Dbfetch
ID KU319358; SV 1; linear; genomic DNA; STD; HUM; 5764 BP. XX AC KU319358; XX DT 27-MAY-2016 (Rel. 128, Created) DT 27-MAY-2016 (Rel. 128, Last updated, Version 1) XX DE Homo sapiens MHC class II antigen (HLA-DQA1) gene, HLA-DQA1*05_05_01_01v1 DE allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5764 RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.; RT "HLA variation in coding and non-coding gene segments"; RL Unpublished. XX RN [2] RP 1-5764 RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.; RT ; RL Submitted (18-DEC-2015) to the INSDC. RL Stanford Blood Center, Stanford School of Medicine, 3165 Porter Drive, Palo RL Alto, CA 94304, USA XX DR MD5; 0ca0322aead9d0b183d70ac1a8597510. DR IMGT/HLA; HLA-DQA1*05:05:01:04; HLA14801. XX CC ##Assembly-Data-START## CC Assembly Method :: Program in house v. k1.1 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5764 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <178..>5590 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*05_05_01_01v1" FT mRNA join(<178..259,4079..4324,4737..5018,5436..>5590) FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*05_05_01_01v1" FT /product="MHC class II antigen" FT CDS join(178..259,4079..4324,4737..5018,5436..5590) FT /codon_start=1 FT /gene="HLA-DQA1" FT /allele="HLA-DQA1*05_05_01_01v1" FT /product="MHC class II antigen" FT /db_xref="GOA:Q5Y7C6" FT /db_xref="InterPro:IPR001003" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:Q5Y7C6" FT /protein_id="ANG08773.1" FT /translation="MILNKALMLGTLALTTVMSPCGGEDIVADHVASYGVNLYQSYGPS FT GQYTHEFDGDEQFYVDLGRKETVWCLPVLRQFRFDPQFALTNIAVLKHNLNSLIKRSNS FT TAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFL FT SKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCAL FT GLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL" XX SQ Sequence 5764 BP; 1683 A; 1203 C; 1262 G; 1616 T; 0 other; tcttaataca aactcttcaa ctagtaactg aggtgtcatc ataggggatt tttctaatta 60 gccaaaacct gacttggcag ggtttggttt gggtgtcttc agattgcctt gtctcgaggt 120 cctcacaatt gctctacaac tcagaacagc aactgctaag gctgccttgg gaagaggatg 180 atcctaaaca aagctctgat gctggggacc cttgccctga ccaccgtgat gagcccctgt 240 ggaggtgaag acattgtggg tgagtgtatg agtgagggat gttctctgga gctggaagag 300 aggaaattga agcaaaagag agaaagcgat ttgcagagaa attgtagaga tttcctaagg 360 gtcccttcag tattaagaga tttaaaaatt atggctgttc ctccttcagg aaaccagagt 420 cccaacctac tctttttgtt atctatgctg ttggcgttca ctaaggatgc tattctgttt 480 atattgtatt cagtgactat agcctggagg tctctatgtc attccatcat gattgcctca 540 aaaattagtg aggtttccat caatggataa ttttttatta ttaaaaattt gtgaagtatc 600 attctcaaat ttccctgaac aacttttgaa gcttttcgga tgtctcctgt agtagcgctt 660 ggggtaaatg attccatcaa ttatatactc tatagatatt aagaaagatg cccttttctt 720 tctctcagac ttactaacat ttccacgtgg gaactggcac aggtggggag tgggtaaagg 780 agtccagcag gctgaatgcc ttcaacaatc attttaccac atggtcctca cttactctca 840 gctgcctcat atgtgtcacc tcacaaataa tcaaataaaa tgggcatgta gctaagcttt 900 gtaaatagtg aaaacatgaa tgtcaatttt atttttacat atttctatta taggtatagc 960 ttcacatttc ttttcttttg caaaataagg aatcctttta ttttaaaatt gagaatttat 1020 agtagaaaaa cttggtaaat taaatcattt tattctcaaa ttatcaaccc aaattacctg 1080 ttcttcaact catctaatga agtcctataa aaagaaaagt gggccagaca tggtggctca 1140 tgcctgtaat cccagcactt tgggaggccg aggcaggagg atcctttgag cccaggagtt 1200 gagaccagcc tgggcaacat agcaagacct catctctaca aaaaataaaa attagccagg 1260 tgtggtggtg catgcctgtg gtgccagcta ctcagaaggc tgcagtggga ggactgcttg 1320 agtccaggag gcggaagctg cagtgagcca tgatggcacc actacactcc agccagggca 1380 acagagagaa actctgtctc agaaagaaaa aggaaagaaa gagagaaagg aaggaaagaa 1440 agaaagaagg aaggaaggaa ggaagaaggg gaagggaagg gaaggaaggg aaggaaaggg 1500 aagggaggaa agaaggaagg aaaaaagaaa aagaaagaaa aaagaaagaa aaagaaagaa 1560 agaaagaaaa gagggaagga aagaaagaaa aaggaaggaa ggaagcacag attaattatt 1620 aatcatttgg tctctcttag tcttctctgt ctttgtcatc catctatttc cacctctctt 1680 catgcattcc tttctccctc ttccctttca ggatccatct ctgactccct gcttctttat 1740 atggacagtg gggtttgtaa aacaaaagtt gaaaaatcag atagttaaaa ggtgaagtga 1800 actggaaggt ctaaacttcc acaaccttat taaccatggc tgctcccatt ctgattttgt 1860 tcgacggtgg aagtttcacc tccttctcca gagcacttgg cttctttgtt ccaaatttcc 1920 tttcttcaac ctcacaccag agtgccctgg tcaggctcgg ctcatccatt aggcacaaca 1980 tgggcaatgc agagaaccct ccatactgta aagccacatg agaatgtttt aactcctttt 2040 aagattagaa aaaaatgaaa tttcagagcc taagaaaatg ttttaattca gcctagattg 2100 tattgtcttt ataccaattc agtcataaaa tacaattttc catattttca tggaggaagg 2160 ggcccacaaa agcaagagtg ctcagggctc acatgtcaga atgcagccct ggtcatggct 2220 gatcctggcc ttcttatgat tctgctagtg tgcctgtccg tcttccccaa aatctatgtc 2280 gtcctcaaat atagcaactg taattcaaaa cacgtttgag cacacagtaa gctaagtttt 2340 aaggattcaa agatgaaaag tcatgctgtc ttccctgcag agggtgctca gactagtgat 2400 ggaaacggta tgggatgcag gaaagcagaa ggccattgct gaccagggca gtggactcag 2460 cagaggctga aactatacaa atgacttggt tccagctggg ccagcagggt gacatcctcc 2520 agcaaaactc ggcacccaag acaagtccca gatgaaaaga aggattgctt tgtgtttgat 2580 aaggagtcaa ggtttattgc aaggataagg ctttgttggt ggcctgttaa gacaatccag 2640 ggcagtcata ctggataagg aagaaggtga gctggaagag gaacagacaa acagccagat 2700 attgaggtgg aggagctgga ggtcataacg tggtcaaaaa catgtcgatg agaggactta 2760 gctacaaagt tgttaactta agcagaaacc tcaaggatga attttaggat ttctccagga 2820 agtcctaaaa gataatttca tttcagggag aaaaacaaca aaccactgga aagaccaggg 2880 aacatgaaag gataatgtag tttggtttgc ttggcagata cttatgaagg atgttggact 2940 gtaaggctgt tgatagcctc ctcacagaac atgctacagt acattgtatc tgctccctta 3000 cctacctgac tcttccactc ttcagtttgt tccttaatgg tagaccatgc ctgattggtg 3060 ttttacacat cccctgctat gtctgacact tgtggatgct cagaaagtgg ggaaggaagg 3120 aaagatacaa cggtaaaagg cttacacgtc ttgacaggaa tgtccagttc ggctcatttg 3180 gctggagcca cattgcacgg ctgccattct gctctggcat cctcagacaa gcacactgcc 3240 cattagagga aaaagggttt aatttacctg agtcctcaag tgaatataag tgttaagtca 3300 gaacactgta gacatttagt aacctccttc agaggaaaaa aaaaggtggg gggaaatgac 3360 agaaatccaa aaactagtag agcttccact cttcatttca gaagaaatca gttgctctcc 3420 tctaaggacc attactatta acaaaacaga gaccttgaag gaggcattgt ttatttatta 3480 tatattttgt aatgttatta ccattcttgt tatactattc cttataccct acaattgtta 3540 gcagacatta ttttaaatta ataagatcct gcatgctttt ctttttttaa aaaaaagaaa 3600 gacctctgtg tagagtgtcc tgttctgagc cagtcctgag aggaaagaaa atacaatcag 3660 tttgttatta actgaggaaa gaattaagtg aaagatgaat cttaggaagc agaaggaagt 3720 aaacctaatc tctgactaag aaagctaaat accataataa ctcattcatt ccttcttttg 3780 tttaattaca ttatttaatc ataagtccgt gatgtgccag gcactcagga aatagtaaaa 3840 actggacatg tgatattctg cccttgtgta gcgcacatta tagtgggaaa gaaagcgcaa 3900 ttttaaccgg acaactacca acaataagag cggaggaagc aggggttgga aatgtccaca 3960 ggctgtgcca aagatgaagc ccgtaatatt tgaaagtcag tttctttcat cattttgtgt 4020 attaaggttc tttcttcccc tgttctccac cttcctgctt gtcatcttca ctcatcagct 4080 gaccacgtcg cctcttatgg tgtaaacttg taccagtctt acggtccctc tggccagtac 4140 acccatgaat ttgatggaga tgagcagttc tacgtggacc tggggaggaa ggagactgtc 4200 tggtgtttgc ctgttctcag acaatttaga tttgacccgc aatttgcact gacaaacatc 4260 gctgtcctaa aacataactt gaacagtctg attaaacgct ccaactctac cgctgctacc 4320 aatggtatgt gtcaacaatt ctgcccctct ttactgattt atcccttcat accaagtttc 4380 attattttat ttccaagagg tccccagatc ttctcatggc aattgctgaa attttatcat 4440 ctcccatctc taaaatcaca tattcccatg taatacaagg gtctttccat tatccattca 4500 ttaaatcctt ctcggagagg tctcatcaac ctcctacttt attaaacatg cccacagaga 4560 gaagggcaca ggaataaagc ggaggcaatg tgtcgttgct cccaagcaga aggtaaataa 4620 gacctctttg actatcaggt ggtgaaatgc tggtaggagg gctcttccag gatgtaatgc 4680 agaagctcat ggcagagcta ttcacacttc acatcagtgc tgtttcctca ccacagaggt 4740 tcctgaggtc acagtgtttt ccaagtctcc cgtgacactg ggtcagccca acatcctcat 4800 ctgtcttgtg gacaacatct ttcctcctgt ggtcaacatc acatggctga gcaatgggca 4860 ctcagtcaca gaaggtgttt ctgagaccag cttcctctcc aagagtgatc attccttctt 4920 caagatcagt tacctcaccc tcctcccttc tgctgaggag agttatgact gcaaggtgga 4980 gcactgggga ctggacaagc ctcttctgaa acactggggt aaggatgagt tccaccactt 5040 tttgatgctt tcttgtctgt caagttcaga acttcctgcc ttttactcct atatcccaaa 5100 acttgttttc cacacttcat gggtttcttt ctttctttct ttctttcttt ctttctttct 5160 ttctttcttt ctttctttct ttctttcttt tttgaaagaa taaagcaaca aaagcaaaga 5220 tttattgaaa atgaaagtac acttcacatg gtgggagcgg gcctgagcat aggggctcaa 5280 gagccacttc atgggtttct aatgatagac ttcactctcc tccctaagct ggggaccttg 5340 agtctttgca gagccaaccc tccaccccat cccatcccac acacatgcac atgagcacac 5400 tctgctttct gacctcaacg acttcatatc cacagagcct gagattccag cccctatgtc 5460 agagctcaca gagactgtgg tctgcgccct ggggttgtct gtgggcctcg tgggcattgt 5520 ggtgggcact gtcttcatca tccgaggcct gcgttcagtt ggtgcttcca gacaccaagg 5580 gcccttgtga atcccatcct ggaatggaag gtaagattga gatttgttag agctgaatcc 5640 gcagtatgag aggaaggaaa gtggaggagg ctgtggacat gaatggttga aagttgtagg 5700 ggaattggga agtggcatga tgatgacata ggagcggcct aggacccatc catctcatgt 5760 ctgt 5764 //