Dbfetch
ID KY856763; SV 1; linear; genomic DNA; STD; HUM; 6987 BP. XX AC KY856763; XX DT 22-MAR-2018 (Rel. 136, Created) DT 22-MAR-2018 (Rel. 136, Last updated, Version 2) XX DE Homo sapiens MHC class II antigen (HLA-DQB1) gene, HLA-DQB1*03:01:01 DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6987 RA Balz V., Krause S., Enczmann J., Fischer J.; RT "New variants of HLA-DQB1"; RL Unpublished. XX RN [2] RP 1-6987 RA Balz V., Krause S., Enczmann J., Fischer J.; RT ; RL Submitted (31-MAR-2017) to the INSDC. RL University Hospital Duesseldorf, Institute for Transplantation Diagnostics RL and Cell Therapeutics, Medical Faculty, Moorenstr. 5, Duesseldorf, NRW RL 40225, Germany XX DR MD5; fe2694e9058ef3b3da7706e25e0a8419. DR Ensembl-Gn; ENSG00000231286; homo_sapiens. DR Ensembl-Tr; ENST00000399088; homo_sapiens. DR Ensembl-Tr; ENST00000413089; homo_sapiens. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.4.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6987 FT /organism="Homo sapiens" FT /chromosome="6" FT /map="6p21.3" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>6987 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:01:01" FT mRNA join(<1..392,1841..2110,4739..5020,5538..5648,6769..>6987) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:01:01" FT /product="MHC class II antigen" FT exon <1..392 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:01:01" FT /number=1 FT 5'UTR <1..283 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:01:01" FT CDS join(284..392,1841..2110,4739..5020,5538..5648,6769..6782) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:01:01" FT /product="MHC class II antigen" FT /db_xref="GOA:S6B230" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:S6B230" FT /protein_id="AVN68384.1" FT /translation="MSWKKALRIPGGLRAATVTLMLAMLSTPVAEGRDSPEDFVYQFKA FT MCYFTNGTERVRYVTRYIYNREEYARFDSDVEVYRAVTPLGPPDAEYWNSQKEVLERTR FT AELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRW FT FRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQHGDVYTCHVEHPSLQNPITVEWRA FT QSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKGLLH" FT exon 1841..2110 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:01:01" FT /number=2 FT exon 4739..5020 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:01:01" FT /number=3 FT exon 5538..5648 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:01:01" FT /number=4 FT exon 6769..>6987 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:01:01" FT /number=5 FT 3'UTR 6783..>6987 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*03:01:01" XX SQ Sequence 6987 BP; 1775 A; 1641 C; 1685 G; 1886 T; 0 other; gctcttccat aattgagagg aaattttcac ctcaaatgtt catccagtgc aattggaaga 60 cgtcacagtg ccaggcactg gattgagaac cttcacaaaa aaaaatctgc ccagagacag 120 atgaggtcct tcagctccag tgctgattgg ttcctttcca agggaccatc caatcctacc 180 acgcatggaa acatccacag gtttttattc tttctgccag gtacatcaga tccatcaggt 240 ccgagctgtg ttgactacca ctacttttcc cttcgtctca attatgtctt ggaaaaaggc 300 tttgcggatc cccggaggcc ttcgggcagc aactgttacc ttgatgctgg cgatgctgag 360 caccccagtg gctgagggca gagactctcc cggtaagtgc agggcagctg ctctccagag 420 ccgccactct gggaacagac tctccttggg ctggggtatg gggatggtga tctcgattat 480 ctcagacaca atctttatca atatttcctc tgttttggga aagagagcta tgttgcattc 540 ccatttatct tttaatgatg aggtgaggac aatccaatcc catcctacag acttaagcct 600 ggaagaggag agaggagaga aaagaggaga caaagtgttc atttactacc agtgatagga 660 caaagtgagc atggggttat ttttgaagat atgaatttct ccaaagacac agcatgattt 720 gtcatttagg cgtgccccaa gactgcctgg actaactatt atgagatcct gcactgggaa 780 atgtaaggca gcaatggtgt ctgtagtccc cgtatttggg gaaaaggtgt ctgtattcct 840 gactcagtgg agcgtttgtg gaggcaaaat cttggtactg agggaagctg actggctgac 900 cacagacagg gagtcttcag gtttcactga tttatgggca aatggtgacc tgagtgggat 960 tcagagaccc gagttgatgg tggactaaat ttagtagaaa ggaggatgta aagaagagaa 1020 attacacata ctgtgaaacc actcatttca gacacagaac aatactttac ataaattctc 1080 tctcactcct tctaacatcc tgtgtgtaga tatcatgatt ttcttttaca caattatact 1140 tgtgacatgg atattctgtt acgtaacctg cccgagctgg tgactgccac agtttaatgg 1200 gattctagtt tatcaaattc aaaagcttgt gctctttcag tgaataaacg tttctttcta 1260 ggactcagag atctaggact cccttctttc taacacagaa gtgagtgaac ctcacagggc 1320 acttgggagg gtaaatccag gcatgggaag gaaggtattt tacccaggga ccaagagaat 1380 aggcatatca aaagaggaca ggtttaattc ctggacctgt ctcgtcattc ccttgaactc 1440 tcaggtttat gtggataact ttatctctga ggtacccagg agctccatgg aaaatgggat 1500 ttcatgcgag aacgccctga tccctctaag tgcagaggtc catgcaaaat caacccgact 1560 gcctcttcgc ttggttcaca ggcccagcca gacagggaca gggctttcct ccctttcctg 1620 cctgtaggaa ggcggattcc cgaagacccc cgagagggcg ggcagggctg ggcagagccc 1680 ccgggaggat cccaggtctg cagcgcgagg cacgggccgg cgggaactgg aggtcgcgcg 1740 ggcggttcca cagctccggg ccgggtcagg gcggcggctg cggggtggcc gggctggggc 1800 cgggccgggg ccggactgac cggccggtga ttccccgcag aggatttcgt gtaccagttt 1860 aaggccatgt gctacttcac caacgggacg gagcgcgtgc gttatgtgac cagatacatc 1920 tataaccgag aggagtacgc acgcttcgac agcgacgtgg aggtgtaccg ggcggtgacg 1980 ccgctggggc cgcctgacgc cgagtactgg aacagccaga aggaagtcct ggagaggacc 2040 cgggcggagt tggacacggt gtgcagacac aactaccagt tggagctccg cacgaccttg 2100 cagcggcgag gtgagcgtcg tcgccccgct gcgaggccca ctcttggccg gggccccgag 2160 tctctgcgct aggagggacg aggggggcga agcctctgga acctgagccg cgttcgttcc 2220 accccagggg acaggagttg gcggcgtggg tggtggggca ggtgcatagg aggggcaggg 2280 acctaggggc agagcagggg tacaggtaga gttggtcaaa ctgcctagtt ttgccccagc 2340 cttcccgtcc gtcagcctcg ccctctgctg tgcacgttct cgcctcgtgc cttatgcgtt 2400 tgcctcctcg tgccttgcct ttgctaagca gtcctctctg cccccaattt ctgccctctt 2460 cccctgcccg cccgcccgct agcactgccc cacccagcaa ggtccacgtg cactgctcgc 2520 gccgcaggaa gcttcaggct tggcctggtg gagttagggc tgctccacaa ctgtgcgcag 2580 ggcatccagc aattacagtt gtgaaataag atattttgac ttttggcttc aaattattat 2640 tcatcgtaat tccgttttct taaatggctc tcattcatgg cggagctctt tgaggtgaga 2700 gtgttttaat cattttatgg ccggtacctg acacattgac tggcatgtgg tataagctca 2760 ataatcttct gttaaattaa tgaataaatg tgctcagctg ccaatccact taggctcaag 2820 aaaaaccaga ggtaaacaga accttaaaaa tggactttta ttaattattt tctatcattt 2880 tgcttaattc tttaaagtaa actcttattg acttggatct aaatagtttg tgaatacaaa 2940 gtctgaggaa aaaagtgttt gctaaaaata aaaacaacac ttgaatgatg tttgtaaggc 3000 agttttaatt tcttagaaaa gctgaacaaa tggcacaatg caaagagcag aagttttgga 3060 ataaatagat tgaagccatt aaattattgg ataaaaatag tttcaggttg cttttggcct 3120 aggttctccc ctccccccat cactatccac ttcaggaata aacattctga aagttaattt 3180 tacccatata gtgagcactt atttctaagt tgccttatca aataccatct atgttatgtc 3240 atttaatctc gcagttgcct gtgcattaga gattagcatc accactttat atatcctaat 3300 attagtacat gataaacact ttaagtaatc agcccacaag tactcaccaa gaccttaagc 3360 ctcccaaagt acacaacatt cttacgttcc tcactacaca tctgtagagt caaagggaca 3420 taaagccttg ttaaagccag ttttgaccag aagcagcaat ggtctcttcc tgtttgatct 3480 ccatgttaat gggacaaaat gatactttca aggcattgaa aatttatgat taatcaatca 3540 aatttatgat taatcaatcc ctagtctgac tccagtgaga ttcacaaaac tttcagttta 3600 ctttatactc ccttgccttc ttttgactca catcatagtg ccggcaagta cttatatttt 3660 tgctatttca gttctatttc cataaaattt attttatcat cttttctcat aaatttgtgc 3720 cctctatttt tactcccaat ctgtgtaaga tgaacaaatc ttataagacc acatagctga 3780 ctgtgatttc aggtggactc caggaaggag aaccaaagaa aactttcagt ctttttaaga 3840 tgaacaaatc ttgtaagtcc ccacatagct gactgtgatt tcaggtggac tccaggaagg 3900 agaaccaaag aaaagttcaa gtccaagcag aaaccgtgat tccttccgga tgatggctca 3960 tgagtgccat ttaattgggg tgccacctgc tgtcctcagc aaatcccagc tatatgtata 4020 tgttcgcatt acaggctcat taacctaggc tgacctctgc aaggatctca gaatattttc 4080 tacagagaac atacatgata atatctgatt ttaggacaaa aaagtaattc tcaatagcaa 4140 gggaatggag tagggtagac agctagtaat taaactcact tgtgtgttaa aaataaatta 4200 aggaaaaaag aaaatgagag aacatattac taaataaaga aagcatacat taaatattta 4260 ctatagtttt acactaagag aataaaggaa atgcaataaa gtggcctgaa aggtaaagga 4320 tgagatgtgt aaaagaggcg gggaaagatg tgtcattttt tttttactat gagcagcaat 4380 ctgagaagat aaaggaatcg agttatgggc agacatgatg tttgatcagt gttatttgtt 4440 ttcaaggcct gcctactttt ttttcaaata ttacaaactt ttgaagtcac attctttttg 4500 ttttttgctg tctgttacta gatcgcacat tctgtaaagg cagggaccat ggtatgttgt 4560 ttatctttgg attctcagtg attgtcatat ttatgtttgt tgaatgaatc ttaatccaag 4620 acttgggctc caggtatctt tccattctgg ttccaaggag ggaccttcct cacagcaggc 4680 gtgctgtgtg gtgtcacatc tcactcctat atctttccct gtctgttact gccctcagtg 4740 gagcccacag tgaccatctc cccatccagg acagaggccc tcaaccacca caacctgctg 4800 gtctgctcag tgacagattt ctatccagcc cagatcaaag tccggtggtt tcggaatgac 4860 caggaggaga caaccggcgt tgtgtccacc ccccttatta ggaacggtga ctggaccttc 4920 cagatcctgg tgatgctgga aatgactccc cagcatggag acgtctacac ctgccacgtg 4980 gagcacccca gcctccagaa ccccatcacc gtggagtggc gtaaggggat attgagtttc 5040 tgttactatg ggccccacaa gacaaagggc agagctcatt ctgacccatc ccttcccatc 5100 tcttatccct gatgtcacta ctgagctggg aatcacagga gactagagca cttcttcctc 5160 catggcaagt gcatcagaag aatcctgatc tcatcacctt tccagatgct agggaaatta 5220 ctctacatac tgtttctctg gatcccagtc ctgatagctc ggagggactg atcattaggg 5280 ctggtgactg ggatcttagg gtttaaggtt atggatgagc tcctgaggag tggagatctg 5340 cttctccact ctctcaccta ctcactgtac ccaaggacct attggctggc ctttcccctc 5400 ccttaggggt ggtctgaatg gaggactagt ttcctttgac gccttcacct cctgaatctc 5460 agactggact tcagctcctc agcagggatg ctatggggtg tggggacaaa cactgacact 5520 caggctctgc ttcttagggg ctcagtctga atctgcccag agcaagatgc tgagtggcat 5580 tggaggcttc gtgctggggc tcatcttcct cgggctgggc cttattatcc atcacaggag 5640 tcagaaaggt gaggaacccc aagggaaaag gggaagatgg gctgtgaccc agaccctctg 5700 ttcagagagg tcctgtctct agatgtggct ctttcctcct gaccccgaga ggaagaaagc 5760 tgagctggag gtgggaggag acaggacaag attggaggag gcattggaat ctgattttac 5820 tagttgaaag gtagccctgt cacacagctc actgatagag cttattgaag gacatcctta 5880 cctttcatca ttgtctcatt ggctcctttc caaaagcttc ctccattaag agggtcagag 5940 ccttggcctc cttgccttct agtgacaatt tcctttgttt taggggattt taaattaggg 6000 tgcttaaggc cttgaaggac atgggtggga agagaatata actctaatta agtcacatgt 6060 gtcattttcc attggggtga gagagtggct gtttgtgtaa tgagaccttt ctctgcataa 6120 cttccttttg taagacctca agggcctcca ccagcaggta atatttcagc cgtgatccag 6180 tgtggggagg gcacagatgt aagagggaag agcatgagct gagtgtacct gaccacagtg 6240 gtctccgttc atggtatatt tgctgctatg aggatcaaga cttaggggcg aagtttgcca 6300 gtttctagga atctccagag gctgttcccc agaaccaagc cttaactttg gtggcatctt 6360 cctgtgaaat gtgaagccag aaccacagct taaatgttag acactaggat gatgcccact 6420 ttgtgccaca tgttggtggc tactgcctgt aggcattttc cagtgactga aagaggctgc 6480 tagtggtagg gatgaggtat catccaattt cctaaaaaga ccgaaccctt catattcccc 6540 agaagagtaa cagctgttcc cccacctccc tcacatctgc atcaagctga agttctgtgt 6600 cttcatgagc tgatttcacc tttgcacaga tcttggggga ggtgatgaca atacactctg 6660 gacctcagct ttgtctgtct gaagctgcag ggggcccctg aggggtgggg gagatggcag 6720 gcccaccagc gtaccctgtg ctgatcatcc ctcttctctc ttctccaggg ctcctgcact 6780 gactcctgag actattttaa ctgggattgg ttatcacttt tctgtaacgc ctgcttgtcc 6840 ctgcccagaa ttcccaactg cctgtgtcag cctgtccccc tgagatcaga gtcctacagt 6900 ggctgtcacg cagccaccag gtcatctcct ttcatcccca ccccaaggcg ctggctgtga 6960 ctctgcttcc tgcactgacc cagagcc 6987 //