Dbfetch
ID KY172886; SV 1; linear; genomic DNA; STD; HUM; 6180 BP. XX AC KY172886; XX DT 26-DEC-2016 (Rel. 131, Created) DT 14-JAN-2017 (Rel. 131, Last updated, Version 2) XX DE Homo sapiens isolate 83-16 MHC class II antigen (HLA-DQA1) gene, DE HLA-DQA1*01:02:01:01 allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6180 RA Ameen R.M.; RT "Establishment of Stem Cell and Cord Blood Registry in Kuwait"; RL Unpublished. XX RN [2] RP 1-6180 RA Ameen R.M.; RT ; RL Submitted (14-NOV-2016) to the INSDC. RL Medical Laboratory Science, Allied Health Science, Health Sciences Centre, RL Kuwait University, 102, Jabriya, Hawally 13110, Kuwait XX DR MD5; e5c63c80926924662ee6258f73a8cb16. DR Ensembl-Gn; ENSG00000196735; homo_sapiens. DR Ensembl-Tr; ENST00000343139; homo_sapiens. DR Ensembl-Tr; ENST00000374949; homo_sapiens. DR Ensembl-Tr; ENST00000395363; homo_sapiens. DR IMGT/HLA; HLA-DQA1*01:02:01:01; HLA00602. XX CC ##Assembly-Data-START## CC Assembly Method :: HLA Twin RUO v. 1.1.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6180 FT /organism="Homo sapiens" FT /isolate="83-16" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <282..>5587 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:02:01:01" FT mRNA join(<282..363,4133..4381,4795..5076,5433..>5587) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:02:01:01" FT /product="MHC class II antigen" FT CDS join(282..363,4133..4381,4795..5076,5433..5587) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*01:02:01:01" FT /product="MHC class II antigen" FT /db_xref="GOA:A0A173ADG5" FT /db_xref="InterPro:IPR001003" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="PDB:3PL6" FT /db_xref="UniProtKB/TrEMBL:A0A173ADG5" FT /protein_id="APO40934.1" FT /translation="MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPS FT GQYTHEFDGDEQFYVDLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYN FT STAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSF FT LSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCA FT LGLSVGLMGIVVGTVFIIQGLRSVGASRHQGPL" XX SQ Sequence 6180 BP; 1768 A; 1325 C; 1341 G; 1746 T; 0 other; aagattccaa tttaatgtcc tccctttatt catagaacaa ttcctcaagt ccactctgag 60 tagaggctgc atcacaaggg gattgccccg tctccttcca gggctcttaa tacaaactct 120 tcaactagta actgagatgt caccataggg gatttttcta attggccaaa acctgacttg 180 gcagggtttg gtttgggtgt cttcagattt ccttgtcttg aggtcctcac aattactcta 240 cagctcagaa caccaactgc tgaggctgcc ttgggaagag gatgatccta aacaaagctc 300 tgctgctggg ggccctcgct ctgaccaccg tgatgagccc ctgtggaggt gaagacattg 360 tgggtgagtg catgagtgag ggatgttctc tggagctgaa aaacagtaaa ttgaaggaaa 420 agagataaag cgatttgcag agaaactgta gagatttcct aagggccctt tcagtattaa 480 gacaattaaa aattatagct gttcctcctt caggaaacca gagccccaac ctactctttt 540 tgttatctat gctgttgtgt tcactaagga cgctattctg tttatattat attcagtgac 600 tacggcctgg aggtctctat gtcgttccat catgattgcc tcaaaaatta gtgaggtttc 660 catcagtgga taatttttta ttattaaaaa tttatgaagt gtcattctca aatttccctg 720 aacaactttt gaagcttttc ggatgtctcc ggtggtagat cttggggtca ttccatcaat 780 tatgtactct atagatattt aaaatgttgc ccgtttcttt ctctcagact tactcacatt 840 tccacatggg aactggcaca ggtggggagt gggtaaagga gtccagcagg ctgaatgcct 900 tcaacaatca ttttaccaca tggtcctcac ttactctcag ctgcctcata tgtgtcacct 960 cacaagtaat caaataaaat gggcatgtgg ctaagctttg taaatagtga aaacatgaat 1020 gtcaattttt tttacatatt tctattacag atatagcttc acatttcttt tctttagcaa 1080 aataagggat cattttattt taaaattgag aagtagaaaa aattggtaaa ataaatcatt 1140 ttattctcaa attatcaacc caaattacct gttcttcacc tcatctaata aagtcctata 1200 aaaagaaaag tgggccagac aaggtggctc atgcctgtaa tcccagcact ttgggaggcc 1260 gaggcaggag gatcatttga gcctgggagc ttgagaccag cctgggcaac atagcaagac 1320 ctcatctcta caaaaaaaga aaaataaaaa ttagccaggc atggtggtgt gtgcctgtgg 1380 tgccagctac tcagaaggct gccgtgggag gaccacttga gtccatgagg cggaagctgc 1440 agtgagccat ggtggcacca ctacactcca gccagggcaa cagagagagg cgctgtctca 1500 aaaagaaaga ggaaagaaag cgaggaagga aggaaggaag gagaaggaag gaaggaagga 1560 aaagaaaaga aaagggaagg gaggaaggaa gggaaaaaga aagacagaaa gaaagaggaa 1620 ggaaggaaga aaggaagcac agattaatta tttggtctct tactctcctc tgcctttgtc 1680 gtccatctct ttccacctct cttcatgcat ccctttctcc ctcttccctt tcaggatcca 1740 tctctgactc cctgctcctt tatagagatg gacagtgggt ttgtaaaaca aaagttgaaa 1800 agtcagatag ttaaaagggg aagtgaactg gaaggtactt taaactttca caactttatt 1860 aaccgtggct gctcccatta tgattttgtt cggcagtgga agtttcacct gcttctccag 1920 agcgcttggc gtctttgttc caaatttcct ttcttcaacc tcacaccaga gtgccctggt 1980 caggcttggc tcattcatta ggcacaatgt gggcagtgca ggggaccctc catactgtaa 2040 agccacatga gaaggtttta actcctttta aaattagaaa aataatggaa tattagagcc 2100 taagaaaatg ttttaacttt taattcagcc tagattatat tgtctttata ccaattcagt 2160 cataaaatat aattttccat atttttgtgg aggaagaggc ccatacaagc aagaatgctc 2220 ggggctcaca tgtcagaatg cagccttggt catgactgat cctggccttc gtatggttct 2280 gctacctgtg tgcctgcccg tcttccccaa aatctatgtg gtcctcgaat atagcaactg 2340 tcattcaata cacatgtttg agcacacagt gagctaagtt ttaaggattc aaagatgaaa 2400 agtcatgctg tcttccctgc agagggtgct cagattagtg atggaaacag tatggggtgc 2460 aggaaagcag aaggccattg ctgagcaggg cagtggaccc agcagaggct gaaacaatac 2520 aagtgacttg gttccaggtg ggccagcagg gtgacgtcct ctagcaaaat ttggcaccca 2580 agacaagtac cagaagaaaa gaaagactgc atgtattcca catatattca tgtttgaaca 2640 aggagtcaag atttatggca aggataagga ggctttgttg gtgacctgtt aagaccaacc 2700 agggcagtca tgctggatag ggaagaaggt gagctggaag aggaacagac aacttggaca 2760 gccagatgtt gagacggagg ggttggaggt cataatgtgg tcaaaaacat gttgatgaga 2820 ggactcagct acaaagttgt taacttaagc agaaacctca aggatggatt ttagaatttc 2880 tccaggaagt cctaaaagat aattccattt cagggagaaa aacaacagac cactgcaaag 2940 accagggaac atgaaaggat aatgtagttt gtcttgcttg gcagatactt ttgaaggatg 3000 ttggactgta aggctgtcga tatcctcctc agagaactta ctacagtaca ttgtatctgt 3060 tcccttacct acctgactct tccactattc agtttgttcc ttaatagtag accatgcctg 3120 attggtgttt tacacatctc cggctatgtc tgacacttgt ggatgctcag aaagtgggga 3180 aggaaggaaa gatacgatgg taaaaggctt acacatgtct tgacaaaaaa gtccagtttg 3240 gctcatttgg ctggagtcgt actgcatggc tgccattctg ctctggcatc ctcagacaag 3300 cacactgccc attagaggaa aaagtgtgat ataagtgttg agtcagaatg ctgtagacat 3360 ttagtaatct ccttcacagg aaaaaaaaaa aaaaggtggg gggaatgaca gaaatccaaa 3420 aactagtaga gcttccactt ttcatttcag aagaaatcag ttgctctcct ctaaggacca 3480 ttactattaa caaaacagag accttagaag gaggcattgt ttatttatta tatattttgt 3540 aatgttatta ccaatcttgt tatactcttt cttataccct acaattgtta gcagaaatta 3600 ttttaaatta ataagatcct gcatgctttt cctttaaaaa aaaaaaaaag aaagatctct 3660 gtgtagagtg tcctattctg agccagtcct gagaggaaag gaagtataat caatttgtta 3720 ttaaccaatg aaagaattaa gtgaaagata aatctcagga agcagaggga agtaaaccta 3780 atttctgact aagaaagcta aatactatga taactcattc attccttctt ttgttcaatt 3840 acattattta atcataagtc catgacatgc caggcactca ggaaatagta aaaattggac 3900 atgcgatatt ctgcccttgt gtagcgcaca ctagagtggg aaagaaagtg cacttttaac 3960 tggacaacta ccaacatgaa gaggggagga agcaggggct ggaaatgtcc acagactgtg 4020 ccaaaaaatg aagcccataa tatttgaaag tcagtttctt ccatcatttt gtgtattaag 4080 gttctttctt cccctgttct ccgccttcct gcttgtcatc ttcactcatc agctgaccac 4140 gttgcctctt gtggtgtaaa cttgtaccag ttttacggtc cctctggcca gtacacccat 4200 gaatttgatg gagatgagca gttctacgtg gacctggaga ggaaggagac tgcctggcgg 4260 tggcctgagt tcagcaaatt tggaggtttt gacccgcagg gtgcactgag aaacatggct 4320 gtggcaaaac acaacttgaa catcatgatt aaacgctaca actctaccgc tgctaccaat 4380 ggtatgcgtc caccattctg cctctcttta cttaagttat ccctccatac cagggttcat 4440 tattttcttc ccaagaggtc cccagatctt cttatggcaa ttgctgaaat tttatcatct 4500 cccatctcta aaatcacata ttcccatgta atacaagggt ctttccatta tgcattcagc 4560 aaatccttct aggagaggtc tcatcaacct cctactttat taaacatgcc cacagagaga 4620 agggcacagg aataaagcag aggcaatgtg tcgttgctcc caagcagaag gtaaataaga 4680 cctctttgac tatcaggtgg tgaaatgctg gtaggagggc tcttccagga tgtaatgcag 4740 aacttcaggg cagagctatt cacacttcac accagtgctg tttcctcacc acagaggttc 4800 ctgaggtcac agtgttttcc aagtctcccg tgacactggg tcagcccaac accctcattt 4860 gtcttgtgga caacatcttt cctcctgtgg tcaacatcac atggctgagc aatgggcagt 4920 cagtcacaga aggtgtttct gagaccagct tcctctccaa gagtgatcat tccttcttca 4980 agatcagtta cctcaccttc ctcccttctg ctgatgagat ttatgactgc aaggtggagc 5040 actggggcct ggaccagcct cttctgaaac actggggtaa ggatgagttt catcattttt 5100 tgattctttc ttgtctgtca agttcagaac ttcctgcctt ttactcctat atccaaaaac 5160 ttgttttcca cacttcatgg gtttcttttc tgtctctctt ttttttttga aagaataaag 5220 caaaaaaagc agagatttat tgaaaatgaa agtacactct acaggatggg agtgggcctg 5280 ccacttcatg gttttctaat gatagacttc actcttctcc ctaagcctgg ggccttgagt 5340 ctttgcagag ccaaccctct accccatccc atcccacaca catgcacatg agcacactct 5400 gcattctgac ctcaacaact tcacttccac agagcctgag attccagccc ctatgtcaga 5460 gctcacagag actgtggtct gtgccctggg gttgtctgtg ggcctcatgg gcattgtggt 5520 gggcactgtc ttcatcatcc aaggcctgcg ttcagttggt gcttccagac accaagggcc 5580 attgtgaatc ccatcctgga agggaaggta agattgagac tggttacagt tgaagcggca 5640 gtatgaaagg aaggaaagtg ggagggcgtt gtggacatga atgtggttga aagttgtagg 5700 ggaattggga agtggcatga tgatgacaca ggagccccct cggacccatt gatctcatgt 5760 ctgccctgtt gcaggtgcat cgccatctac aggagcagaa gaatggactt gctaaatgac 5820 ctagcactat tctctggccc gatttatcat atcccttttc tcctccaaat atttctcctc 5880 tcaccttttc tctgggactt aagctgctat atcccctcag agctcacaaa tgcctttaca 5940 ttctttccct gacctcctga tttttttttt cttttctcaa atgttaccta caaagacatg 6000 cctggggtaa gccacccggc tacctaattc ctcagtaacc tccatctaaa atctccaagg 6060 aagcaataaa ttccttttat gagatctatg tcaaattttt ccatctttca tccagggctg 6120 actgaaacta tggctaataa ttggggtact cttatgtttc aatccaattt aacctcattt 6180 //