Dbfetch
ID KU319307; SV 1; linear; genomic DNA; STD; HUM; 4070 BP. XX AC KU319307; XX DT 27-MAY-2016 (Rel. 128, Created) DT 27-MAY-2016 (Rel. 128, Last updated, Version 1) XX DE Homo sapiens MHC class I antigen (HLA-B) gene, HLA-B*51_01_01_01e3 allele, DE complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4070 RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.; RT "HLA variation in coding and non-coding gene segments"; RL Unpublished. XX RN [2] RP 1-4070 RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.; RT ; RL Submitted (18-DEC-2015) to the INSDC. RL Stanford Blood Center, Stanford School of Medicine, 3165 Porter Drive, Palo RL Alto, CA 94304, USA XX DR MD5; 8dfb080c8ce666ee03b7fd5e39627c84. DR IMGT/HLA; HLA-B*51:01:01:03; HLA16059. XX CC ##Assembly-Data-START## CC Assembly Method :: Program in house v. k1.1 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4070 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <270..>2958 FT /gene="HLA-B" FT /allele="HLA-B*51_01_01_01e3" FT mRNA join(<270..342,472..741,987..1262,1838..2113,2218..2334, FT 2776..2808,2915..>2958) FT /gene="HLA-B" FT /allele="HLA-B*51_01_01_01e3" FT /product="MHC class I antigen" FT CDS join(270..342,472..741,987..1262,1838..2113,2218..2334, FT 2776..2808,2915..2958) FT /codon_start=1 FT /gene="HLA-B" FT /allele="HLA-B*51_01_01_01e3" FT /product="MHC class I antigen" FT /db_xref="GOA:Q546B1" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:Q546B1" FT /protein_id="ANG08722.1" FT /translation="MRVTAPRTVLLLLWGAVALTETWAGSHSMRYFYTAMSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRNTQIFKTNTQTYRENLRI FT ALRYYNQSEAGSHTWQTMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLSSWTAADTA FT AQITQRKWEAAREAEQLRAYLEGLCVEWLRRHLENGKETLQRADPPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQSTIPIVGIVAGLAVLAVVVIGAVVATVMCRRKSSGGK FT GGSYSQAASSDSAQGSDVSLTA" XX SQ Sequence 4070 BP; 772 A; 1149 C; 1227 G; 922 T; 0 other; ccaggccccg ggcggggctc tcagggtctc aggctccgag agccttgtct gcattgggga 60 ggcgcagcgt tggggattcc ccactcccac gagtttcact tcttctccca acctatgtcg 120 ggtccttctt ccaggatact cgtgacgcgt ccccatttcc cactcccatt gggtgtcgga 180 tatctagaga agccaatcag tgtcgccggg gtcccagttc taaagtcccc acgcacccac 240 ccggactcag aatctcctca gacgccgaga tgcgggtcac ggcgccccga accgtcctcc 300 tgctgctctg gggggcagtg gccctgaccg agacctgggc cggtgagtgc ggggtcggga 360 gggaaatggc ctctgtgggg aggagcgagg ggaccgcagg cgggggcgca ggacctgagg 420 agccgcgccg ggaggagggt cgggcgggtc tcagcccctc ctcgccccca ggctcccact 480 ccatgaggta tttctacacc gccatgtccc ggcccggccg cggggagccc cgcttcattg 540 cagtgggcta cgtggacgac acccagttcg tgaggttcga cagcgacgcc gcgagtccga 600 ggacggagcc ccgggcgcca tggatagagc aggaggggcc ggagtattgg gaccggaaca 660 cacagatctt caagaccaac acacagactt accgagagaa cctgcggatc gcgctccgct 720 actacaacca gagcgaggcc ggtgagtgac cccggcccgg ggcgcaggtc acgactcccc 780 atcccccacg tacggcccgg gtcgccccga gtctccgggt ccgagatccg cctccctgag 840 gccgcgggac ccgcccagac cctcgaccgg cgagagcccc aggcgcgttt acccggtttc 900 attttcagtt gaggccaaaa tccccgcggg ttggtcgggg cggggcgggg ctcgggggac 960 ggtgctgacc gcggggccgg ggccagggtc tcacacttgg cagacgatgt atggctgcga 1020 cgtggggccg gacgggcgcc tcctccgcgg gcataaccag tacgcctacg acggcaaaga 1080 ttacatcgcc ctgaacgagg acctgagctc ctggaccgcg gcggacaccg cggctcagat 1140 cacccagcgc aagtgggagg cggcccgtga ggcggagcag ctgagagcct acctggaggg 1200 cctgtgcgtg gagtggctcc gcagacacct ggagaacggg aaggagacgc tgcagcgcgc 1260 gggtaccagg ggcagtgggg agccttcccc atctcctata ggtcgccggg gatggcctcc 1320 cacgagaaga ggaggaaaat gggatcagcg ctagaatgtc gccctccctt gaatggagaa 1380 tggcatgagt tttcctgagt ttcctctgag ggccccctct tctctctagg acaattaagg 1440 gatgacgtct ctgaggaaat ggaggggaag acagtcccta gaatactgat caggggtccc 1500 ctttgacccc tgcagcagcc ttgggaaccg tgacttttcc tctcaggcct tgttctctgc 1560 ctcacactca gtgtgtttgg ggctctgatt ccagcacttc tgagtcactt tacctccact 1620 cagatcagga gcagaagtcc ctgttccccg ctcagagact cgaactttcc aatgaatagg 1680 agattatccc aggtgcctgc gtccaggctg gtgtctgggt tctgtgcccc ttccccacac 1740 caggtgtcct gtccattctc aggctggtca catgggtggt cctagggtgt cccatgagag 1800 atgcaaagcg cctgaatttt ctgactcttc ccatcagacc ccccaaagac acacgtgacc 1860 caccaccccg tctctgacca tgaggccacc ctgaggtgct gggccctggg cttctaccct 1920 gcggagatca cactgacctg gcagcgggat ggcgaggacc aaactcagga cactgagctt 1980 gtggagacca gaccagcagg agatagaacc ttccagaagt gggcagctgt ggtggtgcct 2040 tctggagaag agcagagata cacatgccat gtacagcatg aggggctgcc gaagcccctc 2100 accctgagat ggggtaagga gggggatgag gggtcatatc tcttctcagg gaaagcagga 2160 gcccttctgg agcccttcag cagggtcagg gcccctcgtc ttcccctcct ttcccagagc 2220 catcttccca gtccaccatc cccatcgtgg gcattgttgc tggcctggct gtcctagcag 2280 ttgtggtcat cggagctgtg gtcgctactg tgatgtgtag gaggaagagc tcaggtaggg 2340 aaggggtgag gggtggggtc tgggttttct tgtcccactg ggggtttcaa gccccaggta 2400 gaagtgttcc ctgcctcatt actgggaagc agcatccaca caggggctaa cgcagcctgg 2460 gaccctgtgt gccagcactt actcttttgt gcagcacatg tgacaatgaa ggacggatgt 2520 atcaccttga tggttgtggt gttggggtcc tgatttcagc attcatgagt caggggaagg 2580 tccctgctaa ggacagacct taggagggca gttggtccag gacccacact tgctttcctc 2640 gtgtttcctg atcctgcctt gggtctgtag tcatacttct ggaaattcct tttgggtcca 2700 agacgaggag gttcctctaa gatctcatgg ccctgcttcc tcccagtccc ctcacaggac 2760 attttcttcc cacaggtgga aaaggaggga gctactctca ggctgcgtgt aagtggtggg 2820 ggtgggagtg tggaggagct cacccacccc ataattcctc ctgtcccacg tctcctgcgg 2880 gctctgacca ggtcctgttt ttgttctact ccagccagcg acagtgccca gggctctgat 2940 gtgtctctca cagcttgaaa aggtgagatt cttggggtct agagtgggcg gggggggcgg 3000 ggagggggca gaggggaaag gcctgggtaa tggagattct ttgattggga tgtttcgcgt 3060 gtgtcgtggg ctgttcagag tgtcatcact taccatgact aaccagaatt tgttcatgac 3120 tgttgttttc tgtagcctga gacagctgtc ttgtgaggga ctgagatgca ggatttcttc 3180 actcctcccc tttgtgactt caagagcctc tggcatctct ttctgcaaag gcacctgaat 3240 gtgtctgcgt ccctgttagc ataatgtgag gaggtggaga gacagcccac ccttgtgtcc 3300 actgtgaccc ctgttcccat gctgacctgt gtttcctccc cagtcatctt tcttgttcca 3360 gagaggtggg gctggatgtc tccatctctg tctcaacttt atgtgcactg agctgcaact 3420 tcttacttcc ctactgaaaa taagaatctg aatatacatt tgttttctca aatatttgct 3480 atgagaggtt gatggattaa ttaaataagt caattcctgg aatgtgagag agcaaataaa 3540 gacctgagaa ccttccagaa tctgcatgtt cgctgtgctg agtctattgc aggtggggtg 3600 tggagaaggc tgtggggggc cgagtgtgga cagggcctgt gcccagttgt tgttgagccc 3660 atcatgggct ttatgtggtt agtcctcagc tgggtcacct tcactgcccc attgtccttg 3720 tcccttcagc ggaaacttgt ccagtgggag ctgtgaccac agaggctcac acatcgccca 3780 gggtggcccc tgcacacggg ggtctctgtg cattctgaga caaattttca gagccattca 3840 cctcctgccc tgcttctaga gctccttttc tgctctgctc tcctgccctc tctccctgcc 3900 ctggttctag tgatcttggt gctgaatcca atcccaactc atgaatctgt aaagcagagt 3960 ctaatttaga gttacatttg tctgtgaaat tggacccatc atcaaggact gttctttcct 4020 gaagagagaa cctgattgtg tgctgcagtg tgctggggca gggggtgcgg 4070 //