Dbfetch
ID KY419391; SV 1; linear; genomic DNA; STD; HUM; 3023 BP. XX AC KY419391; XX DT 26-AUG-2017 (Rel. 133, Created) DT 26-AUG-2017 (Rel. 133, Last updated, Version 1) XX DE Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*04:01:01New4 allele, DE complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3023 RA Balz V., Krause S., Enczmann J., Fischer J.; RT "More than 130 novel variants of HLA class 1 genes detected in German Stem RT Cell Donor Registry and Terasaki samples"; RL Unpublished. XX RN [2] RP 1-3023 RA Balz V., Krause S., Enczmann J., Fischer J.; RT ; RL Submitted (02-JAN-2017) to the INSDC. RL University Hospital Duesseldorf, Institute for Transplantation Diagnostics RL and Cell Therapeutics, Medical Faculty, Moorenstr. 5, Duesseldorf, NRW RL 40225, Germany XX DR MD5; 40a4a6a0de849a95cc5c923590001487. DR IMGT/HLA; HLA-C*04:01:01:10; HLA16713. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.4.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3023 FT /organism="Homo sapiens" FT /chromosome="6" FT /map="6p21.3" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>3023 FT /gene="HLA-C" FT /allele="HLA-C*04:01:01New4" FT mRNA join(<1..161,292..561,808..1083,1671..1946,2068..2187, FT 2627..2659,2766..2813,2978..>3023) FT /gene="HLA-C" FT /allele="HLA-C*04:01:01New4" FT /product="MHC class I antigen" FT exon <1..161 FT /gene="HLA-C" FT /allele="HLA-C*04:01:01New4" FT /number=1 FT 5'UTR <1..88 FT /gene="HLA-C" FT /allele="HLA-C*04:01:01New4" FT CDS join(89..161,292..561,808..1083,1671..1946,2068..2187, FT 2627..2659,2766..2813,2978..2982) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*04:01:01New4" FT /product="MHC class I antigen" FT /db_xref="GOA:Q5D1W8" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:Q5D1W8" FT /protein_id="ASU50282.1" FT /translation="MRVMAPRTLILLLSGALALTETWAGSHSMRYFSTSVSWPGRGEPR FT FIAVGYVDDTQFVRFDSDAASPRGEPREPWVEQEGPEYWDRETQKYKRQAQADRVNLRK FT LRGYYNQSEDGSHTLQRMFGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWKPSSQPTIPIVGIVAGLAVLAVLAVLGAMVAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT exon 292..561 FT /gene="HLA-C" FT /allele="HLA-C*04:01:01New4" FT /number=2 FT exon 808..1083 FT /gene="HLA-C" FT /allele="HLA-C*04:01:01New4" FT /number=3 FT exon 1671..1946 FT /gene="HLA-C" FT /allele="HLA-C*04:01:01New4" FT /number=4 FT exon 2068..2187 FT /gene="HLA-C" FT /allele="HLA-C*04:01:01New4" FT /number=5 FT exon 2627..2659 FT /gene="HLA-C" FT /allele="HLA-C*04:01:01New4" FT /number=6 FT exon 2766..2813 FT /gene="HLA-C" FT /allele="HLA-C*04:01:01New4" FT /number=7 FT exon 2978..>3023 FT /gene="HLA-C" FT /allele="HLA-C*04:01:01New4" FT /number=8 FT 3'UTR 2983..>3023 FT /gene="HLA-C" FT /allele="HLA-C*04:01:01New4" XX SQ Sequence 3023 BP; 575 A; 869 C; 959 G; 620 T; 0 other; ttctagagaa gccaatcagc gtctccgcag tcccggttct aaagtcccca gtcacccacc 60 cggactcaga ttctccccag acgccgagat gcgggtcatg gcgccccgaa ccctcatcct 120 gctgctctcg ggagccctgg ccctgaccga gacctgggcc ggtgagtgcg gggttgggag 180 ggaaacggcc tctggggaga ggagcgaggg gcccgcccgg cgagggcgca ggacccgggg 240 agccgcgcag ggaggagggt cgggcgggtc tcagccactc ctcgtcccca ggctcccact 300 ccatgaggta tttctccaca tccgtgtcct ggcccggccg cggggagccc cgcttcatcg 360 cagtgggcta cgtggacgac acgcagttcg tgcggttcga cagcgacgcc gcgagtccaa 420 gaggggagcc gcgggagccg tgggtggagc aggaggggcc ggagtattgg gaccgggaga 480 cacagaagta caagcgccag gcacaggctg accgagtgaa cctgcggaaa ctgcgcggct 540 actacaacca gagcgaggac ggtgagtgac cccggcccgg ggcgcaggtc acgacccctc 600 cccatccccc acggacggcc cgggtcgccc cgagtctccc cgtctgagat ccaccccgag 660 gctgcggaac ccgcccagac cctcgaccgg agagagcccc agtcaccttt acccggtttc 720 attttcagtt taggccaaaa tccccgcggg ttggtcggga ctggggcggg gctcggggga 780 ccgggctgac cacgggggcg gggccagggt ctcacaccct ccagaggatg tttggctgcg 840 acctggggcc ggacgggcgc ctcctccgcg ggtataacca gttcgcctac gacggcaagg 900 attacatcgc cctgaacgag gatctgcgct cctggaccgc cgcggacacg gcggctcaga 960 tcacccagcg caagtgggag gcggcccgtg aggcggagca gcggagagcc tacctggagg 1020 gcacgtgcgt ggagtggctc cgcagatacc tggagaacgg gaaggagacg ctgcagcgcg 1080 cgggtaccag gggcagtggg gagccttccc catctcccgt agatctcccg ggatggcctc 1140 ccacgaggag gggaggaaaa tgggatcagc gctagaatat cgccctccct tgaatggaga 1200 atgggatgag ttttcctgag tttcctctga gggccccctc tgctctctag gacaattaag 1260 ggatgaagtc cttgaggaaa tggaggggaa gacagtccct ggaatactga tcaggggtcc 1320 cctttgacca ctttgaccac tgcagcagct gtggtcaggc tgctgacctt tctctcaggc 1380 cttgttctct gcctgacgct caatgtgttt gaaggtttga ttccagcttt tctgagtcct 1440 tcggcctcca ctcaggtcag gaccagaagt cgctgttcct ccctcagaga ctagaacttt 1500 ccaatgaata ggagattatc ccaggtgcct gtgtccaggc tggcgtctgg gttctgtgcc 1560 cccttcccca ccccaggtgt cctgtccatt ctcaggatgg tcacatgggc gctgttggag 1620 tgtcgcaaga gagatacaaa gtgtctgaat tttctgactc ttcccatcag aacacccaaa 1680 gacacacgtg acccaccatc ccgtctctga ccatgaggcc accctgaggt gctgggccct 1740 gggcttctac cctgcggaga tcacactgac ctggcagtgg gatggggagg accaaactca 1800 ggacaccgag cttgtggaga ccaggccagc aggagatgga accttccaga agtgggcagc 1860 tgtggtggtg ccttctggag aagagcagag atacacgtgc catgttcagc acgaggggct 1920 gccggagccc ctcaccctga gatggagtaa ggagggggat gaggggtgat gtgtcttctc 1980 agggaaagca gaagtcctgg agcccttcag ccgggtcagg gctgaggctt ggaggtcagg 2040 gcccctcacc ttcccctcct ttcccagagc cgtcttccca gcccaccatc cccatcgtgg 2100 gcatcgttgc tggcctggct gtcctggctg tcctagctgt cctaggagct atggtggctg 2160 ttgtgatgtg taggaggaag agctcaggta gggaaggggt gaggagtggg gtctgggttt 2220 tcttgttcca ctgggagttt caagccccag gtagaagtgt gccccacctc gttactggaa 2280 gcaccatcca cacatgggcc atcccagcct gggaccctgt gtgccagcac ttactctgtt 2340 gtgaagcaca tgacaatgaa ggacagatgt atcaccttga tgattatggt gttggggtcc 2400 ttgattccag cattcatgag tcaggggaag gtccctgcta aggacagacc ttaggagggc 2460 agttgcttca gaacccacag ctgctttccc cgtgtttcct gatcctgccc tgggtctgca 2520 gtcatagttc tggaaacttc tcttgggtcc aagactagga ggttccccta agatcgcatg 2580 gccctgcctc ctccctgtcc cctcacaggg cattttcttc ccacaggtgg aaaaggaggg 2640 agctgctctc aggctgcgtg taagtgatgg cggtgggcgt gtggaggagc tcacccaccc 2700 cataattcct cttgtcccac atctcctgcg ggctctgacc aggtcttttt tttgttctac 2760 cccagccagc aacagtgccc agggctctga tgagtctctc atcgcttgta aaggtgagat 2820 tctggggagc tgaagtggtc gggggtgggg cagagggaaa aggcctaggt aatggggatc 2880 ctttgattgg gacgtttcga atgtgtggtg agctgttcag agtgtcatca cttaccatga 2940 ctgacctgaa tttgttcatg actattgtgt tctgtagcct gagacagctg cctgtgtggg 3000 actgagatgc aggatttctt cac 3023 //