Dbfetch
ID KU239959; SV 1; linear; genomic DNA; STD; HUM; 4932 BP. XX AC KU239959; XX DT 25-MAY-2016 (Rel. 128, Created) DT 25-MAY-2016 (Rel. 128, Last updated, Version 1) XX DE Homo sapiens isolate IH10 MHC class II antigen (HLA-DPA1) gene, partial DE cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4932 RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.; RT "HLA variation in coding and non-coding gene segments"; RL Unpublished. XX RN [2] RP 1-4932 RA Barsakis K., Babrzadeh F., Chi A., Mindrinos M.N., Fernandez Vina M.A.; RT ; RL Submitted (05-DEC-2015) to the INSDC. RL Stanford Blood Center, Stanford School of Medicine, 3165 Porter Drive, Palo RL Alto, CA 94304, USA XX DR MD5; d262683eec210a3153f71a1aa7f5445d. DR IMGT/HLA; HLA-DPA1*01:03:01:01; HLA00499. XX CC ##Assembly-Data-START## CC Assembly Method :: Program in house v. k1.1 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4932 FT /organism="Homo sapiens" FT /isolate="IH10" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <19..>4932 FT /gene="HLA-DPA1" FT mRNA join(<19..118,3703..3948,4289..4570,4785..>4932) FT /gene="HLA-DPA1" FT /product="MHC class II antigen" FT CDS join(19..118,3703..3948,4289..4570,4785..>4932) FT /codon_start=1 FT /gene="HLA-DPA1" FT /product="MHC class II antigen" FT /note="DP alpha 1" FT /db_xref="GOA:A0A172WC71" FT /db_xref="InterPro:IPR001003" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:A0A172WC71" FT /protein_id="ANF07058.1" FT /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQ FT THRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTL FT IQRSNHTQATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGV FT AESLFLPRTDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTE FT TVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGT" XX SQ Sequence 4932 BP; 1274 A; 1186 C; 963 G; 1509 T; 0 other; aattatagac cccacaacat gcgccctgaa gacagaatgt tccatatcag agctgtgatc 60 ttgagagccc tctccttggc tttcctgctg agtctccgag gagctggggc catcaagggt 120 gagtgctcag gaggacgcag gagcgtcggg gtgagtgatg gggtggttca catcaattgc 180 tgcttcaggg atcacagatt ttaggggctc attgatctat ctggtcctca tagtctatgt 240 tccctctggc cctcataata ataacagcaa taacagccag aatttatgag actcctgcat 300 agtttctttc cccatttaca tctcacagga atcttcaatg aagataatat tccattcatt 360 tagaaattat tccttttatt tagaaattat tttgaaaaaa ctgaagctca aaaagatgaa 420 taagttttcc aaggttacac agcagatcaa cgagccaagt ttgaagtcca gacccagctc 480 tgagggtcat acactgcctt ccccagattc ctgcacacag tgacctacta tcagggccct 540 cctatctctc tgggatcccc agcctctatc ttttgtggct gctttacagg aactccgagc 600 tatggactct gcattaggag acgaagtgca aagagtgttt ctgtatcctc cctctcttct 660 aggaccctag ggctcttcct gggtctttgt gggtggtcac aagctttcct ctctcaagac 720 agcagggttg catggtcttg atagccttgt gattcgggtt ctgagagatt caggactgca 780 agggaggcct agacttttga tagctgcaag gactcagcca gagatggacc gtagtgaatg 840 ctcctttttc ctgtagctga aatcagggag aatgacatca agcctgtgca tgatgctgtc 900 attccaaaat ctagtgatgg ggaaggttag aatccataac gtacaagatg cacactggct 960 tcagacagtt ttatttaaga tgtgtagaat aaagaggagg tcaggctggg tagaaccaga 1020 agtatctatt gccctgttcg cggtcacctg agttatttct aatgttatgt tataataaac 1080 accacaatag gcttctcttc atagatgcaa atacttttta gtattcttgg tagaaattcc 1140 taatgagctc agctgtctct tcagggcttc cctgcccagt ctcttaacat ttaaacatgt 1200 catttacctt aaaaacataa gtgcaaacca actgataaaa aacaaccttg ccttcagtct 1260 gcatcctgtc ccagagacac tttctttgtg tcctcacacg tggagctaag cttctgactt 1320 gtctctggta catccctgag gatcctctca tcttggccat caggaacctc tacagaaggt 1380 caaattcagt gggttcttct cagtgcctct gacttgagtt actaataaca tttgcactat 1440 aatccacttc tttctgatga actaccctgt ccttattttt ctcctgttta cctggatcct 1500 ccttatcatc ttttaaacca cctcttaact atcatgttct ctcattatac cctgagatct 1560 cggcaattct gatttttggc actcttcctg gaaaatctta tttaacctgc acctgccact 1620 aatgactctc agttctatgg cctaaattcc tctcctgaga ccacccataa tccacaaata 1680 tctatgtatt atttctcctt agatgacttt caggtcttct aagtgcaata gccccacagt 1740 gaactcagta tcttctcccg gtcaggctgt cttccctgag agaagtggct tttgccctgt 1800 tttctgaatg cctacattga agccatctgt tccccaggaa gccttccctg atgtgctgtt 1860 tggtcgcatc ttgtgtatac ctacgtatct gcacttatcc ttctgaacct gctgttgtcc 1920 tgtcacttgt gtttccttct gtgacttata cgcgtctgca gaacaggacg tatgtattat 1980 ttttatttgg gtatttagca tctaacagtg tttgacatat agtagtcttt taatacatat 2040 ttttgtctga atggaaatga tattttgaag aaaaataatc tgttccatag ctggctgatc 2100 tttggactgc agaacttgtg aaagtgtttt ttaaaaagca ttttaaaaag tacaagggac 2160 attcatgtat taagaagatg agtttccaat aactgctaga ggactttgtg tctttttatt 2220 ttaccctctt tttcctgatg agtcctttga gtcctttaaa ctgaggagca agctaagttt 2280 cctagtgaaa tacctatagg atttgttttg tttagtttca aataccactc tttgcttggc 2340 cacttactgt gtcagggagt cattctcagt gaaaaataag acacaggtca taccctctag 2400 acacttacaa ttacagtggc aaggagtcat tctcctgtca ctgtaagtgg ccaagcacag 2460 actgggtccc cacatgtcag ggctgaaaac tcacagggaa atctgtgagt tgggaggtga 2520 gagcagaaga gtcccgtagt tccttctcac tctgatgcat ttatcattct aaacccagac 2580 tttcacatac acattcatcg ttttctttca tgataatagt tgcttttatc ctcttatctt 2640 tgctaattct tacaaactaa taaagactaa gaaacaaaat aaattaaatc ctacaggtgt 2700 tccaaactca gcaataattt ctagttggcc tctaaaacaa aaatcaaaat ataaatgtaa 2760 gaaaagttta gaatgcttag tacctgtgtg atgaaataat ctgtacacta aacccccaag 2820 tcatgagttt acctatacaa caaacctgca catgtactcc tgaacataaa ataaatgttg 2880 aaatattttt aaaaaggaaa caaaagtttg gaacaaatgc caaaataact gtactgtact 2940 tttgaattta tatgccccaa atgaaaaata ttatcaacaa agctatacat tctacagttt 3000 catgttcata aactaagaca gaaactttaa aactgtcaag agccctaaaa tttgaaggat 3060 attttcttct tcctctcaat tttgtatttt tttctacctt ttctataata agaaaaagaa 3120 aatgtccatt cccccacccc catgactcta aaaacaattt tacatctgtg tcatagaaaa 3180 attaagatct taatgggaga gaaaacctct ctactagttc cgccagtagc cgtatgacct 3240 tagcaagtta ttaatatgta acttccctgc atttccttac ctgtaaaatg tatgatatgt 3300 atttgcttca tagggttatt gtgacaattc agcgactgaa atatgtaaag tatttagaag 3360 gatgcctggc acaagtaagt gctcaacaaa tgttagctgt cattgttact attactattg 3420 tgtagggtca ggatgcccag actttcaaag accaggaagc agcttgactt atcagtgata 3480 aacttttcat tttgttcttt gctcctttct ttttataact gctcatctgc tctgtattat 3540 ttcctttatg gtgttgctcc ttcttcttcc ccatatgtcc ttcctttgac ctcttacctt 3600 cttccttttt atattcataa gtctttattc attctctagc tttgaccact tgcatattca 3660 aactgacatt ttgtcgtgtt tttctctact gtctttatgc agcggaccat gtgtcaactt 3720 atgccgcgtt tgtacagacg catagaccaa caggggagtt tatgtttgaa tttgatgaag 3780 atgagatgtt ctatgtggat ctggacaaga aggagaccgt ctggcatctg gaggagtttg 3840 gccaagcctt ttcctttgag gctcagggcg ggctggctaa cattgctata ttgaacaaca 3900 acttgaatac cttgatccag cgttccaacc acactcaggc caccaacggt acgccctatc 3960 tttgcctctt cctctgtagc ccaactggaa gggatgagag ggcctctctg ccaccctcag 4020 actaggaagc ctaagtgccc cctgctgtgt gatcctcttc ccctagtggc catgggctga 4080 tcccactaca gcaagggctt gcatcctctc ttctcaggag agagaaaggt gagcagagtg 4140 aggctggtca gtggtgtgat acccctgtct gtgattcaga gctgccataa aatctaaggc 4200 tgaggtagag gaccaccctc ccctaagagg tggagccttt gtgattcatc ccagaagagg 4260 ggcctaacct ggtgctgtct ccttccagat ccccctgagg tgaccgtgtt tcccaaggag 4320 cctgtggagc tgggccagcc caacaccctc atctgccaca ttgacaagtt cttcccacca 4380 gtgctcaacg tcacgtggct gtgcaacggg gagctggtca ctgagggtgt cgctgagagc 4440 ctcttcctgc ccagaacaga ttacagcttc cacaagttcc attacctgac ctttgtgccc 4500 tcagcagagg acttctatga ctgcagggtg gagcactggg gcttggacca gccgctcctc 4560 aagcactggg gtatgcaact gcttttctct ccataatctc ctggcatcct ctattccaaa 4620 gacctggtgt cctctgcacc agctttccgc actggctggg tctcagtcct ctcctcgtcc 4680 taacatccaa ttaactggtc cataaccttc aattcccaca accatcccag gccatcacca 4740 ccctcactgc acctcctgac cctatctctt cattcttccc ccagaggccc aagagccaat 4800 ccagatgcct gagacaacgg agactgtgct ctgtgccctg ggcctggtgc tgggcctagt 4860 cggcatcatc gtgggcaccg tcctcatcat aaagtctctg cgttctggcc atgacccccg 4920 ggcccagggg ac 4932 //