Dbfetch
ID LC257695; SV 1; linear; genomic DNA; STD; HUM; 5411 BP. XX AC LC257695; XX DT 26-MAR-2019 (Rel. 140, Created) DT 26-MAR-2019 (Rel. 140, Last updated, Version 1) XX DE Homo sapiens HLA-A gene for HLA class I histocompatibility antigen A alpha DE chain precursor, complete cds, allele: A*24:20:01:02. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5411 RA Shiina T., Suzuki S.; RT ; RL Submitted (10-APR-2017) to the INSDC. RL Contact:Takashi Shiina Tokai University School of Medicine, Molecular Life RL Science; Shimokasuya 143, Isehara, Kanagawa 259-1143, Japan XX RN [2] RC Publication Status: Online-Only DOI:10.3389/fimmu.2018.02294 RX DOI; .3389/fimmu.2018.02294. RX PUBMED; 30337930. RA Suzuki S., Ranade S., Osaki K., Ito S., Shigenari A., Ohnuki Y., Oka A., RA Masuya A., Harting J., Baybayan P., Kitazume M., Sunaga J., Morishima S., RA Morishima Y., Inoko H., Kulski J.K., Shiina T.; RT "Reference Grade Characterization of Polymorphisms in Full-Length HLA Class RT I and II Genes With Short-Read Sequencing on the ION PGM System and RT Long-Reads Generated by Single Molecule, Real-Time Sequencing on the PacBio RT Platform"; RL Front Immunol 9:2294-2294(2018). XX DR MD5; 3aadbb12372f48d77a86275efcba344c. XX FH Key Location/Qualifiers FH FT source 1..5411 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT CDS join(817..889,1020..1289,1531..1806,2386..2661,2764..2880, FT 3323..3355,3498..3545,3714..3718) FT /codon_start=1 FT /transl_table=1 FT /gene="HLA-A" FT /allele="A*24:20:01:02" FT /product="HLA class I histocompatibility antigen A alpha FT chain precursor" FT /db_xref="GOA:C5IWY4" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:C5IWY4" FT /protein_id="BBD34013.1" FT /translation="MAVMAPRTLVLLLSGALALTQTWAGSQSMRYFSTSVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDEETGKVKAHSQTDRENLRI FT ALRYYNQSEAGSHTLQMMFGCDVGSDGRFLRGYHQYAYDGKDYIALKEDLRSWTAADMA FT AQITKRKWEAAHVAEQQRAYLEGTCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQPTVPIVGIIAGLVLLGAVITGAVVAAVMWRRNSSDRK FT GGSYSQAASSDSAQGSDVSLTACKV" XX SQ Sequence 5411 BP; 1196 A; 1401 C; 1524 G; 1290 T; 0 other; ttaaaatact acaagcagga gtcacagata cattgtctgg gaaaatgcaa cttagtagct 60 ttgtgagtcc tgttgtaagg cttttggaca catttataca tcaaggggcc aaagtcacat 120 tttttaccta ttagattcct gatcattcag gggttaccaa gattctgcta cccactgtag 180 ttaataaaca aagagcaaat tggtctctat tctgtctcat gcactcaggc gcaactcttc 240 ctgattaaaa acaaaaacaa caacaacaaa aatctacacc tccattccca gagcaagctt 300 actctctggc accaaactcc atgggatgat ttttcttcta gaagagtcca ggtggacagg 360 taaggagtgg gagtcaggga gtccagttca gggacagaga ttacgggatg aaaagtgaaa 420 ggagagggac ggggcccatg ccgagggttt ctcccttgtt tctcagacag ctcttgggcc 480 aagattcagg gagacattga gacagagcgc ttggcacaga agcagagggg tcagggcgaa 540 gtcccagggc cccaggcgtg gctctcaggg tctcaggccc cgaaggcggt gtatggattg 600 gggagtccca gccttgggga ttccccaact ccgcagtttc ttttctccct ctcccaacct 660 atgtagggtc cttcttcctg gatactcacg acgcggaccc agttctcact cccattgggt 720 gtcgggtttc cagagaagcc aatcagtgtc gtcgcggtcg ctgttctaaa gtccgcacgc 780 acccaccggg actcagattc tccccagacg ccgaggatgg ccgtcatggc gccccgaacc 840 ctcgtcctgc tactctcggg ggccctggcc ctgacccaga cctgggcagg tgagcgcggg 900 gtcgggaggg aaacggcctc tgcggggaga agcaaggggc ccgcctggcg ggggcgcaag 960 acccgggaag ccgcgccggg aggagggtcg ggcgggtctc agccactcct cgtccccagg 1020 ctcccaatcc atgaggtatt tctccacatc cgtgtcccgg cccggccgcg gggagccccg 1080 cttcatcgcc gtgggctacg tggacgacac gcagttcgtg cggttcgaca gcgacgccgc 1140 gagccagagg atggagccgc gggcgccgtg gatagagcag gaggggccgg agtattggga 1200 cgaggagaca gggaaagtga aggcccactc acagactgac cgagagaacc tgcggatcgc 1260 gctccgctac tacaaccaga gcgaggccgg tgagtgaccc cggcccgggg cgcaggtcac 1320 gacccctcat cccccacgga cgggccgggt cgcccacagt ctccgggtcc gagatccacc 1380 ccgaagccgc gggaccccga gacccttgcc ccgggagagg cccaggcgcc ttaacccggt 1440 ttcattttca gtttaggcca aaaatccccc cgggttggtc ggggccgggc ggggctcggg 1500 ggactgggct gaccgcgggg tcggggccag gttctcacac cctccagatg atgtttggct 1560 gcgacgtggg gtcggacggg cgcttcctcc gcgggtacca ccagtacgcc tacgacggca 1620 aggattacat cgccctgaaa gaggacctgc gctcttggac cgcggcggac atggcggctc 1680 agatcaccaa gcgcaagtgg gaggcggccc atgtggcgga gcagcagaga gcctacctgg 1740 agggcacgtg cgtggacggg ctccgcagat acctggagaa cgggaaggag acgctgcagc 1800 gcacgggtac caggggccac ggggcgccta cctgatcgcc tgtaggtctc ccgggctggc 1860 ctcccacaag gaggggagac aattgggacc aacactagaa tatcgccctc cctctggtcc 1920 tgagggagag gaatcctcct gggtttccag atcctgtacc agagagtgac tctgaggttc 1980 cgccctgctc tctgacacaa ttaagggata aaatctctga cggaatgacg gaaagacgat 2040 ccctcgaata ctgatgactg gttccctttg acaccggcag cagccttggg accgtgactt 2100 ttcctctcag gccttgttct ctgcttcaca ctcaatgtgt gtgggggtct gagtccagca 2160 cttctgagtc cctcagcctc cactcaggtc aggaccagaa gtcgctgttc cctcctcagg 2220 gaatagaaga ttatcccagg tgcctgtgtc caggctggtg tctgggttct gtgctctctt 2280 ccccatcccg ggtgtcctgt ccattctcaa gatggccaca tgcatgctgg tggagtgtcc 2340 catgacagat gcaaaatgcc tgaattttct gactcttccc gtcagacccc cccaagacac 2400 atatgaccca ccaccccatc tctgaccatg aggccactct gagatgctgg gccctgggct 2460 tctaccctgc ggagatcaca ctgacctggc agcgggatgg ggaggaccag acccaggaca 2520 cggagcttgt ggagaccagg cctgcagggg atggaacctt ccagaagtgg gcagctgtgg 2580 tggtaccttc tggagaggag cagagataca cctgccatgt gcagcatgag ggtctgccca 2640 agcccctcac cctgagatgg ggtaaggagg gagatggggg tgtcatgtct cttagggaaa 2700 gcaggagcct ctctggagac ctttagcagg gtcagggccc ctcaccttcc cctcttttcc 2760 cagagccatc ttcccagccc accgtcccca tcgtgggcat cattgctggc ctggttctcc 2820 ttggagctgt gatcactgga gctgtggtcg ctgctgtgat gtggaggagg aacagctcag 2880 gtggagaagg ggtgaagggt ggggtctgag atttcttgtc tcactgaggg ttccaagccc 2940 cagctagaaa tgtgccctgt ctcattactg ggaagcacca tccacaatca tgggccgacc 3000 cagcctgggc cctgtgtgcc agcacttact cttttgtaaa gcacctgtga caatgaagga 3060 cagatttatc accttgatta tggcggtgat gggacctgat cccagcagtc acaagtcaca 3120 ggggaaggtc cctgacgaca gatctcagga gggcgattgg tccagggccc acatctgctt 3180 tcttcatgtt tcctgatcct gccctgggtc tgcagtcaca catttctgga aacttctctg 3240 gggtccaaga ctaggaggtt cctctaggac cttaaggccc tggctccttt ctggtatctc 3300 acaggacatt ttcttcccac agatagaaaa ggagggagct actctcaggc tgcaagtaag 3360 tatgaaggag gctgatgcct gaggtccttg ggatattgtg tttgggagcc catgggggag 3420 ctcaaccacc ccacaattcc tcctctagcc acatcttctg tgggatctga ccaggttctg 3480 tttttgttct accccaggca gtgacagtgc ccagggctct gatgtgtctc tcacagcttg 3540 taaaggtgag agcttggagg gcctgatgtg tgttgggtgt tgggcggaac agtggacaca 3600 gctgtgctat ggggtttctt tgcattggat gtattgagca tgcgatgggc tgtttaaagt 3660 gtgacccctc actgtgacag atatgaagtt gttcatgaat tttttttcta tagtgtgaga 3720 cagctgcctt gtgtgggact gagaggcaag agttgttcct gcccttccct ttgtgacttg 3780 aagaaccctg actttgtttc tgcaaaggca cctgcatgtg tctgtgttca tgtaggcata 3840 atgtgaggag gtggggagac caccccaccc ccatgtccac catgaccctc ttcccacgct 3900 gacctgtgct ccctccccaa tcatctttcc tgttgcagag aggtggggct gaggtgtctc 3960 catctctgtc tcaacttcat ggtgcactga gctgtaactt cttccttccc tattaaaatt 4020 agaacctgag tataaattta ctttctcaaa ttcttgccat gagaggttga tgagttaatt 4080 aaaggagaag attcctaaaa tttgagagac aaaataaatg gaacacatga gaaccttcca 4140 gagtccacgt gttgcttatg ctgatttgtt gcaggggagg agactagatg gggctgtgcc 4200 cagtttctgt tccggccacc atgggcttta tgtggtcact gcttggctgg gtcatctttg 4260 ctgctccatt gtccttggcc cttcagtaga accttgtccc accaagaccc gtgattacag 4320 ggagttggat gtcacctagg gtggtccctg catacaaatc tccttgtggt agcaagagac 4380 aaattttcag acctgtccag gtcttgcctt cctcccaggg ctttttcctc aattgtattt 4440 tcgatttttc tccaatcttt ttaaaggaac cagattgtga catttgcaga gaggaggggt 4500 cccatagttt ctcatcatga ttaactttct gttggaactc ctcttctgct ctcctactct 4560 tcttcctgct ctaagttgta gtaatcctag tgctggctcc aatccaaact catagattta 4620 taaagcagag tctaatttag attcatatgt ggttggaaaa ttgtacccat aaggctaggg 4680 ttattgttcc tgaagagaaa tatatggttt tgtgctgaag tgtgcaggag ggttggtgtg 4740 ggaggaggga ggacacacaa gcagccctgg tgagaaaagc actggcggca tggatgtcca 4800 tgtgaactta tgttctttag ctgccacaaa acagcatttg ccctgtggct acattaataa 4860 aggtatgggc tttagaatag ggaggtgctc tacagtgatc attcattcaa ctgacatttg 4920 ttgtctgcta gggatatgac tgcttttgca tttagaaagc atcattaaag taaaaacaga 4980 aaaatttctg gggttatggt gcatacgttc tagatgcagg cttgtccaat ccgcggcttg 5040 tgggctgcat gtggcccagg acaattttga atgtgaggac ttttttgctt atctgtggtg 5100 aacctgagtc ctggagtgag tgcacccacc tccctcaggg tcaggagtga atgctttagg 5160 aaccctcctt ttcagtgacc tgccaaagat aaagggcaca tttactgtga taacccagag 5220 tatcagccaa gggggcttga ccttcaagga gttatgggaa agcttaataa agggtggtgt 5280 cccagggtca gaaaagatgg gcagacagca agagcactgc ttgatatcta tgataagcat 5340 gtaagaattg aggagcaagc ttcagattca gaatccagtg actaaggaca tatctatatc 5400 cctaagagaa a 5411 //