Dbfetch
ID KY419375; SV 1; linear; genomic DNA; STD; HUM; 3022 BP. XX AC KY419375; XX DT 26-AUG-2017 (Rel. 133, Created) DT 26-AUG-2017 (Rel. 133, Last updated, Version 1) XX DE Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*02:02:02New4 allele, DE complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3022 RA Balz V., Krause S., Enczmann J., Fischer J.; RT "More than 130 novel variants of HLA class 1 genes detected in German Stem RT Cell Donor Registry and Terasaki samples"; RL Unpublished. XX RN [2] RP 1-3022 RA Balz V., Krause S., Enczmann J., Fischer J.; RT ; RL Submitted (02-JAN-2017) to the INSDC. RL University Hospital Duesseldorf, Institute for Transplantation Diagnostics RL and Cell Therapeutics, Medical Faculty, Moorenstr. 5, Duesseldorf, NRW RL 40225, Germany XX DR MD5; 5ea25bcb509ff57e8f9c9c25a371729c. DR IMGT/HLA; HLA-C*02:02:02:08; HLA16700. XX CC ##Assembly-Data-START## CC Assembly Method :: NGSengine v. 2.4.0 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3022 FT /organism="Homo sapiens" FT /chromosome="6" FT /map="6p21.3" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>3022 FT /gene="HLA-C" FT /allele="HLA-C*02:02:02New4" FT mRNA join(<1..161,292..561,807..1082,1670..1945,2067..2186, FT 2626..2658,2766..2813,2977..>3022) FT /gene="HLA-C" FT /allele="HLA-C*02:02:02New4" FT /product="MHC class I antigen" FT exon <1..161 FT /gene="HLA-C" FT /allele="HLA-C*02:02:02New4" FT /number=1 FT 5'UTR <1..88 FT /gene="HLA-C" FT /allele="HLA-C*02:02:02New4" FT CDS join(89..161,292..561,807..1082,1670..1945,2067..2186, FT 2626..2658,2766..2813,2977..2981) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*02:02:02New4" FT /product="MHC class I antigen" FT /db_xref="GOA:Q7YQB1" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:Q7YQB1" FT /protein_id="ASU50266.1" FT /translation="MRVMAPRTLLLLLSGALALTETWACSHSMRYFYTAVSRPSRGEPH FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVNLRK FT LRGYYNQSEAGSHTLQRMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA FT AQITQRKWEAAREAEQWRAYLEGECVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPTEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT exon 292..561 FT /gene="HLA-C" FT /allele="HLA-C*02:02:02New4" FT /number=2 FT exon 807..1082 FT /gene="HLA-C" FT /allele="HLA-C*02:02:02New4" FT /number=3 FT exon 1670..1945 FT /gene="HLA-C" FT /allele="HLA-C*02:02:02New4" FT /number=4 FT exon 2067..2186 FT /gene="HLA-C" FT /allele="HLA-C*02:02:02New4" FT /number=5 FT exon 2626..2658 FT /gene="HLA-C" FT /allele="HLA-C*02:02:02New4" FT /number=6 FT exon 2766..2813 FT /gene="HLA-C" FT /allele="HLA-C*02:02:02New4" FT /number=7 FT exon 2977..>3022 FT /gene="HLA-C" FT /allele="HLA-C*02:02:02New4" FT /number=8 FT 3'UTR 2982..>3022 FT /gene="HLA-C" FT /allele="HLA-C*02:02:02New4" XX SQ Sequence 3022 BP; 575 A; 879 C; 954 G; 614 T; 0 other; ttctagagaa gccaatcagc gtctccgcag tcccggttct aaagtcccca gtcacccacc 60 cggactcgga ttctccccag acgccgagat gcgggtcatg gcgccccgaa ccctcctcct 120 gctgctctcg ggagccctgg ccctgaccga gacctgggcc tgtgagtgcg gggttgggag 180 ggaaacggcc tctgcggaga ggagcgaggg gcccgcccgg cgagggcgca ggacccgggg 240 agccgcgcag ggaggagggt cgggcgggtc tcagcccctc ctctccccca ggctcccact 300 ccatgaggta tttctacacc gctgtgtccc ggcccagccg cggagagccc cacttcatcg 360 cagtgggcta cgtggacgac acgcagttcg tgcggttcga cagcgacgcc gcgagtccaa 420 gaggggagcc gcgggcgccg tgggtggagc aggaggggcc ggagtattgg gaccgggaga 480 cacagaagta caagcgccag gcacagactg accgagtgaa cctgcggaaa ctgcgcggct 540 actacaacca gagcgaggcc ggtgagtgac cccggcccgg ggcgcaggtc acgacccctc 600 cccatccccc acggacggcc cgggtcgccc cgagtctccg ggtctgagat ccaccccgag 660 gctgcggaac ccgcccagac cctcgaccgg agagagcccc agtcaccttt acccggcttc 720 attttcagtt taggccaaaa tccccgcggg ttggtcgggg ctggggcggg gctcggggga 780 cgggctgacc acgggggcgg ggccagggtc tcacaccctc cagaggatgt acggctgcga 840 cctggggccc gacgggcgcc tcctccgcgg gtatgaccag tccgcctacg acggcaagga 900 ttacatcgcc ctgaacgagg acctgcgctc ctggaccgcc gcggacacag cggctcagat 960 cacccagcgc aagtgggagg cggcccgtga ggcggagcag tggagagcct acctggaggg 1020 cgagtgcgtg gagtggctcc gcagatacct ggagaacggg aaggagacgc tgcagcgcgc 1080 gggtaccagg ggcagtgggg agccttcccc atctcctgta gatctcccgg gatggcctcc 1140 cacgaggagg ggaggaaaat gggatcagcg ctagaatatc gccctccctt gaatggagaa 1200 tgggatgagt tttcctgagt ttcctctgag ggccccctct gctctctagg acaattaagg 1260 gatgaagtcc ttgaggaaat ggaggggaag acagtccctg gaatactgat caggggtccc 1320 ctttgaccac tttgaccact gcagcagctg tggtcaggct gctgaccttt ctctcaggcc 1380 ttgttctctg cctcacgctc aatgtgtttg aaggtttgat tccagctttt ctgagtcctt 1440 cggcctccac tcaggtcagg accagaagtc gctgttcctc cctcagagac tagaactttc 1500 caatgaatag gagattatcc caggtgcctg tgtccaggct ggcgtctggg ttctgtgccc 1560 ccttccccac cccaggtgtc ctgtccattc tcaggatagt cacatgggcg ctgttggagt 1620 gtcgcaagag agatacaaag tgtctgaatt ttctgactct tcccgtcaga acacccaaag 1680 acacacgtga cccaccatcc cgtctctgac catgaggcca ccctgaggtg ctgggccctg 1740 ggcttctacc ctacggagat cacactgacc tggcagcggg atggcgagga ccaaactcag 1800 gacaccgagc ttgtggagac caggccagca ggagatggaa ccttccagaa gtgggcagct 1860 gtggtggtgc cttctggaga agagcagaga tacacgtgcc atgtgcagca cgaggggctg 1920 ccggagcccc tcaccctgag atggggtaag gagggggatg aggggtcatg tgtcttctca 1980 gggaaagcag aagtcctgga gcccttcagc tgggtcaggg ctgaggcttg ggggtcaggg 2040 cccctcacct tcccctcctt tcccagagcc atcttcccag cccaccatcc ccatcgtggg 2100 catcgttgct ggcctggctg tcctggctgt cctagctgtc ctaggagctg tggtggctgt 2160 tgtgatgtgt aggaggaaga gctcaggtag ggaaggggtg aggagtgggg tctgggtttt 2220 cttgtcccac tgggagtttc aagccccagg tagaagtgtg ccccacctcg ttactggaag 2280 caccatccac acatgggcca tcccagcctg ggaccctgtg tgccagcact tactctgttg 2340 tgaagcacat gacaatgaag gacagatgta tcaccttgat gattatggtg ttggggtcct 2400 tgattccagc attcatgagt caggggaagg tccctgctaa ggacagacct taggagggca 2460 gttgctccag aacccacagc tgctttcccc gtgtttcctg atcctgccct gggtctgcag 2520 tcatagttct ggaaacttct cttgggtcca agactaggag gttcccctaa gattgcatgg 2580 ccctgcctcc tccctgtccc ctcacagggc attttcttcc cacaggtgga aaaggaggga 2640 gctgctctca ggctgcgtgt aagtgatggc ggcaggcgtg tggaggagct cacccacccc 2700 ataattcctc ttgtcccaca tctcctgcgg gctctgacca ggtctttttt tttgttctac 2760 cccagccagc aacagtgccc agggctctga tgagtctctc atcgcttgta aaggtgagat 2820 tctgggagct gaagtggtcg ggggtggggc agagggaaaa ggcctaggta atggggatcc 2880 tttgataggg acgtttcgaa tgtgtggtga gctgttcaga gtgtcatcac ttaccatgac 2940 tgacctgaat ttgttcatga ctattgtgtt ctgtagcctg agacagctgc ctgtgtggga 3000 ctgagatgca ggatttcttc ac 3022 //