Dbfetch
ID KY235390; SV 1; linear; genomic DNA; STD; HUM; 3321 BP.
XX
AC KY235390;
XX
DT 23-JUN-2017 (Rel. 133, Created)
DT 24-FEB-2018 (Rel. 135, Last updated, Version 2)
XX
DE Homo sapiens isolate BY01345 MHC class I antigen (HLA-A) gene,
DE HLA-A*01:01:01:01v allele, complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RC DOI: 10.1111/tan.13210
RP 1-3321
RX DOI; .1111/tan.13210.
RX PUBMED; 29327506.
RA Hurley C.K., Hou L., Lazaro A., Gerfen J., Enriquez E., Galarza P.,
RA Rodriguez Cardozo M.B., Halagan M., Maiers M., Behm D., Ng J.;
RT "Next generation sequencing characterizes the extent of HLA diversity in an
RT Argentinian registry population";
RL HLA. 91(3):175-186(2018).
XX
RN [2]
RP 1-3321
RA Lazaro A.M., Hou L., Hurley C.K.;
RT ;
RL Submitted (23-NOV-2016) to the INSDC.
RL Oncology, Georgetown University, 3970 Reservoir Rd, N.W., Washington, DC
RL 20057, USA
XX
DR MD5; a02a39354f2ed549d5babc0b9c6de0ef.
DR Ensembl-Gn; ENSG00000224320; homo_sapiens.
DR Ensembl-Gn; ENSG00000229215; homo_sapiens.
DR Ensembl-Tr; ENST00000431930; homo_sapiens.
DR Ensembl-Tr; ENST00000443552; homo_sapiens.
DR Ensembl-Tr; ENST00000549869; homo_sapiens.
DR Ensembl-Tr; ENST00000552193; homo_sapiens.
DR IMGT/HLA; HLA-A*01:01:01:05; HLA16415.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Assign TruSight v. HLA2.1.0.934; GenDex v.
CC V1.7.0.2937
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..3321
FT /organism="Homo sapiens"
FT /isolate="BY01345"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <119..>3021
FT /gene="HLA-A"
FT /allele="HLA-A*01:01:01:01v"
FT mRNA join(<119..191,322..591,833..1108,1688..1963,2066..2182,
FT 2625..2657,2800..2847,3017..>3021)
FT /gene="HLA-A"
FT /allele="HLA-A*01:01:01:01v"
FT /product="MHC class I antigen"
FT CDS join(119..191,322..591,833..1108,1688..1963,2066..2182,
FT 2625..2657,2800..2847,3017..3021)
FT /codon_start=1
FT /gene="HLA-A"
FT /allele="HLA-A*01:01:01:01v"
FT /product="MHC class I antigen"
FT /db_xref="GOA:Q5SUL5"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:Q5SUL5"
FT /protein_id="ASA47538.1"
FT /translation="MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGT
FT LRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMA
FT AQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRK
FT GGSYTQAASSDSAQGSDVSLTACKV"
XX
SQ Sequence 3321 BP; 634 A; 956 C; 1015 G; 716 T; 0 other;
ccagttctca ctcccattgg gtgtcgggtt tccagagaag ccaatcagtg tcgtcgcggt 60
cgctgttcta aagtccgcac gcacccaccg ggactcagat tctccccaga cgccgaggat 120
ggccgtcatg gcgccccgaa ccctcctcct gctactctcg ggggccctgg ccctgaccca 180
gacctgggcg ggtgagtgcg gggtcgggag ggaaaccgcc tctgcgggga gaagcaaggg 240
gccctcctgg cgggggcgca ggaccggggg agccgcgccg ggaggagggt cgggcaggtc 300
tcagccactg ctcgccccca ggctcccact ccatgaggta tttcttcaca tccgtgtccc 360
ggcccggccg cggggagccc cgcttcatcg ccgtgggcta cgtggacgac acgcagttcg 420
tgcggttcga cagcgacgcc gcgagccaga agatggagcc gcgggcgccg tggatagagc 480
aggaggggcc ggagtattgg gaccaggaga cacggaatat gaaggcccac tcacagactg 540
accgagcgaa cctggggacc ctgcgcggct actacaacca gagcgaggac ggtgagtgac 600
cccggcccgg ggcgcaggtc acgacccctc atcccccacg gacgggccag gtcgcccaca 660
gtctccgggt ccgagatccg ccccgaagcc gcgggacccc gagacccttg ccccgggaga 720
ggcccaggcg cctttacccg gtttcatttt cagtttaggc caaaaatccc cccgggttgg 780
tcggggcggg gcggggctcg ggggactggg ctgaccgcgg ggtcggggcc aggttctcac 840
accatccaga taatgtatgg ctgcgacgtg gggccggacg ggcgcttcct ccgcgggtac 900
cggcaggacg cctacgacgg caaggattac atcgccctga acgaggacct gcgctcttgg 960
accgcggcgg acatggcagc tcagatcacc aagcgcaagt gggaggcggt ccatgcggcg 1020
gagcagcgga gagtctacct ggagggccgg tgcgtggacg ggctccgcag atacctggag 1080
aacgggaagg agacgctgca gcgcacgggt accaggggcc acggggcgcc tccctgatcg 1140
cctatagatc tcccgggctg gcctcccaca aggaggggag acaattggga ccaacactag 1200
aatatcaccc tccctctggt cctgagggag aggaatcctc ctgggtttcc agatcctgta 1260
ccagagagtg actctgaggt tccgccctgc tctctgacac aattaaggga taaaatctct 1320
gaaggagtga cgggaagacg atccctcgaa tactgatgag tggttccctt tgacaccggc 1380
agcagccttg ggcccgtgac ttttcctctc aggccttgtt ctctgcttca cactcaatgt 1440
gtgtgggggt ctgagtccag cacttctgag tctctcagcc tccactcagg tcaggaccag 1500
aagtcgctgt tcccttctca gggaatagaa gattatccca ggtgcctgtg tccaggctgg 1560
tgtctgggtt ctgtgctctc ttccccatcc cgggtgtcct gtccattctc aagatggcca 1620
catgcgtgct ggtggagtgt cccatgacag atgcaaaatg cctgaatttt ctgactcttc 1680
ccgtcagacc cccccaagac acatatgacc caccacccca tctctgacca tgaggccacc 1740
ctgaggtgct gggccctggg cttctaccct gcggagatca cactgacctg gcagcgggat 1800
ggggaggacc agacccagga cacggagctc gtggagacca ggcctgcagg ggatggaacc 1860
ttccagaagt gggcggctgt ggtggtgcct tctggagagg agcagagata cacctgccat 1920
gtgcagcatg agggtctgcc caagcccctc accctgagat ggggtaagga gggagatggg 1980
ggtgtcatgt ctcttaggga aagcaggagc ctctctggag acctttagca gggtcagggc 2040
ccctcacctt cccctctttt cccagagctg tcttcccagc ccaccatccc catcgtgggc 2100
atcattgctg gcctggttct ccttggagct gtgatcactg gagctgtggt cgctgccgtg 2160
atgtggagga ggaagagctc aggtggagaa ggggtgaagg gtggggtctg agatttcttg 2220
tctcactgag ggttccaagc cccagctaga aatgtgccct gtctcattac tgggaagcac 2280
cttccacaat catgggccga cccagcctgg gccctgtgtg ccagcactta ctcttttgta 2340
aagcacctgt taaaatgaag gacagattta tcaccttgat tacggcggtg atgggacctg 2400
atcccagcag tcacaagtca caggggaagg tccctgagga cagacctcag gagggctatt 2460
ggtccaggac ccacacctgc tttcttcatg tttcctgatc ccgccctggg tctgcagtca 2520
cacatttctg gaaacttctc tggggtccaa gactaggagg ttcctctagg accttaaggc 2580
cctggctcct ttctggtatc tcacaggaca ttttcttccc acagatagaa aaggagggag 2640
ttacactcag gctgcaagta agtatgaagg aggctgatgc ctgaggtcct tgggatattg 2700
tgtttgggag cccatggggg agctcaccca ccccacaatt cctcctctag ccacatcttc 2760
tgtgggatct gaccaggttc tgtttttgtt ctaccccagg cagtgacagt gcccagggct 2820
ctgatgtgtc tctcacagct tgtaaaggtg agagcttgga gggcctgatg tgtgttgggt 2880
gttgggtgga acagtggaca cagctgtgct atggggtttc tttgcgttgg atgtattgag 2940
catgcgatgg gctgtttaag gtgtgacccc tcactgtgat ggatatgaat ttgttcatga 3000
atattttttt ctatagtgtg agacagctgc cttgtgtggg actgagaggc aagagttgtt 3060
cctgcccttc cctttgtgac ttgaagaacc ctgactttgt ttctgcaaag gcacctgcat 3120
gtgtctgtgt tcgtgtaggc ataatgtgag gaggtgggga gagcacccca cccccatgtc 3180
caccatgacc ctcttcccac gctgacctgt gctccctctc caatcatctt tcctgttcca 3240
gagaggtggg gctgaggtgt ctccatctct gtctcaactt catggtgcac tgagctgtaa 3300
cttcttcctt ccctattaaa a 3321
//