Dbfetch
ID KY059998; SV 1; linear; genomic DNA; STD; HUM; 3220 BP. XX AC KY059998; XX DT 20-FEB-2017 (Rel. 131, Created) DT 20-FEB-2017 (Rel. 131, Last updated, Version 1) XX DE Homo sapiens isolate 7095125 MHC class I antigen (HLA-B) gene, HLA-B*18:new DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3220 RX DOI; 10.1111/tan.12948. RX PUBMED; 28032474. RA Brunet L., Bettens F., Villard J., Ferrari-Lacraz S., Buhler S.; RT "Identification of 3 novel HLA-B alleles: B*08:173, B*18:72:03 and RT B*53:05:02"; RL HLA. 89(2):114-115(2017). XX RN [2] RP 1-3220 RA Studer-Bettens F., Ferrari-Lacraz S., Brunet L., Villard J., Buhler S.; RT ; RL Submitted (28-OCT-2016) to the INSDC. RL Department of Genetic and Laboratory Medicine, Transplantation Immunology RL Unit/National Reference Laboratory for Histocompatibility, Geneva RL University Hospitals, Gabrielle-Perret-Gentil 4, Geneva 1211 Geneve 4, RL Switzerland XX DR MD5; 42246d33f4a277e16922c9a2353a31fc. DR IMGT/HLA; HLA-B*18:72:03; HLA16329. XX CC ##Assembly-Data-START## CC Assembly Method :: HLATypeStream v. 1.0.0.86 CC Sequencing Technology :: IonTorrent; Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3220 FT /organism="Homo sapiens" FT /isolate="7095125" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene 182..2867 FT /gene="HLA-B" FT /allele="HLA-B*18:new" FT mRNA join(<182..254,383..652,899..1174,1747..2022,2127..2243, FT 2685..2717,2824..>2867) FT /gene="HLA-B" FT /allele="HLA-B*18:new" FT /product="MHC class I antigen" FT CDS join(182..254,383..652,899..1174,1747..2022,2127..2243, FT 2685..2717,2824..2867) FT /codon_start=1 FT /gene="HLA-B" FT /allele="HLA-B*18:new" FT /product="MHC class I antigen" FT /db_xref="GOA:A0A140HLF2" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:A0A140HLF2" FT /protein_id="AQN68987.1" FT /translation="MRVTAPRTLLLLLWGAVALTETWAGSHSMRYFHTSVSRPGRGEPR FT FISVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRNTQISKTNTQTYRESLRN FT LRGYYNQSEAGSHTLQRMYGCDVGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTA FT AQITQRKWEAARVAEQLRAYLEGTCVEWLRRHLENGKETLQRADPPKTHVTHHPISDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGK FT GGSYSQAASSDSAQGSDVSLTA" XX SQ Sequence 3220 BP; 601 A; 945 C; 1005 G; 669 T; 0 other; acgagtttca cttcttctcc caacctatgt cgggtccttc ttccaggata ctcgtgacgc 60 gtccccattt cccactccca ttgggtgtcg ggtgtctaga gaagccaatc agtgtcgccg 120 gggtcccagt tctaaagtcc ccacgcaccc acccggactc agaatctcct cagacgccga 180 gatgcgggtc acggcgcccc gaaccctcct cctgctgctc tggggggcag tggccctgac 240 cgagacctgg gctggtgagt gcggggtcgg cagggaaatg gcctctgtgg ggaggagcga 300 ggggaccgca ggcgggggcg caggacccgg ggagccgcgc cgggaggagg gtcgggcggg 360 tctcagcccc tccttgcccc aggctcccac tccatgaggt atttccacac ctccgtgtcc 420 cggcccggcc gcggggagcc ccgcttcatc tcagtgggct acgtggacga cacgcagttc 480 gtgaggttcg acagcgacgc cgcgagtccg aggacggagc cccgggcgcc gtggatagag 540 caagaggggc cggagtattg ggaccggaac acacagatct ccaagaccaa cacacagact 600 taccgagaga gcctgcggaa cctgcgcggc tactacaacc agagcgaggc cggtgagtga 660 ccccggcccg gggcgcaggt cacgactccc catcccccac gtacggcccg ggtcgccccg 720 agtctccggg tccgagatcc gcccccctga ggccgcggga cccgcccaga ccctcgaccg 780 gcgagagccc caggcgcgtt tacccggttt cattttcagt tgaggccaaa atccccgcgg 840 gttggtcggg gcggggcggg gctcgggggg acggggctga ccgcggggcc ggggccaggg 900 tctcacaccc tccagaggat gtacggctgc gacgtggggc cggacgggcg cctcctccgc 960 gggcatgacc agtccgccta cgacggcaag gattacatcg ccctgaacga ggacctgagc 1020 tcctggaccg cggcggacac cgcggctcag atcacccagc gcaagtggga ggcggcccgt 1080 gtggcggagc agctgagagc ctacctggag ggcacgtgcg tggagtggct ccgcagacac 1140 ctggagaacg ggaaggagac gctgcagcgc gcgggtacca ggggcagtgg ggagccttcc 1200 ccatctccta taggtcgccg gggatggcct cccacgagaa gaggaggaaa atgggatcag 1260 cgctagaatg tcgccctccc ttgaatggag aatggcatga gttttcccga gtttcctctg 1320 agggccccct cttctctcta ggacaattaa gggatgacgt ctctgaggaa atggagggga 1380 agacagtccc tagaatactg atcaggggtc ccctttgacc cctgcagcag ccttgggaac 1440 catgactttt cctctcaggc cttgttctct gcctcacact cagtgtgttt ggggctctga 1500 ttccagcact tctgagtcac tttacctcca ctcagatcag gagcagaagt ctctgttccc 1560 cgctcagaga ctcgaacttt ccaatgaata gattatccca ggtgcctgcg tccaggctgg 1620 tgtctgggtt ctgtgcccct tccccacccc aggtgtcctg tccattctca ggctggtcac 1680 atgggtggtc ctagggtgtc ccatgagaga tgcaaagcgc ctgaattttc tgactcttcc 1740 catcagaccc cccaaagaca catgtgaccc accaccccat ctctgaccat gaggccaccc 1800 tgaggtgctg ggccctgggc ttctaccctg cggagatcac actgacctgg cagcgggatg 1860 gcgaggacca aactcaggac accgagcttg tggagaccag accagcagga gatagaacct 1920 tccagaagtg ggcagctgtg gtggtgcctt ctggagaaga gcagagatac acatgccatg 1980 tacagcatga ggggctgccg aagcccctca ccctgagatg gggtaaggag ggggatgagg 2040 ggtcatatct cttctcaggg aaagcaggag cccttctgga gcccttcagc agggtcaggg 2100 cccctcatct tcccctcctt tcccagagcc atcttcccag tccaccatcc ccatcgtggg 2160 cattgttgct ggcctggctg tcctagcagt tgtggtcatc ggagctgtgg tcgctactgt 2220 gatgtgtagg aggaagagct caggtaggga aggggtgagg ggtggggtct gggttttctt 2280 gtcccactgg gggtttcaag ccccaggtag aagtgttccc tgcctcatta ctgggaagca 2340 gcatccacac aggggctaac gcagcctggg accctgtgtg ccagcactta ctcttttgtg 2400 cagcacatgt gacaatgaag gacggatgta tcaccttgat ggttgtggtg ttggggtcct 2460 gattccagca ttcatgagtc aggggaaggt ccctgctaag gacagacctt aggagggcag 2520 ttggtccagg acccacactt gctttcctcg tgtttcctga tcctgccttg ggtctgtagt 2580 catacttctg gaaattcctt ttggttccaa gacgaggagg ttcctctaag atctcatggc 2640 cctgcttcct cccagtcccc tcacaggaca ttttcttccc acaggtggaa aaggagggag 2700 ctactctcag gctgcgtgta agtggtgggg gtgggagtgt ggaggagctc acccacccca 2760 taattcctcc tgtcccacgt ctcctgcggg ctctgaccag gtcctgtttt tgttctactc 2820 cagccagcga cagtgcccag ggctctgatg tgtctctcac agcttgaaaa ggtgagattc 2880 ttggggtcta gagtgggcgg gggggcgggg agggggcaga ggggaaaggc ctgggtaatg 2940 gagattcttt gattgggatg tttcgcgtgt gtggtgggct gttcagagtg tcatcactta 3000 ccatgactaa ccagaatttg ttcatgactg ttgttttctg tagcctgaga cagctgtctt 3060 gtgagggacc gagatgcagg atttcttcac gcctcccctt tgtgacttca agagcctctg 3120 gcatctcttt ctgcaaaggc acctgaatgt gtctgcgtcc ctgttagcat aatgtgagga 3180 ggtggagaga cagcccaccc ccgtgtccac cgtgacccct 3220 //