgccctcct actcttcttc ctgctctgag ttgtagtaat cctaatgctg gctccaatcc 4620 aaactcatag atttataaag cagagtctaa tttagattca tatgtggttg gaaaattgta 4680 cccataaggc tagggttatt gttcctgaag agaaatatat ggttttgtgc tgaagtgtgc 4740 aggagggttg gtgtgggagg agggaggaca cacaagcagc cctggtgaga aaagcactgg 4800 cggcatggat gtccatgtga acttatgttc tttagctgcc acaaaacagc atttgccctg 4860 tggctacatt aataaaggta tgggctttag aatagggagg tgctctacag tgatcattca 4920 ttcaactgac atttgttgtc tgctagggat atgactgctt ttgcatttag aaagcatcct 4980 taaagtaaaa acagaaaaat ttctggggtt atggtgcata cgttctagat gcaggcttgt 5040 ccaacccgtg gctcgtgggc tgcatgtggc ccaggacaat tttgaatgtg aggacttttt 5100 tgcttatctg tggtgcacct gagtcctgga gtgagtgcac ccacctccct cagggtcagg 5160 agtgaatgct ttaggaaccc tccttttcag tgacctgcca aagataaagg gcacatttac 5220 tgtgataacc cagagtatca gccaaggggg cttgaccttc aaggagttgt ggggaaggtt 5280 aataaagggt ggtgtcccag ggtcagaaaa gatgggcaga cagcaagggc acttcttgat 5340 atctatgata agcatgtgga attgagtagc aagcttcaga ttcagaatcc agtgactaag 5400 gacatatctg tatccctaag agaaa 5425 //