Dbfetch

ID   KU319213; SV 1; linear; genomic DNA; STD; HUM; 4303 BP.
XX
AC   KU319213;
XX
DT   27-MAY-2016 (Rel. 128, Created)
DT   27-MAY-2016 (Rel. 128, Last updated, Version 1)
XX
DE   Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*16_01_01e1 allele,
DE   complete cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-4303
RA   Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.;
RT   "HLA variation in coding and non-coding gene segments";
RL   Unpublished.
XX
RN   [2]
RP   1-4303
RA   Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.;
RT   ;
RL   Submitted (18-DEC-2015) to the INSDC.
RL   Stanford Blood Center, Stanford School of Medicine, 3165 Porter Drive, Palo
RL   Alto, CA 94304, USA
XX
DR   MD5; 9a64ce7b3cdb8494256675faa8a90f76.
DR   Ensembl-Gn; ENSG00000237022; homo_sapiens.
DR   Ensembl-Tr; ENST00000438171; homo_sapiens.
DR   IMGT/HLA; HLA-C*16:01:01:01; HLA00475.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Program in house v. k1.1
CC   Sequencing Technology :: Illumina
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..4303
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <496..>3390
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*16_01_01e1"
FT   mRNA            join(<496..568,699..968,1215..1490,2078..2353,2475..2594,
FT                   3034..3066,3174..3221,3386..>3390)
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*16_01_01e1"
FT                   /product="MHC class I antigen"
FT   CDS             join(496..568,699..968,1215..1490,2078..2353,2475..2594,
FT                   3034..3066,3174..3221,3386..3390)
FT                   /codon_start=1
FT                   /gene="HLA-C"
FT                   /allele="HLA-C*16_01_01e1"
FT                   /product="MHC class I antigen"
FT                   /db_xref="GOA:O78179"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR010579"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:O78179"
FT                   /protein_id="ANG08629.1"
FT                   /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR
FT                   FIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRN
FT                   LRGYYNQSEAGSHTLQWMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTA
FT                   AQITQRKWEAARAAEQQRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHE
FT                   ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY
FT                   TCHVQHEGLPEPLTLRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGG
FT                   KGGSCSQAASSNSAQGSDESLIACKA"
XX
SQ   Sequence 4303 BP; 830 A; 1209 C; 1296 G; 968 T; 0 other;
     ttattttgct ggatgtagtt taatattacc tgaggtaagg taaggcaaag agtgggaggc        60
     agggagtcca gttcagggac ggggattcca ggagaagtga aggggaaggg gctgggcgca       120
     gcctgggggt ctctccctgg tttccacaga cagatccttg gccaggactc aggcacacag       180
     tgtgacaaag atgcttggtg taggagaaga gggatcagga cgaagtccca ggtcccgggc       240
     ggggctctca gggtctcagg ctccaagggc cgtgtctgca ctggggaggc gccgcgttga       300
     ggattctcca ctcccctgag tttcacttct tctcccaacc tgcgtcgggt ccttcttcct       360
     gaatactcat gacgcgtccc caattcccac tcccattggg tgtcgggttc tagagaagcc       420
     aatcagcgtc tccgcagtcc cggttctaaa gtccccagtc acccacccgg actcggattc       480
     tccccagacg ccgagatgcg ggtcatggcg ccccgaaccc tcatcctgct gctctcggga       540
     gccctggccc tgaccgagac ctgggcctgt gagtgcgggg ttgggaggga aacggcctct       600
     gcggagagga gcgaggggcc cgcccggcga gggcgcagga cccggggagc cgcgcaggga       660
     ggagggtcgg gcgggtctca gcccctcctc gcccccaggc tcccactcca tgaggtattt       720
     ctacaccgcc gtgtcccggc ccggccgcgg agagccccgc ttcatcgcag tgggctacgt       780
     ggacgacacg cagttcgtgc ggttcgacag cgacgccgcg agtccaagag gggagccgcg       840
     ggcgccgtgg gtggagcagg aggggccgga gtattgggac cgggagacac agaagtacaa       900
     gcgccaggca cagactgacc gagtgagcct gcggaacctg cgcggctact acaaccagag       960
     cgaggccggt gagtgacccc ggcccggggc gcaggtcacg acccctcccc atcccccacg      1020
     gacggcccgg gtcgccccga gtctcccggt ctgagatcca ccccgaggct gcggaacccg      1080
     cccagaccct cggccggaga gagccccagt cacctttacc cggtttcatt ttcagtttag      1140
     gccaaaatcc ccgcgggttg gtcggggctg gggcggggct cgcgggacgg ggctgaccac      1200
     gggggcgggg ccagggtctc acaccctcca gtggatgtat ggctgcgacc tggggcccga      1260
     cgggcgcctc ctccgcgggt atgaccagtc cgcctacgac ggcaaggatt acatcgccct      1320
     gaacgaggac ctgcgctcct ggaccgccgc ggacacggcg gctcagatca cccagcgcaa      1380
     gtgggaggcg gcccgtgcgg cggagcagca gagagcctac ctggagggca cgtgcgtgga      1440
     gtggctccgc agatacctgg agaacgggaa ggagacgctg cagcgcgcgg gtaccagggg      1500
     cagtggggag ccttccccat ctcctgtaga tctcccggga tggcctccca cgaggagggg      1560
     aggaaaatgg gatcagcgct agaatatcgc cctcccttga atggagaatg ggatgagttt      1620
     tcctgagttt cctctgaggg ccccctctgc tctctaggac aattaaggga tgaagtcctt      1680
     gaggaaatgg aggggaagac agtccctgga atactgatca ggggtcccct ttgaccactt      1740
     tgaccactgc agcagctgtg gtcaggctgc tgacctttct ctcaggcctt gttctctgcc      1800
     tcatgctcaa tgtgtttgaa ggtttgattc cagcttttct gagttcttca gcctccactc      1860
     aggtcaggac cagaagtcgc tgttcctccc tcagagacta gaactttcca atgaatagga      1920
     gattatccca ggtgcctgtg tccaggctgg cgtctgggtt ctgtgccccc ttccccaccc      1980
     caggtgtcct gtccattctc aggatggtca catgggcgct gttggagtgt cgcaagagag      2040
     atacaaagtg tctgaatttt ctgactcttc ccgtcagaac acccaaagac acacgtgacc      2100
     caccatctcg tctctgacca tgaggccacc ctgaggtgct gggccctggg cttctaccct      2160
     gcggagatca cactgacctg gcagcgggat ggcgaggacc aaactcagga caccgagctt      2220
     gtggagacca ggccagcagg agatggaacc ttccagaagt gggcagctgt ggtggtgcct      2280
     tctggagaag agcagagata cacgtgccat gtgcagcacg aggggctgcc ggagcccctc      2340
     accctgagat ggggtaagga gggggatgag gggtcatgtg tcttctcagg gaaagcagaa      2400
     gtcctggagc ccttcagccg ggtcagggct gaggcttggg ggtcagggcc cctcaccttc      2460
     ccctcctttc ccagagccat cttcccagcc caccatcccc atcgtgggca tcgttgctgg      2520
     cctggctgtc ctggctgtcc tagctgtcct aggagctgtg gtggctgttg ttatgtgtag      2580
     gaggaagagc tcaggtaggg aaggggtgag gagtggggtc tgggttttct tgtcccactg      2640
     ggagtttcaa gccccaggta gaagtgtgcc ccacctcgtt actggaagca ccatccacac      2700
     atgggccatc ccagcctggg accctgtgtg ccagcactta ctctgttgtg aagcacatga      2760
     caatgaagga cagatgtatc accttgatga ttatggtgtt ggggtccttg attccagcat      2820
     tcatgagtca ggggaaggtc cctgctaagg acagacctta ggagggcagt tgctccagaa      2880
     cccacagctg ctttccctgt gtttcctgat cctgccctgg gtctgcagtc atagttctgg      2940
     aaacttctct tgggtccaag actaggaggt tcccctaaga tcgcatggcc ctgcctcctc      3000
     cctgtcccct cacagggcat tttcttccca caggtggaaa aggagggagc tgctctcagg      3060
     ctgcgtgtaa gtgatggcag tgggcgtgtg gaggagctca cccaccccat aattcctctt      3120
     gtcccacatc tcctgcgggc tctgaccagg tctttttttt tgttctaccc cagccagcaa      3180
     cagtgcccag ggctctgatg agtctctcat cgcttgtaaa ggtgagattc tggggagctg      3240
     aagtggtcgg gggtggggca gagggaaaag gcctaggtaa tggggatcct ttgattggga      3300
     cgtttcgaat gtgtggtgag ctgttcagag tgtcatcact taccatgact gacctgaatt      3360
     tgttcatgac tattgtgttc tgtagcctga gacagctgcc tgtgtgggac tgagatgcag      3420
     gatttcttca cacctctcct ttgtgacttc aagagcctct ggcatctctt tctgcaaagg      3480
     catctgaatg cgtctgcgtt cctgttagca taatgtgagg aggtggagag acagcccacc      3540
     cccgtgtcca ccgtgacccc tgtccccaca ctgacctgtg ttccctcccc gatcatcttt      3600
     cctgttccag agaagtgggc tggatgtctc catctctgtc tcaactttac gtgtactgag      3660
     ctgcaacttc ttacttccct actgaaaata agaatctgaa tataaatttg ttttctcaaa      3720
     tatttgctat gagaggttga tggattaatt aaataagtca atccctggaa gttgagagag      3780
     caaataaaga cctgagaacc ttccagaatc cgcatgttcg ctgtgctgag tctgttgcag      3840
     gtgggggtgg ggaaggctgt gaggagacga gtgtggacgg ggcctgtgcc tagttgctgt      3900
     tcagttcttc atgggcttta tgtggtcagt cctcagctgg gtcaccttca ctgctccatt      3960
     gtccttgtcc cttcagtgga aacttgtcca gcgggagctg tgaccacaga ggctcacaca      4020
     tcgcccaggg cagccgctgc acactggagt ccctgtgctt tctgagacaa attttcagac      4080
     ccattcagct cctgccctcc ttctagggct cctcttctgc tttggtctcc tgccctctct      4140
     cccttccctg attccagtaa tcttcgtgct gactccaatc ccaactcatg aatctaaagc      4200
     agagcctaat ttagatttat atttgtttgt agaattgggt ccatagtcta gaattgttcc      4260
     ttcctgaaga gagaaacctg attgtgtgct gcagtgtgcg ggg                        4303
//