Dbfetch
ID KU239966; SV 1; linear; genomic DNA; STD; HUM; 4914 BP. XX AC KU239966; XX DT 25-MAY-2016 (Rel. 128, Created) DT 25-MAY-2016 (Rel. 128, Last updated, Version 1) XX DE Homo sapiens isolate 16Q_A1 MHC class II antigen (HLA-DPA1) gene, partial DE cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4914 RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.; RT "HLA variation in coding and non-coding gene segments"; RL Unpublished. XX RN [2] RP 1-4914 RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.; RT ; RL Submitted (05-DEC-2015) to the INSDC. RL Stanford Blood Center, Stanford School of Medicine, 3165 Porter Drive, Palo RL Alto, CA 94304, USA XX DR MD5; 92078078a3beb1b90db70a72e535143b. DR IMGT/HLA; HLA-DPA1*02:07:01:01; HLA15619. XX CC ##Assembly-Data-START## CC Assembly Method :: Program in house v. k1.1 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4914 FT /organism="Homo sapiens" FT /isolate="16Q_A1" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <19..>4914 FT /gene="HLA-DPA1" FT mRNA join(<19..118,3685..3930,4271..4552,4767..>4914) FT /gene="HLA-DPA1" FT /product="MHC class II antigen" FT CDS join(19..118,3685..3930,4271..4552,4767..>4914) FT /codon_start=1 FT /gene="HLA-DPA1" FT /product="MHC class II antigen" FT /note="DP alpha 1" FT /db_xref="GOA:A0A172WC76" FT /db_xref="InterPro:IPR001003" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A172WC76" FT /protein_id="ANF07065.1" FT /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAMFVQ FT THRPTGEFMFEFDEDEQFYVDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLNTL FT IQRSNHTQAANDPPEVTMFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGV FT AESLFLPRTDYSFHKFHYLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMPETTE FT TVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGP" XX SQ Sequence 4914 BP; 1282 A; 1190 C; 940 G; 1502 T; 0 other; aattatagac cccacaacat gcgccctgaa gacagaatgt tccatatcag agctgtgatc 60 ttgagagccc tctccttggc tttcctgctg agtctccgag gagctggggc catcaagggt 120 gagtgctcag gaggacgcaa gagcgtcggg gtgagtgatg gggtggttca catcaattgt 180 tgcttcagga atcacagatt ttaggggctc attgatctat ctggtcctca tagtctatgt 240 tccctctggc cctcataata ataacagcaa taacagccag aatttatgag acgcctgcat 300 agtttctttc cccatttaca tctcacagga accttcaatg aagataatat tccattcatt 360 tagaaattat tccttttatt tagaaattat tttgaaaaaa ctgaagctca aaaagatgaa 420 taagttttcc aaggttacac agcagatcaa cgagccaagt ttgaagtcca gacccagctc 480 tgagggtcgt acactgcctt ccccagattc ctgcacacag tgacctacta ccagggccct 540 cctatctctc tgggatcccc agcctctgtc ttttgtggct gcttcacagg aactccgagc 600 tatggactct gcattaggag aggaagtgcg aagagtgttt ctgtatcctc tctctcttct 660 aggaccctag ggctcttcct gggtctttgt gggtggtcac aagctttcct ctctcaagac 720 agcagggttg catggtcttg atagccttgt gattcgggtt ctgagagatc caggactgca 780 agggaggcct agacttttga tagctgcaag gactcagcca gagatggacc gtagtgaatg 840 ctcctttttc ctgtagctga aatcagggag aatgacatca agcctgtgca tgatgctgtc 900 attccaaaat ctagtgatgg ggaaggttag aatccataac gtacaagatg cacactggct 960 tcagacagtt ttatttaaga tgtgtagaat aaagaggagg tcaggctggg tagaaccaga 1020 agtatctatt gccctgttcg cggtcacctg agttatttct aatgttatgt tataataaac 1080 accacaatag gcttctcttc atagatgcaa atacttttta gtattcttgg tagaaattcc 1140 taatgagctc agctgtctct tcagggcttc cctgcccagt ggttccttgt ctcttaacat 1200 ttaaacatgt catttacctt aaaaacataa gtgcaaatca actgataaaa aacaaccttg 1260 ccttcagtct gcatcctatc ccagagacac tttctttgtg tcctcacacg tggagctaag 1320 cttctgactt gtctctggta catccctgag gatcctctca tcttggccat caggaacctc 1380 tacagaaggt caaatccagt gggttcttct cagtgcctct gacttgagtt actaataaca 1440 tttgcactgt aatccacttc tttctgatga actaccgtgt ccttattttt ctcctgttta 1500 cctggatcct ccttatcatc ctttaaatca cctcttaatt atcatgttct ctcattatac 1560 cctgagatct cagcaattct gatttttggc actcttcctg gaaaatctca tttaacctgt 1620 gcctgccact aatgactctc agttctctgg cctaaactcc tctcctgaga ccacccataa 1680 tccacaaatg tctatgtatt atttctcctt agatgacttt caggtcttct aagtgcaata 1740 gccccacagt gaactcagta tcttctccca gtcaggctgt cttccccctg agagaagtgg 1800 cttttgccct gttttctgaa tgcctacatt gaagccatct gttccccagg aagccttccc 1860 tgatgtgctg cttgatcgca tcttgtgtat acccacgtat ctgcacttat ccttctgaac 1920 ctgctgttgt cttgtcactt gtgtttcctt ctgtgactta tacgcgtctg cacaacagga 1980 cgtatgtatt atttttattt gagtatttag catctaacag tgtttgacat atagtagtct 2040 tttaatacat atttttgtct gaatggaaat gatattttga agtaaaataa tctgttccat 2100 agctggctga tctttggact gcagaacttg tgaaagtgtt ttttaaaaag cattttaaaa 2160 agtacaaggg acattcatgt attaagaaga tgagttttca ataactgcta gaggactttg 2220 tgtcttttta tattaccctc tttttcctga tgagtccttt gagtccttta aactgaggag 2280 caagctaagt ttcctagtga aatacctata ggatttgttt tgtttagttt caaataccac 2340 tctttgcttg gccacttact gtgtcaggga gtcattctca gtgaaaaata agacacagat 2400 cataccctct agacacttac aattacagtg acaaggagtc attctcctgt ccccacatgt 2460 cagggctgaa aactcacagg gaaatccgtg agttgggaag tgagagcaga agagctccat 2520 agttccttct cactctgatg catttatcat tctaaaccca gactttcaca tacacattca 2580 tcattttctt tcatgataat agttgctttt atcctcttat ctttgctaat tcttacaaac 2640 taataaagac taagaaacaa aataaattaa atcctacagg tgttccaaac tcagcaataa 2700 tttctagttg gcctctaaaa caaaaatcaa aatataaatg taagaaaagt tcagaatgct 2760 tagtacctgc gtgatgaaat aatctgtaca ctaaaccccc gaatcatgag tttacctata 2820 caacaaacct gcacatgtac tcctgaacag aaaataaatg ttgaaatatt tttaaaaagg 2880 aaacaaaagt ttggaacaaa tgccaaaata actgtactgt acttttgaat ttatatgccc 2940 caaatgaaaa atattatcaa caaagctata cattctacat tttcatgttc ataaactaag 3000 acagaaactt taaaactgtc aagagcacta aaatttgaag gatattttct tcttcctctc 3060 aatttcgtat ttttttctac cttttctata ataagaaaaa gaaaatgtcc actctcccaa 3120 ccccacgact ctaaaaacaa ttttacatct gtgtcctaga agaattaaga acttaatggg 3180 atagaaaacc tctctactag ttccaccagt agccgtatga ccttagcaag ttattaatat 3240 gtaacttccc tgcatttcct tacctgtaaa atgtatgata tgtatttgct tcataaagtt 3300 attgtgacaa ttcaacgagt gaatatgtaa agtatttaga aggatgcctg gcacaactaa 3360 gtgctcaaca aatgttagct gtcattgtta ctattactat tgtgtagggt caggatgccc 3420 agactttcaa agaccaggaa gcagcttgac ttatcaatga taaacttttt attttgttct 3480 tcactccttt ctttttataa ctgctcatct gctctgtatt atttccttta tggtgttgct 3540 ccttcttctt ccccatatgt ccttcctttg acctcttact ttcttccttt ttatattcat 3600 aagtctttat tcattctcta gctttgacca cttgcatatt caaactgaca ttttgtcatg 3660 tttttctcta ctttctttat gcagcggacc atgtgtcaac ttatgccatg tttgtacaga 3720 cccatagacc aacaggagag tttatgtttg aatttgatga agatgagcag ttctatgtgg 3780 atctggataa gaaggagacc gtctggcatc tggaggagtt tggccgagcc ttttcctttg 3840 aggctcaggg cgggctggct aacattgcta tattgaacaa caacttgaat accttgatcc 3900 agcgttccaa ccacactcag gccgccaatg gtactgccta tctttgcctc ttcctctgta 3960 gcccaactgg aagggatgag agggcctctc tgccaccctc agactaggaa gcctaagtgc 4020 cccctgctgt gtgatcctct tccactagtg gccgtgggct gatcccacca cagcaagggc 4080 tttcatcctc tcttctcagg agagagaaag gtgagcagag tgaggctggt cagtggtgtg 4140 atacccctct ctgtgattca cagctgccat aaaatctaag gctgaggtag aggaccaccc 4200 tcccccaaga ggtggagcct ttgtgattca tcccagaaga gggacctaac ctggtgctgt 4260 ctcctcctag atccccctga ggtgaccatg tttcccaagg agcctgtgga gctgggccag 4320 cccaacaccc tcatctgcca cattgacagg ttcttcccac cagtgctcaa cgtcacatgg 4380 ctgtgcaatg gggagccggt cactgagggt gtcgctgaga gcctcttcct gcccagaaca 4440 gattacagct tccacaagtt ccattacctg acctttgtgc cctcagcaga ggacgtctat 4500 gactgcaggg tggagcactg gggcttggac cagccgctcc tcaagcactg gggtatgcaa 4560 ctgcttttct ctccataatc tcctggcatc ctctattcca aagacctggt gtcctctgca 4620 ccagctttcc ccactggcca ggtctcagtc ctctcctcgt cctaacatcc aattaactgg 4680 tccataacct tcaattccca caaccatccc aggccagaac caccctcact acacctcctg 4740 accctatctc ttcattcttc ccccagaggc ccaagagcca atccagatgc ctgagacaac 4800 ggagactgtg ctctgtgccc tgggcctggt gctgggccta gtgggcatca tcgtgggcac 4860 cgtcctcatc ataaagtctc tgcgttctgg ccatgacccc cgggcccagg ggcc 4914 //