Dbfetch
ID KY419450; SV 1; linear; genomic DNA; STD; HUM; 3136 BP.
XX
AC KY419450;
XX
DT 26-AUG-2017 (Rel. 133, Created)
DT 26-AUG-2017 (Rel. 133, Last updated, Version 1)
XX
DE Homo sapiens MHC class I antigen (HLA) gene, HLA-A*26:01:01New3 allele,
DE complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-3136
RA Balz V., Krause S., Enczmann J., Fischer J.;
RT "More than 130 novel variants of HLA class 1 genes detected in German Stem
RT Cell Donor Registry and Terasaki samples";
RL Unpublished.
XX
RN [2]
RP 1-3136
RA Balz V., Krause S., Enczmann J., Fischer J.;
RT ;
RL Submitted (02-JAN-2017) to the INSDC.
RL University Hospital Duesseldorf, Institute for Transplantation Diagnostics
RL and Cell Therapeutics, Medical Faculty, Moorenstr. 5, Duesseldorf, NRW
RL 40225, Germany
XX
DR MD5; f2d540e6122ca959dc14db340d50a65b.
DR Ensembl-Gn; ENSG00000206505; homo_sapiens.
DR Ensembl-Tr; ENST00000383605; homo_sapiens.
DR Ensembl-Tr; ENST00000549224; homo_sapiens.
DR IMGT/HLA; HLA-A*26:01:01:08; HLA16669.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: NGSengine v. 2.4.0
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..3136
FT /organism="Homo sapiens"
FT /chromosome="6"
FT /map="6p21.3"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <1..>3136
FT /gene="HLA"
FT /allele="HLA-A*26:01:01New3"
FT mRNA join(<1..209,340..609,852..1127,1728..2003,2103..2219,
FT 2658..2690,2833..2880,3050..>3136)
FT /gene="HLA"
FT /allele="HLA-A*26:01:01New3"
FT /product="MHC class I antigen"
FT exon <1..209
FT /gene="HLA"
FT /allele="HLA-A*26:01:01New3"
FT /number=1
FT 5'UTR <1..136
FT /gene="HLA"
FT /allele="HLA-A*26:01:01New3"
FT CDS join(137..209,340..609,852..1127,1728..2003,2103..2219,
FT 2658..2690,2833..2880,3050..3054)
FT /codon_start=1
FT /gene="HLA"
FT /allele="HLA-A*26:01:01New3"
FT /product="MHC class I antigen"
FT /db_xref="GOA:Q5SPM2"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:Q5SPM2"
FT /protein_id="ASU50341.1"
FT /translation="MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRANLGT
FT LRGYYNQSEDGSHTIQRMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMA
FT AQITQRKWETAHEAEQWRAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHE
FT ATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRY
FT TCHVQHEGLPKPLTLRWEPSSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRK
FT GGSYSQAASSDSAQGSDMSLTACKV"
FT exon 340..609
FT /gene="HLA"
FT /allele="HLA-A*26:01:01New3"
FT /number=2
FT exon 852..1127
FT /gene="HLA"
FT /allele="HLA-A*26:01:01New3"
FT /number=3
FT exon 1728..2003
FT /gene="HLA"
FT /allele="HLA-A*26:01:01New3"
FT /number=4
FT exon 2103..2219
FT /gene="HLA"
FT /allele="HLA-A*26:01:01New3"
FT /number=5
FT exon 2658..2690
FT /gene="HLA"
FT /allele="HLA-A*26:01:01New3"
FT /number=6
FT exon 2833..2880
FT /gene="HLA"
FT /allele="HLA-A*26:01:01New3"
FT /number=7
FT exon 3050..>3136
FT /gene="HLA"
FT /allele="HLA-A*26:01:01New3"
FT /number=8
FT 3'UTR 3055..>3136
FT /gene="HLA"
FT /allele="HLA-A*26:01:01New3"
XX
SQ Sequence 3136 BP; 601 A; 902 C; 974 G; 659 T; 0 other;
gatactcacg acgcggaccc agttctcact cccattgggt gtcgggtttc cagagaagcc 60
aatcagtgtc gtcgcggtcg cggttctaaa gtccgcacgc acccaccggg actcagattc 120
tccccagacg ccgaggatgg ccgtcatggc gccccgaacc ctcgtcctgc tactctcggg 180
ggccctggcc ctgacccaga cctgggcggg tgagtgcggg gtcgggaggg aaacggcctc 240
tgtggggaga agcaaggggc ccgcccggcg ggggcgcagg acccgggaag ccgcgcctgg 300
aggagggtcg ggcgggtctc agccactcct cgcccccagg ctcccactcc atgaggtatt 360
tctacacctc cgtgtcccgg cccggccgcg gggagccccg cttcatcgcc gtgggctacg 420
tggacgacac gcagttcgtg cggttcgaca gcgacgccgc gagccagagg atggagccgc 480
gggcgccgtg gatagagcag gaggggccgg agtattggga ccggaacaca cggaatgtga 540
aggcccactc acagactgac cgagcgaacc tggggaccct gcgcggctac tacaaccaga 600
gcgaggacgg tgagtgaccc cggcccgggg cgcaggtcac gacccctcat cccccacgga 660
cgggccaggt cgcccacagt ctccgggtcc gagatccgcc ccgaagccgc gggaccccga 720
gacccttgcc ccgggagagg cccaggcgcc tttacccggt ttcattttca gtttaggcca 780
aaaaatcccc ccgggttggt cggggcgggg cggggctcgg gggaccgggc tgacctcggg 840
gtccgggcca ggttctcaca ccatccagag gatgtatggc tgcgacgtgg ggccggacgg 900
gcgcttcctc cgcgggtacc agcaggacgc ttacgacggc aaggattaca tcgccctgaa 960
cgaggacctg cgctcttgga ccgcggcgga catggcggct cagatcaccc agcgcaagtg 1020
ggagacggcc catgaggcgg agcagtggag agcctacctg gagggccggt gcgtggagtg 1080
gctccgcaga tacctggaga acgggaagga gacgctgcag cgcacgggta ccaggggcca 1140
cggggcgcct ccctgatcgc ctgtagatct cccgggctgg cctcccacaa ggaggggaga 1200
caattgggac caacactaga atatcgccct ccctctggtc ctgagggaga ggaatcctcc 1260
tgggtttcca gatcctgtac cagagagtga ctctgaggtt ccgccctgct ctctgacaca 1320
attaagggat aaaatctctg aaggaatgac gggaagacga tccctcgaat actgatgagt 1380
ggttcccttt gacacacacc ggcagcagcc ttgggcccgt gacttttcct ctcaggcctt 1440
gttctctgct tcacactcaa tgtgtgtggg ggtctgagtc cagcacttct gagtccctca 1500
gcctccactc aggtcaggac cagaagtcgc tgttccctct tcagggacta gaattttcca 1560
cggaatagga gattatccca ggtgcctgtg tccaggctgg tgtctgggtt ctgtgctccc 1620
ttccccatcc caggtgtcct gtccattctc aagatagcca catgtgtgct ggaggagtgt 1680
cccatgacag atgcaaaatg cctgaatgtt ctgactcttc ctgacagacg cccccaagac 1740
gcatatgact caccacgctg tctctgacca tgaggccacc ctgaggtgct gggccctgag 1800
cttctaccct gcggagatca cactgacctg gcagcgggat ggggaggacc agacccagga 1860
cacggagctc gtggagacca ggcctgcagg ggatgggacc ttccagaagt gggcgtctgt 1920
ggtggtgcct tctggacagg agcagagata cacctgccat gtgcagcatg agggtctgcc 1980
caagcccctc accctgagat ggggtaagga gggagacggg ggtgtcatgt cttttaggga 2040
aagcaggagc ctctctgacc tttagcaggg tcagggcccc tcaccttccc ctcttttccc 2100
agagccgtct tcccagccca ccatccccat cgtgggcatc attgctggcc tggttctctt 2160
tggagctgtg atcgctggag ctgtggtcgc tgctgtgatg tggaggagga agagctcagg 2220
tggggaaggg atgaagggtg ggtctgagat ttcttgtctc actgagggtt ccaagaccca 2280
ggtagaagtg tgccctgcct cgttactggg aagcaccatc cacaattatg agcctaccca 2340
gcctgggccc tgtgtgccag cacttactct tttgtaaagc acctgttaaa atgaaggaca 2400
gatttatcac cttgattacg gcggtgatgg gacctgatcc cagcagtcac aagtcacagg 2460
ggaaggtccc tgaggacctt caggagggcg gttggtccag gacccacacc tgctttcttc 2520
atgtttcctg atcccgccct gggtctgcag tcacacattt ctggaaactt ctctgaggtc 2580
caagacttgg aggttcctct aggaccttaa ggccctggct cctttctggt atctcacagg 2640
acattttctt cccacagata gaaaaggagg gagctactct caggctgcaa gtaagtatga 2700
aggaggctga tgcctgaggt ccttgggata ttgtgtttgg gagcccgtgg gggagctcac 2760
ccaccccaca attcctcctc tagccacatg ttctgtggga tctgaccagg ttctgttttt 2820
gtcctacccc aggcagtgac agtgcccagg gctctgatat gtctctcaca gcttgtaaag 2880
gtgagagcct ggagggcctg atgtgtgttg ggtgttgggc ggaacagtgg acgcagctgt 2940
gctatggggt ttctttgcat tggatgtatt gagcatgcga tgggctgttt aaagtgtgac 3000
tcctcactgt gacagatacg aatttgttca tgaatatttt tttctatagt gtgagacagc 3060
tgccttgtgt gggactgaga ggcaagattt gttcctgccc ttccctttgt gacttgaaga 3120
accctgactt tgtttc 3136
//