Dbfetch
ID KU319295; SV 1; linear; genomic DNA; STD; HUM; 4066 BP. XX AC KU319295; XX DT 27-MAY-2016 (Rel. 128, Created) DT 27-MAY-2016 (Rel. 128, Last updated, Version 1) XX DE Homo sapiens MHC class I antigen (HLA-B) gene, HLA-B*44_03_01_01e1 allele, DE complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4066 RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.; RT "HLA variation in coding and non-coding gene segments"; RL Unpublished. XX RN [2] RP 1-4066 RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.; RT ; RL Submitted (18-DEC-2015) to the INSDC. RL Stanford Blood Center, Stanford School of Medicine, 3165 Porter Drive, Palo RL Alto, CA 94304, USA XX DR MD5; 5e30529620dd4cb67df2eec2b68649ff. DR Ensembl-Gn; ENSG00000224608; homo_sapiens. DR Ensembl-Tr; ENST00000435618; homo_sapiens. DR IMGT/HLA; HLA-B*44:03:01:01; HLA00319. XX CC ##Assembly-Data-START## CC Assembly Method :: Program in house v. k1.1 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4066 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <270..>2945 FT /gene="HLA-B" FT /allele="HLA-B*44_03_01_01e1" FT mRNA join(<270..342,472..741,985..1260,1836..2111,2205..2321, FT 2763..2795,2902..>2945) FT /gene="HLA-B" FT /allele="HLA-B*44_03_01_01e1" FT /product="MHC class I antigen" FT CDS join(270..342,472..741,985..1260,1836..2111,2205..2321, FT 2763..2795,2902..2945) FT /codon_start=1 FT /gene="HLA-B" FT /allele="HLA-B*44_03_01_01e1" FT /product="MHC class I antigen" FT /db_xref="GOA:Q2L6G2" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR010579" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="UniProtKB/TrEMBL:Q2L6G2" FT /protein_id="ANG08710.1" FT /translation="MRVTAPRTLLLLLWGAVALTETWAGSHSMRYFYTAMSRPGRGEPR FT FITVGYVDDTLFVRFDSDATSPRKEPRAPWIEQEGPEYWDRETQISKTNTQTYRENLRT FT ALRYYNQSEAGSHIIQRMYGCDVGPDGRLLRGYDQDAYDGKDYIALNEDLSSWTAADTA FT AQITQRKWEAARVAEQLRAYLEGLCVESLRRYLENGKETLQRADPPKTHVTHHPISDHE FT VTLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGK FT GGSYSQAACSDSAQGSDVSLTA" XX SQ Sequence 4066 BP; 763 A; 1145 C; 1239 G; 919 T; 0 other; ccaggtcccg gacggggctc tcagggtctc aggctccgag ggccgcgtct gcaatgggga 60 ggcgcagcgt tggggattcc ccactcccac gagtttcact tcttctccca acctatgtcg 120 ggtccttctt ccaggatact cgtgacgcgt ccccatttcc cactcccatt gggtgtcggg 180 tgtctagaga agccaatcag tgtcgccggg gtcccagttc taaagtcccc acgcacccac 240 ccggactcag aatctcctca gacgccgaga tgcgggtcac ggcgccccga accctcctcc 300 tgctgctctg gggggcagtg gccctgaccg agacctgggc cggtgagtgc ggggtcggga 360 gggaaatggc ctctgtgggg aggagagagg ggaccgcagg cgggggcgca ggacccgggg 420 agccgcgccg ggaggagggt cgggcgggtc tcagcccctc ctcgccccca ggctcccact 480 ccatgaggta tttctacacc gccatgtccc ggcccggccg cggggagccc cgcttcatca 540 ccgtgggcta cgtggacgac acgctgttcg tgaggttcga cagcgacgcc acgagtccga 600 ggaaggagcc gcgggcgcca tggatagagc aggaggggcc ggagtattgg gaccgggaga 660 cacagatctc caagaccaac acacagactt accgagagaa cctgcgcacc gcgctccgct 720 actacaacca gagcgaggcc ggtgagtgac cccggcccgg ggcgcaggtc acgactcccc 780 atcccccacg tacggcccgg gtcgccccga gtctccgggt ccgagatccg cccccgaggc 840 cgcgggaccc gcccagaccc tcgaccggcg agagccccag gcgcgtttac ccggtttcat 900 tttcagttga ggccaaaatc cccgcgggtt ggtcggggcg gggcggggct cgggggacgg 960 ggctgaccgc ggggccgggg ccagggtctc acatcatcca gaggatgtac ggctgcgacg 1020 tggggccgga cgggcgcctc ctccgcgggt atgaccagga cgcctacgac ggcaaggatt 1080 acatcgccct gaacgaggac ctgagctcct ggaccgcggc ggacaccgcg gctcagatca 1140 cccagcgcaa gtgggaggcg gcccgtgtgg cggagcagct gagagcctac ctggagggcc 1200 tgtgcgtgga gtcgctccgc agatacctgg agaacgggaa ggagacgctg cagcgcgcgg 1260 gtaccagggg cagtggggag ccttccccat ctcctatagg tcgccgggga tggcctccca 1320 cgagaagagg aggaaaatgg gatcagcgct agaatgtcgc cctcccttga atggagaatg 1380 gcatgagttt tcctgagttt cctctgaggg ccccctcttc tctctaggac aattaaggga 1440 tgacgtctct gaggaaatgg aggggaagac agtccctaga atactgatca ggggtcccct 1500 ttgacccctg cagcagcctt gggaaccgtg acttttcctc tcaggccttg ttctctgcct 1560 cacactcagt gtgtttgggg ctctgattcc agcacttctg agtcacttta cctccactca 1620 gatcaggagc agaagtccct gttccccgct cagagactcg aactttccaa tgaataggag 1680 attatcccag gtgcctgcgt ccaggctggt gtctgggttc tgtgcccctt ccccacccca 1740 ggtgtcctgt ccattctcag gctggtcaca tgggtggtcc tagggtgtcc catgagagat 1800 gcaaagcgcc tgaattttct gactcttccc atcagacccc ccaaagacac atgtgaccca 1860 ccaccccatc tctgaccatg aggtcaccct gaggtgctgg gccctgggct tctaccctgc 1920 ggagatcaca ctgacctggc agcgggatgg cgaggaccaa actcaggaca ccgagcttgt 1980 ggagaccaga ccagcaggag atagaacctt ccagaagtgg gcagctgtgg tggtgccttc 2040 tggagaagag cagagataca catgccatgt acagcatgag gggctgccga agcccctcac 2100 cctgagatgg ggtaaggagg gggatgaggg gtcatatctc ttctcaggga aagcaggagc 2160 ccttcagcag ggtcagggcc cctcatcttc ccttcctttc ccagagccgt cttcccagtc 2220 caccgtcccc atcgtgggca ttgttgctgg cctggctgtc ctagcagttg tggtcatcgg 2280 agctgtggtc gctgctgtga tgtgtaggag gaagagctca ggtagggaag gggtgagggg 2340 tggggtctgg gttttcttgt cccactgggg gtttcaagcc ccaggtagaa gtgttccctg 2400 cctcattact gggaagcagc atccacacag gggctaacgc agcctgggac cctgtgtgcc 2460 agcacttact cttttgtgca gcacatgtga caatgaagga cggatgtatc accttggtgg 2520 ttgtggtgtt ggggtcctga ttccagcatt catgagtcag gggaaggtcc ctgctaagga 2580 cagaccttag gagggcagtt ggtccaggac ccacacttgc tttcctcgtg tttcctgatc 2640 ctgccttggg tctgtagtca tacttctgga aattcctttt gggtccaaga cgaggaggtt 2700 cctctaagat ctcatggccc tgcttcctcc cagtcccctc acagggcatt ttcttcccac 2760 aggtggaaaa ggagggagct actctcaggc tgcgtgtaag tgatgggggc gggagtgtgg 2820 aggagctcac ccaccccata attcctcctg tcccacgtct cctgcgggct ctgaccaggt 2880 cctgtttttg ttctactcca ggcagcgaca gtgcccaggg ctctgatgtg tctctcacag 2940 cttgaaaagg tgagattctt ggggtctaga gtgggtgggg tggcaggtct gggggtgggt 3000 ggggcagtgg ggaaaggcct gggtaatgga gattctttga ttgggatgtt tcgcgtgtgt 3060 ggtgggctgt ttagagtgtc atcacttacc atgactaacc agaatttgtt catgactgtt 3120 gttttctgta gcctgagaca gctgtcttgt gagggactga gatgcaggat ttcttcacgc 3180 ctcccctttg tgacttcaag agcctctggc atctctttct gcaaaggcac ctgaatgtgt 3240 ctgcgtccct gttagcataa tgtgaggagg tggagagaca gcccaccccc gtgtccaccg 3300 tgacccctgt tcccatgctg acttgtgttt cctccccagt catctttcct gttccagaga 3360 ggtggggctg gatgtctcca tctctgtctc aactttatgt gcactgagct gcaacttctt 3420 acttccctac tgaaaataag aatctgaata taaatttgtt ttctcaaata tttgctatga 3480 gaggttgatg gattaattaa ataagtcaat tcctggaatt tgagagagca aataaagacc 3540 tgagaacctt ccagaatctg catgttcgct gtgctgagtc tgttgcaggt ggggtgtgga 3600 gaaggctgtg gggggccgag tgtggacggg gcctgtgccc atttggtgtt gagtccatca 3660 tgggctttat gtggttagtc gtcagctggg tcaccttcac tgctccattg tccttgtccc 3720 ttcagtggaa acttgtccag cgggagctgt gaccacagag gctcacacat cgcccagggc 3780 ggcccctgca cacgggggtc tctgtgcatt ctgagacaaa ttttcagagc cattcacctc 3840 ctgccctgct tctagagctc cttttctgct ctgctcttct gccctctctc cctgccctgg 3900 ttctagtgat cttggtgctg aatccaatcc caactcatga atctgtaaag cagagtctaa 3960 tttagactta catttgtctg tgaaattgga cccatcatca aggactgttc tttcctgaag 4020 agagaacctg attgtgtgct gcagtgtgct ggggcagggg gtgcgg 4066 //