Dbfetch
ID KY653748; SV 1; linear; genomic DNA; STD; HUM; 7005 BP. XX AC KY653748; XX DT 07-JUL-2017 (Rel. 133, Created) DT 24-FEB-2018 (Rel. 135, Last updated, Version 2) XX DE Homo sapiens isolate BY01468 MHC class II antigen (HLA-DQB1) gene, DE HLA-DQB1*06:09:01:01v allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RC DOI: 10.1111/tan.13210 RP 1-7005 RX DOI; .1111/tan.13210. RX PUBMED; 29327506. RA Hurley C.K., Hou L., Lazaro A., Gerfen J., Enriquez E., Galarza P., RA Rodriguez Cardozo M.B., Halagan M., Maiers M., Behm D., Ng J.; RT "Next generation sequencing characterizes the extent of HLA diversity in an RT Argentinian registry population"; RL HLA. 91(3):175-186(2018). XX RN [2] RP 1-7005 RA Lazaro A.M., Hou L., Gerfen J., Hurley C.K.; RT ; RL Submitted (23-FEB-2017) to the INSDC. RL Oncology, Georgetown University, 3970 Reservoir Rd, N.W., Washington, DC RL 20057, USA XX DR MD5; 42039ffaef83abf7c8999c4582b6eaf5. XX CC ##Assembly-Data-START## CC Assembly Method :: Assign TruSight v. HLA2.1.0.934; GenDex v. CC V1.7.0.2937; Sequencher v. V5.4.1 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7005 FT /organism="Homo sapiens" FT /isolate="BY01468" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <517..>6888 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:01v" FT mRNA join(<517..625,2057..2326,4876..5157,5667..5777, FT 6875..>6888) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:01v" FT /product="MHC class II antigen" FT CDS join(517..625,2057..2326,4876..5157,5667..5777,6875..6888) FT /codon_start=1 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*06:09:01:01v" FT /product="MHC class II antigen" FT /db_xref="GOA:Q5Y7B5" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:Q5Y7B5" FT /protein_id="ASF62191.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVYQFKG FT MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPVAEYWNSQKEVLERTR FT AELDTVCRHNYEVGYRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVQW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGLLH" XX SQ Sequence 7005 BP; 1782 A; 1602 C; 1684 G; 1937 T; 0 other; ctttgctctt ctccccagga cttaaggctc ttcagcgtgt ctaagacaac agcagtaaaa 60 atttctgtga cagcaatttt ctctcccctg aaatatgatc cccacctaat ttgctttatt 120 aaaaatccca agtataataa caactggttt ttaacaatat tacagagatg tttactgttg 180 aatcgcattt ttttcttttg cctctcaaaa tccccgaggc attcgttctt cagctcttct 240 ataatcgaga ggaaattttc acctcagatg ttcatccagt acaatttgaa gacgtcacag 300 tgccaggcac tggattgaga accttcacaa aaaaaatgtc tgcccagaga cagatgaggt 360 ccttcagctc cagtgctgat tggttctttt ccgagggacc atccaatcct gccactcacg 420 gaaacatcca caggttttta ttctttctgc caggtacatc agatccatca ggtccgagct 480 gtgttgacta ccactgcttt tcccttcgtc tcagttatgt cttggaagaa ggctttgcgg 540 atccccggag accttcgggt agcaactgtc accttgatgc tggcgatgct gagctcccta 600 ctggctgagg gcagagactc tcccggtaag tgcagggcag ctgctctcca gagccgccac 660 tctgggaaca ggctctcctt gggctggggt atgggggatg gtgatctcta tgatcttgga 720 cacaatcttt catcaacatt tcctctctct tgggaaagaa agctatgttg cattcccatt 780 tatcttttag tgatgagatg aggacaatcc aatccccatc ctacaggctt aagcctggaa 840 gaggaggaga gaggagagaa agaggagata aagtgtacat ttactaccag cgataggaca 900 aagtgagcat ggggttattt ttgaagatat gaatttctcc aaagacacag caggatttgt 960 catttaggcg tgccccaaga ctgcctggac ttaggattat gagatcctgc attggaaaat 1020 gtgaggcagc aatggtgtct gtagtttctg tatttgagga aaatttgtct ctattcctga 1080 ccgagtggag catttgtgga ggcaaaatct tggtgctgag ggaagctgac tggctgacca 1140 cagagaggga gtcttcgggt ttcactgatt tatgggcaaa tggtgacttg agtgggattc 1200 agagacccga gttaatggtg gactgaattt agtaggaagg aggatgtaaa gaagggaaat 1260 aacacatatt gtgaaaccac tcacttcaga cagaacaata ctttatataa cttctctctc 1320 actccttcta acatcctgtg tgtagatatc atgattttct tttacacaat tatacttgtg 1380 atatggatat tctgttacat aacctgccca aactggtgac tgccacagtt taattggaat 1440 ctagtttatc aaattcaaaa gcttgtgctc tttccatgaa taaatgtctc tatctaggac 1500 tcagaggtgt aggtcctttc caacatagaa gggagtgaac ctcaacggga cttgggaggg 1560 taaatctagg catgggaagg aaggtatttt acccagggac caagagaata cgcgtgtcag 1620 aacgaggcca ggcttaattc ctggacctat ctcgtcattc cgttgaactc tcagatttat 1680 gtggataact ttatctctga ggtatccagg agcttcatga aaaatgggat ttcatgcgag 1740 aacgccctga tccctctaag tgcagaggtg catgtaaaat cagcccgact gcctcttcgc 1800 tgggttcaca ggctcaggca gggacagggc tttcctccct ttcctggatg taggaaggca 1860 gattccagaa gcccgcaaag aaggcgggca gagctgggca gagccgccgg gaggatccca 1920 ggtctggagc gccaggcacg ggcgggcggg aactggaggt cgcgcgggcg gttccacagc 1980 tccaggccgg gtcagggcgg cggctgcggg ggcggccggg ctggggcctg actgaccggc 2040 cggtgattcc ccgcagagga tttcgtgtac cagtttaagg gcatgtgcta cttcaccaac 2100 gggacggagc gcgtgcgtct tgtaaccaga tacatctata accgagagga gtacgcacgc 2160 ttcgacagcg acgtgggggt gtaccgggcg gtgacgccgc aggggcggcc tgttgccgag 2220 tactggaaca gccagaagga agtcctggag aggacccggg cggagttgga cacggtgtgc 2280 agacacaact acgaggtggg gtaccgcggg atcctgcaga ggagaggtga gcgtcgtcgc 2340 ccctccgtga ggcgcaccct tggccgggac cccgagtctc tgtgccggga ggggcgatgg 2400 gggcgaggtc tctgaaatct gagcccagtt cattccaccc caggggaaag gaggcggcgg 2460 cggggtggtg ggggcaggtg catcggaggg gcggggacct agggcagagc agggggacaa 2520 gcagagttgg ccaggctgcc tagtgtcccc cccagcctcc ccgtccgtcg gcctcgtcct 2580 ctgctctgca cgtttctcgc ctcgtgcctt atgcgtttgc ctcctcgtgc cttaccttcg 2640 ctaagcagtt ctctctgccc ccagtgccca ccctcttccc ctgcccgccg gcctcgctag 2700 cactgcccca cccagcaagg cccacgtgcg cagcttgcgc cgcaggaagc ttcaggcttg 2760 gcctggtgga gttagggctg ccccacaact gcgcgcaggg catccagcaa ttacagttgc 2820 aaaataagat attttgactt tttggcttca aatcattatt catcgtaatt ctgttttctt 2880 aaatggctac cactaatggc ggagatcttt gaggcgagag actgtttaat tattgcatgc 2940 ctggtacctg acacattgac tggtatgtgg tgtgagctca atgatcttct gttaaattca 3000 tgaataaatg tactcagctg ccaatccagt taggttcaag aaaaaaacag aggcttacaa 3060 atgaacttta tcaattattt tctatcattt tgcttaatgc tttcaagtaa actcttactg 3120 acttggatct taatagaatt tgtgaataca aagtctgagg aaaatgtgtt tgctaaaaat 3180 aaaaacaatg cttgaatgat gttgtaaggc agagttttaa tttcttagaa aagctgaaca 3240 aatagcacta tgcaaagatc agaagtttgg gaataaatag gttgaagcta ttaaattatt 3300 ggataaaaat agtttcaggt tgcttttggc ctaggttatc ccctcctccc atcactatcc 3360 acttcaggaa taaacattct gaaagtcaat tttacccatt caggaagcac ttatttctag 3420 acagttgcct tatcaaatac catctatatt atgtcattta atctcgcagc tacctgtgca 3480 ttagagatta gcatcaccac tttatatatc ctaatattgg tacatgataa acactttaag 3540 taatcagccc acaattactc accaagatct taagcctccc aaagtacaca acattcttat 3600 gttcctcact acacatctgt agagtctaag ggatgtaagg ccttgttaaa gccagttttg 3660 accagaagca gcaatgagtc tattcctgtt tgttctccat gttaatgcgg cattgaaaat 3720 tcatgattaa tcaatcccta gtctgacccc agtgttatct atgcaggttc acaaaacttt 3780 tagtttgctt tacactccct tgccttcttt tgactcacat cctaatgcca gcaagtactt 3840 atatttttgc tatttcagtt ttatttccat gaaatttatt ttatcatctt ttctcataaa 3900 tttgtgccct ctatttttac tcccagtctg ttgaagatga acaaatctta taaggccaca 3960 tagctgactc tgatttcagt tggcctccag gaaggagaac ctaaagaaaa gttcaagtcc 4020 aagcagaaac catgattcct tccggatgat ggctcaagag tgccatttaa ttggggtgcc 4080 acctgctgac ctcagcaaat cccagttata tgtatatgtt cacattacag gctcattagc 4140 ccaggccgac ctctgcacgg atctcagaat attttctgtg gagaacatac acgataatgt 4200 ctgatttcag aacaagaaag taattgtcaa tagcaaggaa atggagtagg gtagacagct 4260 agtaattaaa ctcacttgtg cgttaaaaag aaattaagga aaaaaagaaa atgagagaac 4320 atattactaa ataaagaaag cacacattaa atatttgcta tagtttcaca ctaagagaat 4380 aaaggaaatg tgataaagtg gcctaaaagg taaaggatga gatgtgtaaa agaggcgggg 4440 aaagatgtgt catttttttt actatgagca gcaatctgag aagataaagg aattgagttg 4500 tggacaaaca tgatgtttga tcaagggtta tttgttttga aggcctgcct actttttttt 4560 caaatattac aaacttttga aataacattc tacttttttt tcaaatatta caaacttttg 4620 aaataacatt ctttttgttt tttgctgtct gttactagat tgcacattct ataaatgcag 4680 ggaccatggt atgttattta tctttgaatt ctcagtgatt gtcaaattta tatttgttga 4740 atgaacctta atccaagact tggactccag gtatctttcc actctggtcc aaggagggat 4800 ccttcctcat ggtagacgtg gtgtgtgttc tcacatctca ctcctatgtc ttttcctgtc 4860 tgttactgcc ctcagtggag cccacagtga ccatctcccc atccaggaca gaggccctca 4920 accaccacaa cctgctggtc tgctcggtga cagatttcta tccaggccag atcaaagtcc 4980 agtggtttcg gaatgatcag gaggagacag ccggcgttgt gtccaccccc cttattagga 5040 atggtgactg gactttccag atcctggtga tgctggaaat gactccccag cgtggagatg 5100 tctacacctg ccacgtggag caccccagcc tccagagccc catcaccgtg gagtggcgta 5160 aggggatatt gagtttctgt tactatgggc ccacaagaca aagagctcct tctgacccat 5220 tccttcccat ctcttatccc tgatgtcact actgagctgg gaatcacagg agactagagc 5280 acctcttgct ccatggcaag tgcatcagaa gaatcctggt ctcatcacct ttccagatgc 5340 tagggaaatt actctgcata ctgttgctct gaatcccagt cctgatagct ctgagggact 5400 gattcttagg gctggtgact gggatcttag ggtctaaggt tatggatgag ttcttgaaga 5460 gcagagattt gcttccccac tctctcacct attcactgta tccaaggacc tattggctgg 5520 tctttcccct ccttaggggt ggtctgaatg gagaactagt ttcctttgat gccttcacct 5580 tctgcacctc agactggact tcaactcctc agcagggatg ctatggggtg tggggacaaa 5640 cacagacact cagttctgct ctttaggggc tcagtctgaa tctgcccaga gcaagatgct 5700 gagtggcgtt ggaggcttcg tgctggggct gatcttcctt gggctgggcc ttatcatccg 5760 tcaaaggagt cagaaaggtg aggaacccca ggggaaaagg ggaagatggg ctgtgaccca 5820 gaccctctgt tcagagtggt cctgtctgta gattagctct ttcctcctca ccctgagagg 5880 aagtgcgagg agacaggaca agatgggagg aggcattgga atctgatttt actggttgaa 5940 aggtagcgct gtcacagagc tgactgatag agcttattcc agggcatcct taccattcat 6000 cattgtctca ctggctcctt tccaaaagct tcctccatta agagggtcag agcctcaact 6060 tcctttcttt ctagtgacaa tttcctttgt tttaggggat tttaaattag ggtgctgaag 6120 gcctggaaga acatgggtgg gaagagaatg taactctaag tcatgtgtgt cattttcctt 6180 tggggtgaga gagtggctgt ttgtgtaatg agacctttct ctgcataact tccttttgta 6240 agacctcaag ggcctccacc agcaggtaat atttcagcca tgatccagtg tgggtaggca 6300 caggtataag agggaagagc atgagctgag tgtacctgac cacagtggtc catgttcatg 6360 gcctatttgc tgctatgagg atcaagactt aggggagaag tttgccagtt tctaggaatc 6420 tccagacatt gttccccaga accaagcctt aactttggtg gcatcttctt gtgaaatgtg 6480 gagccagaac cacagcttaa atgttagaca ctaggatgat gcccactttg tgccacatga 6540 tggtggctac tgcctgtagg cattttccag tgactgaaag aggctgctag tggtcgggaa 6600 gagatatcat ccaatttcct aaaaagactg aacccttcat attccccaga agaataacag 6660 ctgttcccca cctccctcac atctgcatca agctgaagtt ctgtgtcctc atgagctgat 6720 ttcacctttg cacagatctt gggggaggtg atgacaatac accctggacc tcaactttct 6780 ctgtctgaag ctgcaggggg ccgctgaagg gtgggggaga tggcaggccc accaggatac 6840 cctgtgctga tcaatgctct tctctcttct ccagggcttc tgcactgact cctgagacta 6900 ttttaactag gattggttat cactcttctg tgatgcctgc ttgtgcctgc ccagaattcc 6960 cagctgcctg tgtcagcttg tccccctgag atcaaagtcc tacag 7005 //