Dbfetch

Dbfetch

ID   KM374596; SV 1; linear; genomic DNA; STD; HUM; 1101 BP.
XX
AC   KM374596;
XX
DT   19-NOV-2014 (Rel. 122, Created)
DT   19-NOV-2014 (Rel. 122, Last updated, Version 1)
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DE   Homo sapiens isolate D12002850 MHC class II antigen (HLA-DRB1) gene, exons
DE   2 through 6 and partial cds.
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-1101
RA   Fang J., Yang X., Huang C., Qu J., Tan J., Dong W., Yang L., Huang X.,
RA   Ye K., Zhang R., Wang X., Xie Q., Huang Y., Zhang L., Liu B., Li Y.;
RT   "14 novel alleles of HLA-DRB1 gene found by BGI in 2012";
RL   Unpublished.
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RN   [2]
RP   1-1101
RA   Fang J., Yang X., Huang C., Qu J., Tan J., Dong W., Yang L., Huang X.,
RA   Ye K., Zhang R., Wang X., Xie Q., Huang Y., Zhang L., Liu B., Li Y.;
RT   ;
RL   Submitted (19-AUG-2014) to the INSDC.
RL   Diagnostics, BGI, Building No. 11 3F, Beishan Industrial Zone, Yantian
RL   District, Shenzhen, Guangdong 518083, China
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DR   MD5; 40af0c4aacc4596dd472e81535f90134.
DR   IMGT/HLA; HLA-DRB1*15:114; HLA12489.
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CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..1101
FT                   /organism="Homo sapiens"
FT                   /isolate="D12002850"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   gene            <1..>1101
FT                   /gene="HLA-DRB1"
FT   mRNA            join(<1..270,371..652,753..863,964..987,1088..>1101)
FT                   /gene="HLA-DRB1"
FT                   /product="MHC class II antigen"
FT   CDS             join(<1..270,371..652,753..863,964..987,1088..1101)
FT                   /codon_start=3
FT                   /gene="HLA-DRB1"
FT                   /product="MHC class II antigen"
FT                   /note="antigen presenting molecule"
FT                   /db_xref="GOA:A0A0A0WGI7"
FT                   /db_xref="InterPro:IPR000353"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR014745"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="UniProtKB/TrEMBL:A0A0A0WGI7"
FT                   /protein_id="AIW80231.1"
FT                   /translation="RFLWQPKRECYFFNGTERVRFLDRYFYNQEESVRFDSDVGEFRAV
FT                   TELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTVQRRVQPKVTVYPSKTQPL
FT                   QHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNGDWTFQTLVMLETVPRSG
FT                   EVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGH
FT                   SGLQPTGFLS"
FT   exon            1..270
FT                   /gene="HLA-DRB1"
FT                   /number=2
FT   gap             271..370
FT                   /estimated_length=unknown
FT   exon            371..652
FT                   /gene="HLA-DRB1"
FT                   /number=3
FT   gap             653..752
FT                   /estimated_length=unknown
FT   exon            753..863
FT                   /gene="HLA-DRB1"
FT                   /number=4
FT   gap             864..963
FT                   /estimated_length=unknown
FT   exon            964..987
FT                   /gene="HLA-DRB1"
FT                   /number=5
FT   gap             988..1087
FT                   /estimated_length=unknown
FT   exon            1088..>1101
FT                   /gene="HLA-DRB1"
FT                   /number=6
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SQ   Sequence 1101 BP; 156 A; 177 C; 226 G; 142 T; 400 other;
     cacgtttcct gtggcagcct aagagggagt gttatttctt caatgggacg gagcgggtgc        60
     ggttcctgga cagatacttc tataaccagg aggagtccgt gcgcttcgac agcgacgtgg       120
     gggagttccg ggcggtgacg gagctggggc ggcctgacgc tgagtactgg aacagccaga       180
     aggacatcct ggagcaggcg cgggccgcgg tggacaccta ctgcagacac aactacgggg       240
     ttgtggagag cttcacagtg cagcggcgag nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn tccaacctaa ggtgactgta tatccttcaa agacccagcc cctgcagcac       420
     cacaacctcc tggtctgctc tgtgagtggt ttctatccag gcagcattga agtcaggtgg       480
     ttcctgaacg gccaggaaga gaaggctggg atggtgtcca caggcctgat ccagaatgga       540
     gactggacct tccagaccct ggtgatgctg gaaacagttc ctcgaagtgg agaggtttac       600
     acctgccaag tggagcaccc aagcgtgaca agccctctca cagtggaatg gannnnnnnn       660
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       720
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngagcacgg tctgaatctg cacagagcaa       780
     gatgctgagt ggagtcgggg gctttgtgct gggcctgctc ttccttgggg ccgggctgtt       840
     catctacttc aggaatcaga aagnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       900
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       960
     nnngacactc tggacttcag ccaacagnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnngat tcctgagctg a                                                1101
//