Dbfetch
ID KY419452; SV 1; linear; genomic DNA; STD; HUM; 3135 BP.
XX
AC KY419452;
XX
DT 26-AUG-2017 (Rel. 133, Created)
DT 26-AUG-2017 (Rel. 133, Last updated, Version 1)
XX
DE Homo sapiens MHC class I antigen (HLA) gene, HLA-A*26:01New allele,
DE complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-3135
RA Balz V., Krause S., Enczmann J., Fischer J.;
RT "More than 130 novel variants of HLA class 1 genes detected in German Stem
RT Cell Donor Registry and Terasaki samples";
RL Unpublished.
XX
RN [2]
RP 1-3135
RA Balz V., Krause S., Enczmann J., Fischer J.;
RT ;
RL Submitted (02-JAN-2017) to the INSDC.
RL University Hospital Duesseldorf, Institute for Transplantation Diagnostics
RL and Cell Therapeutics, Medical Faculty, Moorenstr. 5, Duesseldorf, NRW
RL 40225, Germany
XX
DR MD5; 037f9307bb640ba5773c0b069e546e45.
DR Ensembl-Gn; ENSG00000206505; homo_sapiens.
DR Ensembl-Tr; ENST00000383605; homo_sapiens.
DR Ensembl-Tr; ENST00000549224; homo_sapiens.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: NGSengine v. 2.4.0
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..3135
FT /organism="Homo sapiens"
FT /chromosome="6"
FT /map="6p21.3"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <1..>3135
FT /gene="HLA"
FT /allele="HLA-A*26:01New"
FT mRNA join(<1..209,340..609,851..1126,1727..2002,2102..2218,
FT 2657..2689,2832..2879,3049..>3135)
FT /gene="HLA"
FT /allele="HLA-A*26:01New"
FT /product="MHC class I antigen"
FT exon <1..209
FT /gene="HLA"
FT /allele="HLA-A*26:01New"
FT /number=1
FT 5'UTR <1..136
FT /gene="HLA"
FT /allele="HLA-A*26:01New"
FT CDS join(137..209,340..609,851..1126,1727..2002,2102..2218,
FT 2657..2689,2832..2879,3049..3053)
FT /codon_start=1
FT /gene="HLA"
FT /allele="HLA-A*26:01New"
FT /product="MHC class I antigen"
FT /db_xref="GOA:Q5SPM2"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:Q5SPM2"
FT /protein_id="ASU50343.1"
FT /translation="MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRANLGT
FT LRGYYNQSEDGSHTIQRMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMA
FT AQITQRKWETAHEAEQWRAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHE
FT ATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRY
FT TCHVQHEGLPKPLTLRWEPSSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRK
FT GGSYSQAASSDSAQGSDMSLTACKV"
FT exon 340..609
FT /gene="HLA"
FT /allele="HLA-A*26:01New"
FT /number=2
FT exon 851..1126
FT /gene="HLA"
FT /allele="HLA-A*26:01New"
FT /number=3
FT exon 1727..2002
FT /gene="HLA"
FT /allele="HLA-A*26:01New"
FT /number=4
FT exon 2102..2218
FT /gene="HLA"
FT /allele="HLA-A*26:01New"
FT /number=5
FT exon 2657..2689
FT /gene="HLA"
FT /allele="HLA-A*26:01New"
FT /number=6
FT exon 2832..2879
FT /gene="HLA"
FT /allele="HLA-A*26:01New"
FT /number=7
FT exon 3049..>3135
FT /gene="HLA"
FT /allele="HLA-A*26:01New"
FT /number=8
FT 3'UTR 3054..>3135
FT /gene="HLA"
FT /allele="HLA-A*26:01New"
XX
SQ Sequence 3135 BP; 600 A; 901 C; 974 G; 660 T; 0 other;
gatactcacg acgcggaccc agttctcact cccattgggt gtcgggtttc cagagaagcc 60
aatcagtgtc gtcgcggtcg cggttctaaa gtccgcacgc acccaccggg actcagattc 120
tccccagacg ccgaggatgg ccgtcatggc gccccgaacc ctcgtcctgc tactctcggg 180
ggctctggcc ctgacccaga cctgggcggg tgagtgcggg gtcgggaggg aaacggcctc 240
tgtggggaga agcaaggggc ccgcccggcg ggggcgcagg acccgggaag ccgcgcctgg 300
aggagggtcg ggcgggtctc agccactcct cgcccccagg ctcccactcc atgaggtatt 360
tctacacctc cgtgtcccgg cccggccgcg gggagccccg cttcatcgcc gtgggctacg 420
tggacgacac gcagttcgtg cggttcgaca gcgacgccgc gagccagagg atggagccgc 480
gggcgccgtg gatagagcag gaggggccgg agtattggga ccggaacaca cggaatgtga 540
aggcccactc acagactgac cgagcgaacc tggggaccct gcgcggctac tacaaccaga 600
gcgaggacgg tgagtgaccc cggcccgggg cgcaggtcac gacccctcat cccccacgga 660
cgggccaggt cgcccacagt ctccgggtcc gagatccgcc ccgaagccgc gggaccccga 720
gacccttgcc ccgggagagg cccaggcgcc tttacccggt ttcattttca gtttaggcca 780
aaaatccccc cgggttggtc ggggcggggc ggggctcggg ggaccgggct gacctcgggg 840
tccgggccag gttctcacac catccagagg atgtatggct gcgacgtggg gccggacggg 900
cgcttcctcc gcgggtacca gcaggacgct tacgacggca aggattacat cgccctgaac 960
gaggacctgc gctcttggac cgcggcggac atggcggctc agatcaccca gcgcaagtgg 1020
gagacggccc atgaggcgga gcagtggaga gcctacctgg agggccggtg cgtggagtgg 1080
ctccgcagat acctggagaa cgggaaggag acgctgcagc gcacgggtac caggggccac 1140
ggggcgcctc cctgatcgcc tgtagatctc ccgggctggc ctcccacaag gaggggagac 1200
aattgggacc aacactagaa tatcgccctc cctctggtcc tgagggagag gaatcctcct 1260
gggtttccag atcctgtacc agagagtgac tctgaggttc cgccctgctc tctgacacaa 1320
ttaagggata aaatctctga aggaatgacg ggaagacgat ccctcgaata ctgatgagtg 1380
gttccctttg acacacaccg gcagcagcct tgggcccgtg acttttcctc tcaggccttg 1440
ttctctgctt cacactcaat gtgtgtgggg gtctgagtcc agcacttctg agtccctcag 1500
cctccactca ggtcaggacc agaagtcgct gttccctctt cagggactag aattttccac 1560
ggaataggag attatcccag gtgcctgtgt ccaggctggt gtctgggttc tgtgctccct 1620
tccccatccc aggtgtcctg tccattctca agatagccac atgtgtgctg gaggagtgtc 1680
ccatgacaga tgcaaaatgc ctgaatgttc tgactcttcc tgacagacgc ccccaagacg 1740
catatgactc accacgctgt ctctgaccat gaggccaccc tgaggtgctg ggccctgagc 1800
ttctaccctg cggagatcac actgacctgg cagcgggatg gggaggacca gacccaggac 1860
acggagctcg tggagaccag gcctgcaggg gatgggacct tccagaagtg ggcgtctgtg 1920
gtggtgcctt ctggacagga gcagagatac acctgccatg tgcagcatga gggtctgccc 1980
aagcccctca ccctgagatg gggtaaggag ggagacgggg gtgtcatgtc ttttagggaa 2040
agcaggagcc tctctgacct ttagcagggt cagggcccct caccttcccc tcttttccca 2100
gagccgtctt cccagcccac catccccatc gtgggcatca ttgctggcct ggttctcttt 2160
ggagctgtga tcgctggagc tgtggtcgct gctgtgatgt ggaggaggaa gagctcaggt 2220
ggggaaggga tgaagggtgg gtctgagatt tcttgtctca ctgagggttc caagacccag 2280
gtagaagtgt gccctgcctc gttactggga agcaccatcc acaattatga gcctacccag 2340
cctgggccct gtgtgccagc acttactctt ttgtaaagca cctgttaaaa tgaaggacag 2400
atttatcacc ttgattacgg cggtgatggg acctgatccc agcagtcaca agtcacaggg 2460
gaaggtccct gaggaccttc aggagggcgg ttggtccagg acccacacct gctttcttca 2520
tgtttcctga tcccgccctg ggtctgcagt cacacatttc tggaaacttc tctgaggtcc 2580
aagacttgga ggttcctcta ggaccttaag gccctggctc ctttctggta tctcacagga 2640
cattttcttc ccacagatag aaaaggaggg agctactctc aggctgcaag taagtatgaa 2700
ggaggctgat gcctgaggtc cttgggatat tgtgtttggg agcccgtggg ggagctcacc 2760
caccccacaa ttcctcctct agccacatgt tctgtgggat ctgaccaggt tctgtttttg 2820
tcctacccca ggcagtgaca gtgcccaggg ctctgatatg tctctcacag cttgtaaagg 2880
tgagagcctg gagggcctga tgtgtgttgg gtgttgggcg gaacagtgga cgcagctgtg 2940
ctatggggtt tctttgcatt ggatgtattg agcatgcgat gggctgttta aagtgtgact 3000
cctcactgtg acagatacga atttgttcat gaatattttt ttctatagtg tgagacagct 3060
gccttgtgtg ggactgagag gcaagatttg ttcctgccct tccctttgtg acttgaagaa 3120
ccctgacttt gtttc 3135
//