Dbfetch
ID KU319269; SV 1; linear; genomic DNA; STD; HUM; 4055 BP.
XX
AC KU319269;
XX
DT 27-MAY-2016 (Rel. 128, Created)
DT 27-MAY-2016 (Rel. 128, Last updated, Version 1)
XX
DE Homo sapiens MHC class I antigen (HLA-B) gene, HLA-B*39_01_01_03e2 allele,
DE complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-4055
RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.;
RT "HLA variation in coding and non-coding gene segments";
RL Unpublished.
XX
RN [2]
RP 1-4055
RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.;
RT ;
RL Submitted (18-DEC-2015) to the INSDC.
RL Stanford Blood Center, Stanford School of Medicine, 3165 Porter Drive, Palo
RL Alto, CA 94304, USA
XX
DR MD5; 96b2258d883ba70845adfae16708396b.
DR IMGT/HLA; HLA-B*39:01:01:05; HLA16282.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Program in house v. k1.1
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..4055
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <270..>2944
FT /gene="HLA-B"
FT /allele="HLA-B*39_01_01_03e2"
FT mRNA join(<270..342,471..740,987..1262,1835..2110,2204..2320,
FT 2762..2794,2901..>2944)
FT /gene="HLA-B"
FT /allele="HLA-B*39_01_01_03e2"
FT /product="MHC class I antigen"
FT CDS join(270..342,471..740,987..1262,1835..2110,2204..2320,
FT 2762..2794,2901..2944)
FT /codon_start=1
FT /gene="HLA-B"
FT /allele="HLA-B*39_01_01_03e2"
FT /product="MHC class I antigen"
FT /db_xref="GOA:Q549W0"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:Q549W0"
FT /protein_id="ANG08684.1"
FT /translation="MLVMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPR
FT FISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQICKTNTQTDRESLRN
FT LRGYYNQSEAGSHTLQRMYGCDVGPDGRLLRGHNQFAYDGKDYIALNEDLSSWTAADTA
FT AQITQRKWEAARVAEQLRTYLEGTCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGK
FT GGSYSQAASSDSAQGSDVSLTA"
XX
SQ Sequence 4055 BP; 772 A; 1143 C; 1221 G; 919 T; 0 other;
ccaggtcccg gacggggctc tcagggtctc aggctccgag ggccgcgtct gcaatgggga 60
ggcgcagcgt tggggattcc ccactcccct gagtttcact tcttctccca acttgtgtcg 120
ggtccttctt ccaggatact cgtgacgcat ccccacttcc cactcccatt gggtgtcgga 180
tatctagaga agccaatcag cgtcgccggg gtcccagttc taaagtcccc acgcacccac 240
ccggactcag agtctcctca gacgccgaga tgctggtcat ggcgccccga accgtcctcc 300
tgctgctctc ggcggccctg gccctgaccg agacctgggc cggtgagtgc gggtcgggag 360
ggaaatggcc tctgccggga ggagcgaggg gaccgcaggc gggggcgcag gacctgagga 420
gccgcgccgg gaggagggtc gggcgggtct cagcccctcc tcgcccccag gctcccactc 480
catgaggtat ttctacacct ccgtgtcccg gcccggccgc ggggagcccc gcttcatctc 540
agtgggctac gtggacgaca cgcagttcgt gaggttcgac agcgacgccg cgagtccgag 600
agaggagccg cgggcgccgt ggatagagca ggaggggccg gaatattggg accggaacac 660
acagatctgc aagaccaaca cacagactga ccgagagagc ctgcggaacc tgcgcggcta 720
ctacaaccag agcgaggccg gtgagtgacc ccggcccggg gcgcaggtca cgactcccca 780
tcccccacgt acggcccggg tcgccccgag tctccgggtc cgagatccgc ctccctgagg 840
ccgcgggacc cgcccagacc ctcgaccggc gagagcccca ggcgcgttta cccggtttca 900
ttttcagttg aggccaaaat ccccgcgggt tggtcggggc ggggcggggc tcggggggac 960
ggggctgacc gcggggccgg ggccagggtc tcacaccctc cagaggatgt acggctgcga 1020
cgtggggccg gacgggcgcc tcctccgcgg gcataaccag ttcgcctacg acggcaagga 1080
ttacatcgcc ctgaacgagg acctgagctc ctggaccgcg gcggacaccg cggctcagat 1140
cacccagcgc aagtgggagg cggcccgtgt ggcggagcag ctgagaacct acctggaggg 1200
cacgtgcgtg gagtggctcc gcagatacct ggagaacggg aaggagacgc tgcagcgcgc 1260
gggtaccagg ggcagtgggg agccttcccc atctcctata ggtcgccggg gatggcctcc 1320
aacgagaaga agaggaaaat gggatcagcg ctagaatgtc gccctccctt gaatggagaa 1380
tggcatgagt tttcctgagt ttcctctgag ggccccctct tctctctagg acaattaagg 1440
gatgacgtct ctgaggaaat ggaggggaag acagtcccta gaatactgat caggggtccc 1500
ctttgacccc tgcagcagcc ttgggaacca tgacttttcc tctcaggcct tgttctctgc 1560
ctcacactca gtgtgtttgg ggctctgatt ccagcacttc tgagtcactt tacctccact 1620
cagatcagga gcagaagtct ctgttccccg ctcagagact cgaactttcc aatgaataga 1680
ttatcccagg tgcctgcgtc caggctggtg tctgggttct gtgccccttc cccaccccag 1740
gtgtcctgtc cattctcagg ctggtcacat gggtggtcct agggtgtccc atgagagatg 1800
caaagcgcct gaattttctg actcttccca tcagaccccc caaagacaca tgtgacccac 1860
caccccatct ctgaccatga ggccaccctg aggtgctggg ccctgggctt ctaccctgcg 1920
gagatcacac tgacctggca gcgggatggc gaggaccaaa ctcaggacac cgagcttgtg 1980
gagaccagac cagcaggaga cagaaccttc cagaagtggg cagctgtggt ggtgccttct 2040
ggagaagagc agagatacac atgccatgta cagcatgagg ggctgccgaa gcccctcacc 2100
ctgagatggg gtaaggaggg ggatgagggg tcatatctct tctcagggaa agcaggagcc 2160
cttcagcagg gtcagggccc ctcatcttcc cctcctttcc cagagccatc ttcccagtcc 2220
accgtcccca tcgtgggcat tgttgctggc ctggctgtcc tagcagttgt ggtcatcgga 2280
gctgtggtcg ctgctgtgat gtgtaggagg aagagttcag gtagggaagg ggtgaggggt 2340
ggggtctggg ttttcttgtc ccactggggg tttcaagccc caggtagaag tgttccctgc 2400
atcattactg ggaagcagca tgcacacagg ggctaacgca gcctgggacc ctgtgtgcca 2460
gcacttactc ttttgtgcag cacatgtgac aatgaaggac ggatgtatca ccttgatggt 2520
tgtggtgttg gggtcctgat tccagcattc atgagtcagg ggaaggtccc tgctaaggac 2580
agaccttagg agggcagttg gtccaggacc cacacttgct ttcctcgtgt ttcctgatcc 2640
tgccctgggt ctgtagtcat acttctggaa attccttttg ggtccaagac taggaggttc 2700
ctctaagatc tcatggccct gcttcctccc agtcccctca caggacattt tcttcccaca 2760
ggtggaaaag gagggagcta ctctcaggct gcgtgtaagt ggtgggggtg ggagtgtgga 2820
ggagctcacc caccccataa ttcctcctgt cccacgtctc ctgtgggctc tgaccaggtc 2880
ctgtttttgt tctactccag ccagcgacag tgcccagggc tctgatgtgt ctctcacagc 2940
ttgaaaaggt gagattcttg gggtctagag tgggcggggg ggcggggagg gggcagaggg 3000
gaaaggcctg ggtaatggag attctttgat tgggatgttt cgcgtgtgtg atgggctgtt 3060
cagagtgtca tcacttacca tgactaacca gaatttgttc atgactgttg ttttctgtag 3120
cctgagacag ctgtcttgtg agggactgag atgcaggatt tcttcacgcc tcccctttgt 3180
gacttcaaga gcctctggca tctctttctg caaaggcacc tgaatgtgtc tgcgtccctg 3240
ttagcataat gtgaggaggt ggagagacag cccacccttg tgtccactgt gacccctgtt 3300
cccatgctga cctgtgtttc ctccccagtc atctttcttg ttccagagag gtggggctgg 3360
atgtctccat ctctgtctca actttatgtg cactgagctg caacttctta cttccctact 3420
gaaaataaga atctgaatat aaatttgttt tctcaaatat ttgctatgag aggttgatgg 3480
attaattaaa taagtcaatt cctggaattt gagagagcaa ataaagacct gagaaccttc 3540
cagaatctgc atgttcgctg tgctgagtct gttgcaggtg gggtgtggag aaggctgtgg 3600
ggggccaagt gtggacgggg cctgtgccca tttggtgttg agtccatcat gggctttatg 3660
tggttagtcc tcagttgggt caccttcact gctccattgt ccttgtccct tcagtggaaa 3720
cttgtccagt gggagctgtg accacagagg ctcacacatc gcccagggcg gcccctgcac 3780
acgggggtct ctgtgcattc tgagacaaat tttcagagcc attcacctcc tgccctgctt 3840
ctagagctcc ttttctgctc tgctcttctg ccctctctcc ctgccctggt tctagtgatc 3900
ttggtgctga atccaatccc aactcatgaa tctgtaaagc agagactaat ttaaacttac 3960
atttgtctgt gaaattggac ccatcatcaa ggactgttct ttcctgaagg gagaacctga 4020
ttgtgtgctg cagtgtgctg gggcaggggg tgcgg 4055
//