Dbfetch
ID KT735121; SV 1; linear; genomic DNA; STD; HUM; 5165 BP. XX AC KT735121; XX DT 04-MAR-2016 (Rel. 128, Created) DT 04-MAR-2016 (Rel. 128, Last updated, Version 1) XX DE Homo sapiens isolate BY01267 MHC class II antigen (HLA-DPA1) gene, DE HLA-DPA1*01:03:01:04 allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-5165 RA Lazaro A.M., Hou L., Hurley C.K.; RT "Novel HLA DPA1 allele"; RL Unpublished. XX RN [2] RP 1-5165 RA Lazaro A.M., Hou L., Hurley C.K.; RT ; RL Submitted (11-SEP-2015) to the INSDC. RL Oncology, Georgetown University, 3970 Reservoir Rd, N.W., Washington, DC RL 20057, USA XX DR MD5; 1a88228c58a155a22f7f559f331c67c2. DR Ensembl-Gn; ENSG00000168384; homo_sapiens. DR Ensembl-Gn; ENSG00000206291; homo_sapiens. DR Ensembl-Gn; ENSG00000224103; homo_sapiens. DR Ensembl-Gn; ENSG00000228163; homo_sapiens. DR Ensembl-Gn; ENSG00000229685; homo_sapiens. DR Ensembl-Gn; ENSG00000231389; homo_sapiens. DR Ensembl-Gn; ENSG00000235844; homo_sapiens. DR Ensembl-Gn; ENSG00000236177; homo_sapiens. DR Ensembl-Tr; ENST00000374808; homo_sapiens. DR Ensembl-Tr; ENST00000383224; homo_sapiens. DR Ensembl-Tr; ENST00000415247; homo_sapiens. DR Ensembl-Tr; ENST00000419277; homo_sapiens. DR Ensembl-Tr; ENST00000422504; homo_sapiens. DR Ensembl-Tr; ENST00000443117; homo_sapiens. DR Ensembl-Tr; ENST00000454805; homo_sapiens. DR Ensembl-Tr; ENST00000515317; homo_sapiens. DR IMGT/HLA; HLA-DPA1*01:03:01:04; HLA06607. XX CC ##Assembly-Data-START## CC Assembly Method :: Assign MPS v. V1.0.0.792 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5165 FT /organism="Homo sapiens" FT /isolate="BY01267" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <79..>4999 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01:03:01:04" FT mRNA join(<79..178,3763..4008,4349..4630,4845..>4999) FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01:03:01:04" FT /product="MHC class II antigen" FT CDS join(79..178,3763..4008,4349..4630,4845..4999) FT /codon_start=1 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01:03:01:04" FT /product="MHC class II antigen" FT /db_xref="GOA:X5CKE2" FT /db_xref="InterPro:IPR001003" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:X5CKE2" FT /protein_id="AML47710.1" FT /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQ FT THRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTL FT IQRSNHTQATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGV FT AESLFLPRTDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTE FT TVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGTL" XX SQ Sequence 5165 BP; 1349 A; 1233 C; 1011 G; 1572 T; 0 other; gtctcatctg cctccactcg gcctcagttc ctcatcactg ttcctgtgct cacagtcatc 60 aattatagac cccacaacat gcgccctgaa gacagaatgt tccatatcag agctgtgatc 120 ttgagagccc tctccttggc tttcctgctg agtctccgag gagctggggc catcaagggt 180 gagtgctcag gaggacgcag gagcgtcggg gtgagtgatg gggtggttca catcaattgc 240 tgcttcaggg atcacagatt ttaggggctc attgatctat ctggtcctca tagtctatgt 300 tccctctggc cctcataata ataacagcaa taacagccag aatttatgag actcctgcat 360 agtttctttc cccatttaca tctcacagga atcttcaatg aagataatat tccattcatt 420 tagaaattat tccttttatt tagaaattat tttgaaaaaa ctgaagctca aaaagatgaa 480 taagttttcc aaggttacac agcagatcaa cgagccaagt ttgaagtcca gacccagctc 540 tgagggtcat acactgcctt ccccagattc ctgcacacag tgacctacta tcagggccct 600 cctatctctc tgggatcccc agcctctatc ttttgtggct gctttacagg aactccgagc 660 tatggactct gcattaggag acgaagtgca aagagtgttt ctgtatcctc cctctcttct 720 aggaccctag ggctcttcct gggtctttgt gggtggtcac aagctttcct ctctcaagac 780 agcagggttg catggtcttg atagccttgt gattcgggtt ctgagagatt caggactgca 840 agggaggcct agacttttga tagctgcaag gactcagcca gagatggacc gtagtgaatg 900 ctcctttttc ctgtagctga aatcagggag aatgacatca agcctgtgca tgatgctgtc 960 attccaaaat ctagtgatgg ggaaggttag aatccataac gtacaagatg cacactggct 1020 tcagacagtt ttatttaaga tgtgtagaat aaagaggagg tcaggctggg tagaaccaga 1080 agtatctatt gccctgttcg cggtcacctg agttatttct aatgttatgt tataataaac 1140 accacaatag gcttctcttc atagatgcaa atacttttta gtattcttgg tagaaattcc 1200 taatgagctc agctgtctct tcagggcttc cctgcccagt ctcttaacat ttaaacatgt 1260 catttacctt aaaaacataa gtgcaaacca actgataaaa aacaaccttg ccttcagtct 1320 gcatcctgtc ccagagacac tttctttgtg tcctcacacg tggagctaag cttctgactt 1380 gtctctggta catccctgag gatcctctca tcttggccat caggaacctc tacagaaggt 1440 caaattcagt gggttcttct cagtgcctct gacttgagtt actaataaca tttgcactat 1500 aatccacttc tttctgatga actaccctgt ccttattttt ctcctgttta cctggatcct 1560 ccttatcatc ttttaaacca cctcttaact atcatgttct ctcattatac cctgagatct 1620 cagcaattct gatttttggc actcttcctg gaaaatctta tttaacctgc acctgccact 1680 aatgactctc agttctatgg cctaaattcc tctcctgaga ccacccataa tccacaaata 1740 tctatgtatt atttctcctt agatgacttt caggtcttct aagtgcaata gccccacagt 1800 aaactcagta tcttctcccg gtcaggctgt cttccctgag agaagtggct tttgccctgt 1860 tttctgaatg cctacattga agccatctgt tccccaggaa gccttccctg atgtgctgtt 1920 tggtcgcatc ttgtgtatac ctacgtatct gcacttatcc ttctgaacct gctgttgtcc 1980 tgtcacttgt gtttccttct gtgacttata cgcgtctgca gaacaggacg tatgtattat 2040 ttttatttgg gtatttagca tctaacagtg tttgacatat agtagtcttt taatacatat 2100 ttttgtctga atggaaatga tattttgaag aaaaataatc tgttccatag ctggctgatc 2160 tttggactgc agaacttgtg aaagtgtttt ttaaaaagca ttttaaaaag tacaagggac 2220 attcatgtat taagaagatg agtttccaat aactgctaga ggactttgtg tctttttatt 2280 ttaccctctt tttcctgatg agtcctttga gtcctttaaa ctgaggagca agctaagttt 2340 cctagtgaaa tacctatagg atttgttttg tttagtttca aataccactc tttgcttggc 2400 cacttactgt gtcagggagt cattctcagt gaaaaataag acacaggtca taccctctag 2460 acacttacaa ttacagtggc aaggagtcat tctcctgtca ctgtaagtgg ccaagcacag 2520 actgggtccc cacatgtcag ggctgaaaac tcacagggaa atctgtgagt tgggaggtga 2580 gagcagaaga gtcccgtagt tccttctcac tctgatgcat ttatcattct aaacccagac 2640 tttcacatac acattcatcg ttttctttca tgataatagt tgcttttatc ctcttatctt 2700 tgctaattct tacaaactaa taaagactaa gaaacaaaat aaattaaatc ctacaggtgt 2760 tccaaactca gcaataattt ctagttggcc tctaaaacaa aaatcaaaat ataaatgtaa 2820 gaaaagttta gaatgcttag tacctgtgtg atgaaataat ctgtacacta aacccccaag 2880 tcatgagttt acctatacaa caaacctgca catgtactcc tgaacataaa ataaatgttg 2940 aaatattttt aaaaaggaaa caaaagtttg gaacaaatgc caaaataact gtactgtact 3000 tttgaattta tatgccccaa atgaaaaata ttatcaacaa agctatacat tctacagttt 3060 catgttcata aactaagaca gaaactttaa aactgtcaag agccctaaaa tttgaaggat 3120 attttcttct tcctctcaat tttgtatttt tttctacctt ttctataata agaaaaagaa 3180 aatgtccatt cccccacccc catgactcta aaaacaattt tacatctgtg tcatagaaaa 3240 attaagatct taatgggaga gaaaacctct ctactagttc cgccagtagc cgtatgacct 3300 tagcaagtta ttaatatgta acttccctgc atttccttac ctgtaaaatg tatgatatgt 3360 atttgcttca tagggttatt gtgacaattc agcgagtgaa atatgtaaag tatttagaag 3420 gatgcctggc acaagtaagt gctcaacaaa tgttagctgt cattgttact attactattg 3480 tgtagggtca ggatgcccag actttcaaag accaggaagc agcttgactt atcagtgata 3540 aacttttcat tttgttcttt gctcctttct ttttataact gctcatctgc tctgtattat 3600 ttcctttatg gtgttgctcc ttcttcttcc ccatatgtcc ttcctttgac ctcttacctt 3660 cttccttttt atattcataa gtctttattc attctctagc tttgaccact tgcatattca 3720 aactgacatt ttgtcgtgtt tttctctact gtctttatgc agcggaccat gtgtcaactt 3780 atgccgcgtt tgtacagacg catagaccaa caggggagtt tatgtttgaa tttgatgaag 3840 atgagatgtt ctatgtggat ctggacaaga aggagaccgt ctggcatctg gaggagtttg 3900 gccaagcctt ttcctttgag gctcagggcg ggctggctaa cattgctata ttgaacaaca 3960 acttgaatac cttgatccag cgttccaacc acactcaggc caccaacggt acgccctatc 4020 tttgcctctt cctctgtagc ccaactggaa gggatgagag ggcctctctg ccaccctcag 4080 actaggaagc ctaagtgccc cctgctgtgt gatcctcttc ccctagtggc catgggctga 4140 tcccactaca gcaagggctt gcatcctctc ttctcaggag agagaaaggt gagcagagtg 4200 aggctggtca gtggtgtgat acccctctct gtgattcaga gctgccataa aatctaaggc 4260 tgaggtagag gaccaccctc ccctaagagg tggagccttt gtgattcatc ccagaagagg 4320 ggcctaacct ggtgctgtct ccttccagat ccccctgagg tgaccgtgtt tcccaaggag 4380 cctgtggagc tgggccagcc caacaccctc atctgccaca ttgacaagtt cttcccacca 4440 gtgctcaacg tcacgtggct gtgcaacggg gagctggtca ctgagggtgt cgctgagagc 4500 ctcttcctgc ccagaacaga ttacagcttc cacaagttcc attacctgac ctttgtgccc 4560 tcagcagagg acttctatga ctgcagggtg gagcactggg gcttggacca gccgctcctc 4620 aagcactggg gtatgcaact gcttttctct ccataatctc ctggcatcct ctattccaaa 4680 gacctggtgt cctctgcacc agctttccgc actggctggg tctcagtcct ctcctcgtcc 4740 taacatccaa ttaactggtc cataaccttc aattcccaca accatcccag gccatcacca 4800 ccctcactgc acctcctgac cctatctctt cattcttccc ccagaggccc aagagccaat 4860 ccagatgcct gagacaacgg agactgtgct ctgtgccctg ggcctggtgc tgggcctagt 4920 cggcatcatc gtgggcaccg tcctcatcat aaagtctctg cgttctggcc atgacccccg 4980 ggcccagggg accctgtgaa atactgtaaa ggtgggaatg taaagaggag gccctaggat 5040 ttgtagaatg taaggaaggg aggaaaaatt caatctgata agtgttcatt gatcttctaa 5100 tgggttaaaa gcattcagcc acataacaac aacaataccg ataactaact gagtagttaa 5160 tatgg 5165 //