Dbfetch
ID KT716047; SV 1; linear; genomic DNA; STD; HUM; 4921 BP. XX AC KT716047; XX DT 02-MAR-2016 (Rel. 128, Created) DT 02-MAR-2016 (Rel. 128, Last updated, Version 1) XX DE Homo sapiens clone BY01256b MHC class II antigen (HLA-DPA1) gene, DE HLA-DPA1*01:03:01:01 variant allele, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-4921 RA Lazaro A.M., Hou L., Hurley C.K.; RT ; RL Submitted (04-SEP-2015) to the INSDC. RL Oncology, Georgetown University, 3970 Reservoir Rd, N.W., Washington, DC RL 20057, USA XX DR MD5; 66306af9c0b879c98f1c8ca65978267e. DR Ensembl-Gn; ENSG00000168384; homo_sapiens. DR Ensembl-Gn; ENSG00000206291; homo_sapiens. DR Ensembl-Gn; ENSG00000224103; homo_sapiens. DR Ensembl-Gn; ENSG00000228163; homo_sapiens. DR Ensembl-Gn; ENSG00000229685; homo_sapiens. DR Ensembl-Gn; ENSG00000231389; homo_sapiens. DR Ensembl-Gn; ENSG00000235844; homo_sapiens. DR Ensembl-Gn; ENSG00000236177; homo_sapiens. DR Ensembl-Tr; ENST00000374808; homo_sapiens. DR Ensembl-Tr; ENST00000383224; homo_sapiens. DR Ensembl-Tr; ENST00000415247; homo_sapiens. DR Ensembl-Tr; ENST00000419277; homo_sapiens. DR Ensembl-Tr; ENST00000422504; homo_sapiens. DR Ensembl-Tr; ENST00000443117; homo_sapiens. DR Ensembl-Tr; ENST00000454805; homo_sapiens. DR Ensembl-Tr; ENST00000515317; homo_sapiens. DR IMGT/HLA; HLA-DPA1*01:03:05; HLA14098. XX CC ##Assembly-Data-START## CC Assembly Method :: Assign MPS v. V1.0.0.792; GenDex v. CC V1.7.0.2937 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4921 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /clone="BY01256b" FT /db_xref="taxon:9606" FT gene <1..>4921 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01:03:01:01 variant" FT mRNA join(<1..100,3685..3930,4271..4552,4767..>4921) FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01:03:01:01 variant" FT /product="MHC class II antigen" FT CDS join(1..100,3685..3930,4271..4552,4767..4921) FT /codon_start=1 FT /gene="HLA-DPA1" FT /allele="HLA-DPA1*01:03:01:01 variant" FT /product="MHC class II antigen" FT /db_xref="GOA:X5CKE2" FT /db_xref="InterPro:IPR001003" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:X5CKE2" FT /protein_id="AML03232.1" FT /translation="MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQ FT THRPTGEFMFEFDEDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTL FT IQRSNHTQATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGV FT AESLFLPRTDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTE FT TVLCALGLVLGLVGIIVGTVLIIKSLRSGHDPRAQGTL" XX SQ Sequence 4921 BP; 1267 A; 1181 C; 964 G; 1509 T; 0 other; atgcgccctg aagacagaat gttccatatc agagctgtga tcttgagagc cctctccttg 60 gctttcctgc tgagtctccg aggagctggg gccatcaagg gtgagtgctc aggaggacgc 120 aggagcgtcg gggtgagtga tggggtggtt cacatcaatt gctgcttcag ggatcacaga 180 ttttaggggc tcattgatct atctggtcct catagtctat gttccctctg gccctcataa 240 taataacagc aataacagcc agaatttatg agactcctgc atagtttctt tccccattta 300 catctcacag gaatcttcaa tgaagataat attccattca tttagaaatt attcctttta 360 tttagaaatt attttgaaaa aactgaagct caaaaagatg aataagtttt ccaaggttac 420 acagcagatc aacgagccaa gtttgaagtc cagacccagc tctgagggtc atacactgcc 480 ttccccagat tcctgcacac agtgacctac tatcagggcc ctcctatctc tctgggatcc 540 ccagcctcta tcttttgtgg ctgctttaca ggaactccga gctatggact ctgcattagg 600 agacgaagtg caaagagtgt ttctgtatcc tccctctctt ctaggaccct agggctcttc 660 ctgggtcttt gtgggtggtc acaagctttc ctctctcaag acagcagggt tgcatggtct 720 tgatagcctt gtgattcggg ttctgagaga ttcaggactg caagggaggc ctagactttt 780 gatagctgca aggactcagc cagagatgga ccgtagtgaa tgctcctttt tcctgtagct 840 gaaatcaggg agaatgacat caagcctgtg catgatgctg tcattccaaa atctagtgat 900 ggggaaggtt agaatccata acgtacaaga tgcacactgg cttcagacag ttttatttaa 960 gatgtgtaga ataaagagga ggtcaggctg ggtagaacca gaagtatcta ttgccctgtt 1020 cgcggtcacc tgagttattt ctaatgttat gttataataa acaccacaat aggcttctct 1080 tcatagatgc aaatactttt tagtattctt ggtagaaatt cctaatgagc tcagctgtct 1140 cttcagggct tccctgccca gtctcttaac atttaaacat gtcatttacc ttaaaaacat 1200 aagtgcaaac caactgataa aaaacaacct tgccttcagt ctgcatcctg tcccagagac 1260 actttctttg tgtcctcaca cgtggagcta agcttctgac ttgtctctgg tacatccctg 1320 aggatcctct catcttggcc atcaggaacc tctacagaag gtcaaattca gtgggttctt 1380 ctcagtgcct ctgacttgag ttactaataa catttgcact ataatccact tctttctgat 1440 gaactaccct gtccttattt ttctcctgtt tacctggatc ctccttatca tcttttaaac 1500 cacctcttaa ctatcatgtt ctctcattat accctgagat ctcggcaatt ctgatttttg 1560 gcactcttcc tggaaaatct tatttaacct gcacctgcca ctaatgactc tcagttctat 1620 ggcctaaatt cctctcctga gaccacccat aatccacaaa tatctatgta ttatttctcc 1680 ttagatgact ttcaggtctt ctaagtgcaa tagccccaca gtgaactcag tatcttctcc 1740 cggtcaggct gtcttccctg agagaagtgg cttttgccct gttttctgaa tgcctacatt 1800 gaagccatct gttccccagg aagccttccc tgatgtgctg tttggtcgca tcttgtgtat 1860 acctacgtat ctgcacttat ccttctgaac ctgctgttgt cctgtcactt gtgtttcctt 1920 ctgtgactta tacgcgtctg cagaacagga cgtatgtatt atttttattt gggtatttag 1980 catctaacag tgtttgacat atagtagtct tttaatacat atttttgtct gaatggaaat 2040 gatattttga agaaaaataa tctgttccat agctggctga tctttggact gcagaacttg 2100 tgaaagtgtt ttttaaaaag cattttaaaa agtacaaggg acattcatgt attaagaaga 2160 tgagtttcca ataactgcta gaggactttg tgtcttttta ttttaccctc tttttcctga 2220 tgagtccttt gagtccttta aactgaggag caagctaagt ttcctagtga aatacctata 2280 ggatttgttt tgtttagttt caaataccac tctttgcttg gccacttact gtgtcaggga 2340 gtcattctca gtgaaaaata agacacaggt cataccctct agacacttac aattacagtg 2400 gcaaggagtc attctcctgt cactgtaagt ggccaagcac agactgggtc cccacatgtc 2460 agggctgaaa actcacaggg aaatctgtga gttgggaggt gagagcagaa gagtcccgta 2520 gttccttctc actctgatgc atttatcatt ctaaacccag actttcacat acacattcat 2580 cgttttcttt catgataata gttgctttta tcctcttatc tttgctaatt cttacaaact 2640 aataaagact aagaaacaaa ataaattaaa tcctacaggt gttccaaact cagcaataat 2700 ttctagttgg cctctaaaac aaaaatcaaa atataaatgt aagaaaagtt tagaatgctt 2760 agtacctgtg tgatgaaata atctgtacac taaaccccca agtcatgagt ttacctatac 2820 aacaaacctg cacatgtact cctgaacata aaataaatgt tgaaatattt ttaaaaagga 2880 aacaaaagtt tggaacaaat gccaaaataa ctgtactgta cttttgaatt tatatgcccc 2940 aaatgaaaaa tattatcaac aaagctatac attctacagt ttcatgttca taaactaaga 3000 cagaaacttt aaaactgtca agagccctaa aatttgaagg atattttctt cttcctctca 3060 attttgtatt tttttctacc ttttctataa taagaaaaag aaaatgtcca ttcccccacc 3120 cccatgactc taaaaacaat tttacatctg tgtcatagaa aaattaagat cttaatggga 3180 gagaaaacct ctctactagt tccgccagta gccgtatgac cttagcaagt tattaatatg 3240 taacttccct gcatttcctt acctgtaaaa tgtatgatat gtatttgctt catagggtta 3300 ttgtgacaat tcagcgactg aaatatgtaa agtatttaga aggatgcctg gcacaagtaa 3360 gtgctcaaca aatgttagct gtcattgtta ctattactat tgtgtagggt caggatgccc 3420 agactttcaa agaccaggaa gcagcttgac ttatcagtga taaacttttc attttgttct 3480 ttgctccttt ctttttataa ctgctcatct gctctgtatt atttccttta tggtgttgct 3540 ccttcttctt ccccatatgt ccttcctttg acctcttacc ttcttccttt ttatattcat 3600 aagtctttat tcattctcta gctttgacca cttgcatatt caaactgaca ttttgtcgtg 3660 tttttctcta ctgtctttat gcagcggacc atgtgtcaac ttatgccgcg tttgtacaga 3720 cgcatagacc aacaggggag tttatgtttg aatttgatga agatgagatg ttctatgtgg 3780 atctggacaa gaaggagacc gtctggcatc tggaggagtt tggccaagcc ttttcctttg 3840 aggctcaggg cgggctggct aacattgcta tattgaacaa caacttgaat accttgatcc 3900 agcgttccaa ccacactcag gccaccaacg gtacgcccta tctttgcctc ttcctctgta 3960 gcccaactgg aagggatgag agggcctctc tgccaccctc agactaggaa gcctaagtgc 4020 cccctgctgt gtgatcctct tcccctagtg gccatgggct gatcccacta cagcaagggc 4080 ttgcatcctc tcttctcagg agagagaaag gtgagcagag tgaggctggt cagtggtgtg 4140 atacccctgt ctgtgattca gagctgccat aaaatctaag gctgaggtag aggaccaccc 4200 tcccctaaga ggtggagcct ttgtgattca tcccagaaga ggggcctaac ctggtgctgt 4260 ctccttccag atccccctga ggtgaccgtg tttcccaagg agcctgtgga gctgggccag 4320 cccaacaccc tcatctgcca cattgacaag ttcttcccac cagtgctcaa cgtcacgtgg 4380 ctgtgcaatg gggagctggt cactgagggt gtcgctgaga gcctcttcct gcccagaaca 4440 gattacagct tccacaagtt ccattacctg acctttgtgc cctcagcaga ggacttctat 4500 gactgcaggg tggagcactg gggcttggac cagccgctcc tcaagcactg gggtatgcaa 4560 ctgcttttct ctccataatc tcctggcatc ctctattcca aagacctggt gtcctctgca 4620 ccagctttcc gcactggctg ggtctcagtc ctctcctcgt cctaacatcc aattaactgg 4680 tccataacct tcaattccca caaccatccc aggccatcac caccctcact gcacctcctg 4740 accctatctc ttcattcttc ccccagaggc ccaagagcca atccagatgc ctgagacaac 4800 ggagactgtg ctctgtgccc tgggcctggt gctgggccta gtcggcatca tcgtgggcac 4860 cgtcctcatc ataaagtctc tgcgttctgg ccatgacccc cgggcccagg ggaccctgtg 4920 a 4921 //