Dbfetch
ID KU319213; SV 1; linear; genomic DNA; STD; HUM; 4303 BP.
XX
AC KU319213;
XX
DT 27-MAY-2016 (Rel. 128, Created)
DT 27-MAY-2016 (Rel. 128, Last updated, Version 1)
XX
DE Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*16_01_01e1 allele,
DE complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-4303
RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.;
RT "HLA variation in coding and non-coding gene segments";
RL Unpublished.
XX
RN [2]
RP 1-4303
RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.;
RT ;
RL Submitted (18-DEC-2015) to the INSDC.
RL Stanford Blood Center, Stanford School of Medicine, 3165 Porter Drive, Palo
RL Alto, CA 94304, USA
XX
DR MD5; 9a64ce7b3cdb8494256675faa8a90f76.
DR Ensembl-Gn; ENSG00000237022; homo_sapiens.
DR Ensembl-Tr; ENST00000438171; homo_sapiens.
DR IMGT/HLA; HLA-C*16:01:01:01; HLA00475.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Program in house v. k1.1
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..4303
FT /organism="Homo sapiens"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:9606"
FT gene <496..>3390
FT /gene="HLA-C"
FT /allele="HLA-C*16_01_01e1"
FT mRNA join(<496..568,699..968,1215..1490,2078..2353,2475..2594,
FT 3034..3066,3174..3221,3386..>3390)
FT /gene="HLA-C"
FT /allele="HLA-C*16_01_01e1"
FT /product="MHC class I antigen"
FT CDS join(496..568,699..968,1215..1490,2078..2353,2475..2594,
FT 3034..3066,3174..3221,3386..3390)
FT /codon_start=1
FT /gene="HLA-C"
FT /allele="HLA-C*16_01_01e1"
FT /product="MHC class I antigen"
FT /db_xref="GOA:O78179"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR010579"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="UniProtKB/TrEMBL:O78179"
FT /protein_id="ANG08629.1"
FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR
FT FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRN
FT LRGYYNQSEAGSHTLQWMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA
FT AQITQRKWEAARAAEQQRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHE
FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG
FT KGGSCSQAASSNSAQGSDESLIACKA"
XX
SQ Sequence 4303 BP; 830 A; 1209 C; 1296 G; 968 T; 0 other;
ttattttgct ggatgtagtt taatattacc tgaggtaagg taaggcaaag agtgggaggc 60
agggagtcca gttcagggac ggggattcca ggagaagtga aggggaaggg gctgggcgca 120
gcctgggggt ctctccctgg tttccacaga cagatccttg gccaggactc aggcacacag 180
tgtgacaaag atgcttggtg taggagaaga gggatcagga cgaagtccca ggtcccgggc 240
ggggctctca gggtctcagg ctccaagggc cgtgtctgca ctggggaggc gccgcgttga 300
ggattctcca ctcccctgag tttcacttct tctcccaacc tgcgtcgggt ccttcttcct 360
gaatactcat gacgcgtccc caattcccac tcccattggg tgtcgggttc tagagaagcc 420
aatcagcgtc tccgcagtcc cggttctaaa gtccccagtc acccacccgg actcggattc 480
tccccagacg ccgagatgcg ggtcatggcg ccccgaaccc tcatcctgct gctctcggga 540
gccctggccc tgaccgagac ctgggcctgt gagtgcgggg ttgggaggga aacggcctct 600
gcggagagga gcgaggggcc cgcccggcga gggcgcagga cccggggagc cgcgcaggga 660
ggagggtcgg gcgggtctca gcccctcctc gcccccaggc tcccactcca tgaggtattt 720
ctacaccgcc gtgtcccggc ccggccgcgg agagccccgc ttcatcgcag tgggctacgt 780
ggacgacacg cagttcgtgc ggttcgacag cgacgccgcg agtccaagag gggagccgcg 840
ggcgccgtgg gtggagcagg aggggccgga gtattgggac cgggagacac agaagtacaa 900
gcgccaggca cagactgacc gagtgagcct gcggaacctg cgcggctact acaaccagag 960
cgaggccggt gagtgacccc ggcccggggc gcaggtcacg acccctcccc atcccccacg 1020
gacggcccgg gtcgccccga gtctcccggt ctgagatcca ccccgaggct gcggaacccg 1080
cccagaccct cggccggaga gagccccagt cacctttacc cggtttcatt ttcagtttag 1140
gccaaaatcc ccgcgggttg gtcggggctg gggcggggct cgcgggacgg ggctgaccac 1200
gggggcgggg ccagggtctc acaccctcca gtggatgtat ggctgcgacc tggggcccga 1260
cgggcgcctc ctccgcgggt atgaccagtc cgcctacgac ggcaaggatt acatcgccct 1320
gaacgaggac ctgcgctcct ggaccgccgc ggacacggcg gctcagatca cccagcgcaa 1380
gtgggaggcg gcccgtgcgg cggagcagca gagagcctac ctggagggca cgtgcgtgga 1440
gtggctccgc agatacctgg agaacgggaa ggagacgctg cagcgcgcgg gtaccagggg 1500
cagtggggag ccttccccat ctcctgtaga tctcccggga tggcctccca cgaggagggg 1560
aggaaaatgg gatcagcgct agaatatcgc cctcccttga atggagaatg ggatgagttt 1620
tcctgagttt cctctgaggg ccccctctgc tctctaggac aattaaggga tgaagtcctt 1680
gaggaaatgg aggggaagac agtccctgga atactgatca ggggtcccct ttgaccactt 1740
tgaccactgc agcagctgtg gtcaggctgc tgacctttct ctcaggcctt gttctctgcc 1800
tcatgctcaa tgtgtttgaa ggtttgattc cagcttttct gagttcttca gcctccactc 1860
aggtcaggac cagaagtcgc tgttcctccc tcagagacta gaactttcca atgaatagga 1920
gattatccca ggtgcctgtg tccaggctgg cgtctgggtt ctgtgccccc ttccccaccc 1980
caggtgtcct gtccattctc aggatggtca catgggcgct gttggagtgt cgcaagagag 2040
atacaaagtg tctgaatttt ctgactcttc ccgtcagaac acccaaagac acacgtgacc 2100
caccatctcg tctctgacca tgaggccacc ctgaggtgct gggccctggg cttctaccct 2160
gcggagatca cactgacctg gcagcgggat ggcgaggacc aaactcagga caccgagctt 2220
gtggagacca ggccagcagg agatggaacc ttccagaagt gggcagctgt ggtggtgcct 2280
tctggagaag agcagagata cacgtgccat gtgcagcacg aggggctgcc ggagcccctc 2340
accctgagat ggggtaagga gggggatgag gggtcatgtg tcttctcagg gaaagcagaa 2400
gtcctggagc ccttcagccg ggtcagggct gaggcttggg ggtcagggcc cctcaccttc 2460
ccctcctttc ccagagccat cttcccagcc caccatcccc atcgtgggca tcgttgctgg 2520
cctggctgtc ctggctgtcc tagctgtcct aggagctgtg gtggctgttg ttatgtgtag 2580
gaggaagagc tcaggtaggg aaggggtgag gagtggggtc tgggttttct tgtcccactg 2640
ggagtttcaa gccccaggta gaagtgtgcc ccacctcgtt actggaagca ccatccacac 2700
atgggccatc ccagcctggg accctgtgtg ccagcactta ctctgttgtg aagcacatga 2760
caatgaagga cagatgtatc accttgatga ttatggtgtt ggggtccttg attccagcat 2820
tcatgagtca ggggaaggtc cctgctaagg acagacctta ggagggcagt tgctccagaa 2880
cccacagctg ctttccctgt gtttcctgat cctgccctgg gtctgcagtc atagttctgg 2940
aaacttctct tgggtccaag actaggaggt tcccctaaga tcgcatggcc ctgcctcctc 3000
cctgtcccct cacagggcat tttcttccca caggtggaaa aggagggagc tgctctcagg 3060
ctgcgtgtaa gtgatggcag tgggcgtgtg gaggagctca cccaccccat aattcctctt 3120
gtcccacatc tcctgcgggc tctgaccagg tctttttttt tgttctaccc cagccagcaa 3180
cagtgcccag ggctctgatg agtctctcat cgcttgtaaa ggtgagattc tggggagctg 3240
aagtggtcgg gggtggggca gagggaaaag gcctaggtaa tggggatcct ttgattggga 3300
cgtttcgaat gtgtggtgag ctgttcagag tgtcatcact taccatgact gacctgaatt 3360
tgttcatgac tattgtgttc tgtagcctga gacagctgcc tgtgtgggac tgagatgcag 3420
gatttcttca cacctctcct ttgtgacttc aagagcctct ggcatctctt tctgcaaagg 3480
catctgaatg cgtctgcgtt cctgttagca taatgtgagg aggtggagag acagcccacc 3540
cccgtgtcca ccgtgacccc tgtccccaca ctgacctgtg ttccctcccc gatcatcttt 3600
cctgttccag agaagtgggc tggatgtctc catctctgtc tcaactttac gtgtactgag 3660
ctgcaacttc ttacttccct actgaaaata agaatctgaa tataaatttg ttttctcaaa 3720
tatttgctat gagaggttga tggattaatt aaataagtca atccctggaa gttgagagag 3780
caaataaaga cctgagaacc ttccagaatc cgcatgttcg ctgtgctgag tctgttgcag 3840
gtgggggtgg ggaaggctgt gaggagacga gtgtggacgg ggcctgtgcc tagttgctgt 3900
tcagttcttc atgggcttta tgtggtcagt cctcagctgg gtcaccttca ctgctccatt 3960
gtccttgtcc cttcagtgga aacttgtcca gcgggagctg tgaccacaga ggctcacaca 4020
tcgcccaggg cagccgctgc acactggagt ccctgtgctt tctgagacaa attttcagac 4080
ccattcagct cctgccctcc ttctagggct cctcttctgc tttggtctcc tgccctctct 4140
cccttccctg attccagtaa tcttcgtgct gactccaatc ccaactcatg aatctaaagc 4200
agagcctaat ttagatttat atttgtttgt agaattgggt ccatagtcta gaattgttcc 4260
ttcctgaaga gagaaacctg attgtgtgct gcagtgtgcg ggg 4303
//