Dbfetch
ID KY499648; SV 1; linear; genomic DNA; STD; HUM; 3012 BP.
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AC KY499648;
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DT 17-JAN-2018 (Rel. 135, Created)
DT 17-JAN-2018 (Rel. 135, Last updated, Version 1)
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DE Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*03 allele, partial
DE sequence.
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KW .
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OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
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RN [1]
RP 1-3012
RA Balz V., Krause S., Enczmann J., Fischer J.;
RT "More than 130 novel variants of HLA class 1 genes detected in German Stem
RT Cell Donor Registry and Terasaki samples";
RL Unpublished.
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RN [2]
RP 1-3012
RA Balz V., Krause S., Enczmann J., Fischer J.;
RT ;
RL Submitted (25-JAN-2017) to the INSDC.
RL University Hospital Duesseldorf, Institute for Transplantation Diagnostics
RL and Cell Therapeutics, Medical Faculty, Moorenstr. 5, Duesseldorf, NRW
RL 40225, Germany
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DR MD5; 1d94258d008a06fa2431b566de5014c0.
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CC ##Assembly-Data-START##
CC Assembly Method :: NGSEngine v. 2.4.0
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1..3012
FT /organism="Homo sapiens"
FT /chromosome="6"
FT /map="6p21"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene 1..>3012
FT /gene="HLA-C"
FT /allele="HLA-C*03"
FT /note="MHC class I antigen"
FT variation 1712^1713
FT /gene="HLA-C"
FT /replace="tgaggccaccc"
FT /note="compared to HLA-C*03:04:01:01; deletion results in
FT frameshift"
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SQ Sequence 3012 BP; 566 A; 862 C; 963 G; 621 T; 0 other;
ttctagagaa gccaatcagc gtctccgcag tcccggttct gaagtcccca gtcacccacc 60
cggactcaga ttctccccag acgccgagat gcgggtcatg gcgccccgaa ccctcatcct 120
gctgctctcg ggagccctgg ccctgaccga gacctgggcc ggtgagtgcg gggttgggag 180
ggaatcggcc tctgcggaga ggagcgaggg gcccgcccgg cgagggcgca ggacccgggg 240
agccgcgcag ggaggagggt cgggcgggtc tcagcccctc ctcgccccca ggctcccact 300
ccatgaggta tttctacacc gctgtgtccc ggcccggccg cggggagccc cacttcatcg 360
cagtgggcta cgtggacgac acgcagttcg tgcggttcga cagcgacgcc gcgagtccga 420
gaggggagcc gcgggcgccg tgggtggagc aggaggggcc ggagtattgg gaccgggaga 480
cacagaagta caagcgccag gcacagactg accgagtgag cctgcggaac ctgcgcggct 540
actacaacca gagcgaggcc ggtgagtgac cccggcccgg ggcgcaggtc acgacccctc 600
ctcatccccc acggacggcc cgggtcgccc caagtctccc ggtctgagat ccaccccgag 660
gctgcggaac ccgcccagac cctcgaccgg agagagcccc agtcaccttt acccggtttc 720
attttcagtt taggccaaaa tccccgcggg ttggtcgggg cggggcgggg ctcgggggac 780
ggggctgacc gcgggggcgg ggccagggtc tcacatcatc cagaggatgt atggctgcga 840
cgtggggccc gacgggcgcc tcctccgcgg gtatgaccag tacgcctacg acggcaagga 900
ttacatcgcc ctgaacgagg atctgcgctc ctggaccgcc gcggacacgg cggctcagat 960
cacccagcgc aagtgggagg cggcccgtga ggcggagcag ctgagagcct acctggaggg 1020
cctgtgcgtg gagtggctcc gcagatacct gaagaatggg aaggagacgc tgcagcgcgc 1080
gggtaccagg ggcagtgggg agccttcccc atctcctgta gatctcccgg gatggcctcc 1140
cacgaggagg ggaggaaaat gggatcagcg ctagaatatc gccctccctt gaatggagaa 1200
tgggatgagt tttcctgagt ttcctctgag ggccccctct gctctctagg acaattaagg 1260
gatgaagtcc ttgaggaaat ggaggggaag acagtcccta gaatactgat caggggtccc 1320
ctttgaccac tttgaccact gcagcagctg tggtcaggct gctgaccttt ctctcaggcc 1380
ttgttctctg cctcacgctc aatgtgtttg aaggtttgat tccagctttt ctgagtcctt 1440
cggcctccac tcaggtcagg accagaagtc gctgttcctc cctcagagac tagaactttc 1500
caatgaatag gagattatcc caggtgcctg tgtccaggct ggcgtctggg ttctgtgccc 1560
ccttccccac cccaggtgtc ctgtccgttc tcaggatggt cacatgggcg ctgttggagt 1620
gtcgcaagag agatacaaag tgtctgaatt ttctgactct tcccgtcaga acacccaaag 1680
acacacgtga cccaccatcc cgtctctgac catgaggtgc tgggccctgg gcttctaccc 1740
tgcggagatc acactgacct ggcagtggga tggggaggac caaactcagg acactgagct 1800
tgtggagacc aggccagcag gagatggaac cttccagaag tgggcagctg tggtggtgcc 1860
ttctggagaa gagcagagat acacgtgcca tgtgcagcac gaggggctgc cggagcccct 1920
caccctgaga tggggtaagg agggggatga ggggtgatgt gtcttctcag ggaaagcaga 1980
agtcctggag cccttcagcc aggtcagggc tgaggcttgg gggtcagggc ccctcacctt 2040
cccctccttt cccagagccg tcttcccagc ccaccatccc catcgtgggc atcgttgctg 2100
gcctggctgt cctggctgtc ctagctgtcc taggagctgt ggtggctgtt gtgatgtgta 2160
ggaggaagag ctcaggtagg gaaggggtga ggagtggggt ctgggttttc ttgttccact 2220
gggagtttca agccccaggt agaagtgtgc cccacctcgt tactggaagc accatccaca 2280
catgggccat cccagcctgg gaccctgtgt gccagcactt actctgttgt gaagcacatg 2340
acaatgaagg acagatgtat caccttgatg attatggtgt tggggtcctt gattccagca 2400
ttcatgagtc aggggaaggt ccctgctaag gacagacctt aggagggcag ttgctccaga 2460
acccacagct gctttccccg tgtttcctga tcctgccctg ggtctgcagt catagttctg 2520
gaaacttctc ttgggtccaa gactaggagg ttcccctaag atcgcatggc cctgactcct 2580
ccctgtcccc tcacagggca ttttcttccc acaggtggaa aaggagggag ctgctctcag 2640
gctgcgtgta agtgatggcg gtgggcgtgt ggaggagctc acccacccca taattcctct 2700
tgtcccacat ctcctgcggg ctctgaccag gtcttttttt ttgttctacc ccagccagca 2760
acagtgccca gggctctgat gagtctctca tcgcttgtaa aggtgagatt ctggggagct 2820
gaagtggtcg ggggtggggc agagggaaaa ggcctaggta atggggatcc tttgattggg 2880
acgtttcgaa tgtgtggtga gctgttcaga gtgtgatcac ttaccatgac tgacctgaat 2940
ttgttcatga ctattgtgtt ctgtagcctg agacagctgc ctgtgtggga ctgagatgca 3000
ggatttcttc ac 3012
//