Dbfetch

ID   KU319269; SV 1; linear; genomic DNA; STD; HUM; 4055 BP.
XX
AC   KU319269;
XX
DT   27-MAY-2016 (Rel. 128, Created)
DT   27-MAY-2016 (Rel. 128, Last updated, Version 1)
XX
DE   Homo sapiens MHC class I antigen (HLA-B) gene, HLA-B*39_01_01_03e2 allele,
DE   complete cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-4055
RA   Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.;
RT   "HLA variation in coding and non-coding gene segments";
RL   Unpublished.
XX
RN   [2]
RP   1-4055
RA   Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.;
RT   ;
RL   Submitted (18-DEC-2015) to the INSDC.
RL   Stanford Blood Center, Stanford School of Medicine, 3165 Porter Drive, Palo
RL   Alto, CA 94304, USA
XX
DR   MD5; 96b2258d883ba70845adfae16708396b.
DR   IMGT/HLA; HLA-B*39:01:01:05; HLA16282.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Program in house v. k1.1
CC   Sequencing Technology :: Illumina
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..4055
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <270..>2944
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*39_01_01_03e2"
FT   mRNA            join(<270..342,471..740,987..1262,1835..2110,2204..2320,
FT                   2762..2794,2901..>2944)
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*39_01_01_03e2"
FT                   /product="MHC class I antigen"
FT   CDS             join(270..342,471..740,987..1262,1835..2110,2204..2320,
FT                   2762..2794,2901..2944)
FT                   /codon_start=1
FT                   /gene="HLA-B"
FT                   /allele="HLA-B*39_01_01_03e2"
FT                   /product="MHC class I antigen"
FT                   /db_xref="GOA:Q549W0"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR010579"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:Q549W0"
FT                   /protein_id="ANG08684.1"
FT                   /translation="MLVMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPR
FT                   FISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQICKTNTQTDRESLRN
FT                   LRGYYNQSEAGSHTLQRMYGCDVGPDGRLLRGHNQFAYDGKDYIALNEDLSSWTAADTA
FT                   AQITQRKWEAARVAEQLRTYLEGTCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE
FT                   ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY
FT                   TCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGK
FT                   GGSYSQAASSDSAQGSDVSLTA"
XX
SQ   Sequence 4055 BP; 772 A; 1143 C; 1221 G; 919 T; 0 other;
     ccaggtcccg gacggggctc tcagggtctc aggctccgag ggccgcgtct gcaatgggga        60
     ggcgcagcgt tggggattcc ccactcccct gagtttcact tcttctccca acttgtgtcg       120
     ggtccttctt ccaggatact cgtgacgcat ccccacttcc cactcccatt gggtgtcgga       180
     tatctagaga agccaatcag cgtcgccggg gtcccagttc taaagtcccc acgcacccac       240
     ccggactcag agtctcctca gacgccgaga tgctggtcat ggcgccccga accgtcctcc       300
     tgctgctctc ggcggccctg gccctgaccg agacctgggc cggtgagtgc gggtcgggag       360
     ggaaatggcc tctgccggga ggagcgaggg gaccgcaggc gggggcgcag gacctgagga       420
     gccgcgccgg gaggagggtc gggcgggtct cagcccctcc tcgcccccag gctcccactc       480
     catgaggtat ttctacacct ccgtgtcccg gcccggccgc ggggagcccc gcttcatctc       540
     agtgggctac gtggacgaca cgcagttcgt gaggttcgac agcgacgccg cgagtccgag       600
     agaggagccg cgggcgccgt ggatagagca ggaggggccg gaatattggg accggaacac       660
     acagatctgc aagaccaaca cacagactga ccgagagagc ctgcggaacc tgcgcggcta       720
     ctacaaccag agcgaggccg gtgagtgacc ccggcccggg gcgcaggtca cgactcccca       780
     tcccccacgt acggcccggg tcgccccgag tctccgggtc cgagatccgc ctccctgagg       840
     ccgcgggacc cgcccagacc ctcgaccggc gagagcccca ggcgcgttta cccggtttca       900
     ttttcagttg aggccaaaat ccccgcgggt tggtcggggc ggggcggggc tcggggggac       960
     ggggctgacc gcggggccgg ggccagggtc tcacaccctc cagaggatgt acggctgcga      1020
     cgtggggccg gacgggcgcc tcctccgcgg gcataaccag ttcgcctacg acggcaagga      1080
     ttacatcgcc ctgaacgagg acctgagctc ctggaccgcg gcggacaccg cggctcagat      1140
     cacccagcgc aagtgggagg cggcccgtgt ggcggagcag ctgagaacct acctggaggg      1200
     cacgtgcgtg gagtggctcc gcagatacct ggagaacggg aaggagacgc tgcagcgcgc      1260
     gggtaccagg ggcagtgggg agccttcccc atctcctata ggtcgccggg gatggcctcc      1320
     aacgagaaga agaggaaaat gggatcagcg ctagaatgtc gccctccctt gaatggagaa      1380
     tggcatgagt tttcctgagt ttcctctgag ggccccctct tctctctagg acaattaagg      1440
     gatgacgtct ctgaggaaat ggaggggaag acagtcccta gaatactgat caggggtccc      1500
     ctttgacccc tgcagcagcc ttgggaacca tgacttttcc tctcaggcct tgttctctgc      1560
     ctcacactca gtgtgtttgg ggctctgatt ccagcacttc tgagtcactt tacctccact      1620
     cagatcagga gcagaagtct ctgttccccg ctcagagact cgaactttcc aatgaataga      1680
     ttatcccagg tgcctgcgtc caggctggtg tctgggttct gtgccccttc cccaccccag      1740
     gtgtcctgtc cattctcagg ctggtcacat gggtggtcct agggtgtccc atgagagatg      1800
     caaagcgcct gaattttctg actcttccca tcagaccccc caaagacaca tgtgacccac      1860
     caccccatct ctgaccatga ggccaccctg aggtgctggg ccctgggctt ctaccctgcg      1920
     gagatcacac tgacctggca gcgggatggc gaggaccaaa ctcaggacac cgagcttgtg      1980
     gagaccagac cagcaggaga cagaaccttc cagaagtggg cagctgtggt ggtgccttct      2040
     ggagaagagc agagatacac atgccatgta cagcatgagg ggctgccgaa gcccctcacc      2100
     ctgagatggg gtaaggaggg ggatgagggg tcatatctct tctcagggaa agcaggagcc      2160
     cttcagcagg gtcagggccc ctcatcttcc cctcctttcc cagagccatc ttcccagtcc      2220
     accgtcccca tcgtgggcat tgttgctggc ctggctgtcc tagcagttgt ggtcatcgga      2280
     gctgtggtcg ctgctgtgat gtgtaggagg aagagttcag gtagggaagg ggtgaggggt      2340
     ggggtctggg ttttcttgtc ccactggggg tttcaagccc caggtagaag tgttccctgc      2400
     atcattactg ggaagcagca tgcacacagg ggctaacgca gcctgggacc ctgtgtgcca      2460
     gcacttactc ttttgtgcag cacatgtgac aatgaaggac ggatgtatca ccttgatggt      2520
     tgtggtgttg gggtcctgat tccagcattc atgagtcagg ggaaggtccc tgctaaggac      2580
     agaccttagg agggcagttg gtccaggacc cacacttgct ttcctcgtgt ttcctgatcc      2640
     tgccctgggt ctgtagtcat acttctggaa attccttttg ggtccaagac taggaggttc      2700
     ctctaagatc tcatggccct gcttcctccc agtcccctca caggacattt tcttcccaca      2760
     ggtggaaaag gagggagcta ctctcaggct gcgtgtaagt ggtgggggtg ggagtgtgga      2820
     ggagctcacc caccccataa ttcctcctgt cccacgtctc ctgtgggctc tgaccaggtc      2880
     ctgtttttgt tctactccag ccagcgacag tgcccagggc tctgatgtgt ctctcacagc      2940
     ttgaaaaggt gagattcttg gggtctagag tgggcggggg ggcggggagg gggcagaggg      3000
     gaaaggcctg ggtaatggag attctttgat tgggatgttt cgcgtgtgtg atgggctgtt      3060
     cagagtgtca tcacttacca tgactaacca gaatttgttc atgactgttg ttttctgtag      3120
     cctgagacag ctgtcttgtg agggactgag atgcaggatt tcttcacgcc tcccctttgt      3180
     gacttcaaga gcctctggca tctctttctg caaaggcacc tgaatgtgtc tgcgtccctg      3240
     ttagcataat gtgaggaggt ggagagacag cccacccttg tgtccactgt gacccctgtt      3300
     cccatgctga cctgtgtttc ctccccagtc atctttcttg ttccagagag gtggggctgg      3360
     atgtctccat ctctgtctca actttatgtg cactgagctg caacttctta cttccctact      3420
     gaaaataaga atctgaatat aaatttgttt tctcaaatat ttgctatgag aggttgatgg      3480
     attaattaaa taagtcaatt cctggaattt gagagagcaa ataaagacct gagaaccttc      3540
     cagaatctgc atgttcgctg tgctgagtct gttgcaggtg gggtgtggag aaggctgtgg      3600
     ggggccaagt gtggacgggg cctgtgccca tttggtgttg agtccatcat gggctttatg      3660
     tggttagtcc tcagttgggt caccttcact gctccattgt ccttgtccct tcagtggaaa      3720
     cttgtccagt gggagctgtg accacagagg ctcacacatc gcccagggcg gcccctgcac      3780
     acgggggtct ctgtgcattc tgagacaaat tttcagagcc attcacctcc tgccctgctt      3840
     ctagagctcc ttttctgctc tgctcttctg ccctctctcc ctgccctggt tctagtgatc      3900
     ttggtgctga atccaatccc aactcatgaa tctgtaaagc agagactaat ttaaacttac      3960
     atttgtctgt gaaattggac ccatcatcaa ggactgttct ttcctgaagg gagaacctga      4020
     ttgtgtgctg cagtgtgctg gggcaggggg tgcgg                                 4055
//